Result of FASTA (ccds) for
pF1KSDA0035
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0035, 709 aa
1>>>pF1KSDA0035 709 - 709 aa - 709 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 14.3155+/-0.00108; mu= -19.7292+/- 0.066
mean_var=524.9732+/-108.134, 0's: 0 Z-trim(116.4): 50 B-trim: 0 in 0/53
Lambda= 0.055976
statistics sampled from 16951 (16995) to 16951 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.522), width: 16
Scan time: 4.010
The best scores are: opt bits E(32554)
CCDS65926.1 NOLC1 gene_id:9221|Hs108|chr10 ( 709) 4449 374.0 4.2e-103
CCDS7530.1 NOLC1 gene_id:9221|Hs108|chr10 ( 699) 3034 259.7 1.1e-68
CCDS65925.1 NOLC1 gene_id:9221|Hs108|chr10 ( 700) 3034 259.7 1.1e-68
>>CCDS65926.1 NOLC1 gene_id:9221|Hs108|chr10 (709 aa)
initn: 4449 init1: 4449 opt: 4449 Z-score: 1964.4 bits: 374.0 E(32554): 4.2e-103
Smith-Waterman score: 4449; 99.7% identity (99.7% similar) in 709 aa overlap (1-709:1-709)
10 20 30 40 50 60
pF1KSD MAAAGIRRVVPSDLYPLVLGFLRDNQLSEVANKFAKATGATQQDANASSLLDIYSFWLKS
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MADAGIRRVVPSDLYPLVLGFLRDNQLSEVANKFAKATGATQQDANASSLLDIYSFWLKS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD AKVPERKLQANGPVAKKAKKKASSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AKVPERKLQANGPVAKKAKKKASSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD AKASESSSSEESSDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AKASESSSSEESSDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD KNQKPKITPVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 KNQKPKITPVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATPK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD KVWTITSVRAETVPKKQVVAKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 KVWTITSVRAETVPKKQVVAKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPYS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD SVPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSEEEKKPPTKAVVSKATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SVPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSEEEKKPPTKAVVSKATT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD KPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 KPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQPV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD GGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKATAKAALPLPAKQAPQGSRDSS
::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
CCDS65 GGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKATAKAALSLPAKQAPQGSRDSS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD SDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD EKLKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEEEEKKKAAVVVSKSGSLKKRKQNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EKLKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEEEEKKKAAVVVSKSGSLKKRKQNE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD AAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVREEEIEVDSRVADNSFDAKRGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVREEEIEVDSRVADNSFDAKRGA
610 620 630 640 650 660
670 680 690 700
pF1KSD AGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFDSE
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFDSE
670 680 690 700
>>CCDS7530.1 NOLC1 gene_id:9221|Hs108|chr10 (699 aa)
initn: 2875 init1: 2875 opt: 3034 Z-score: 1346.9 bits: 259.7 E(32554): 1.1e-68
Smith-Waterman score: 4356; 98.3% identity (98.3% similar) in 709 aa overlap (1-709:1-699)
10 20 30 40 50 60
pF1KSD MAAAGIRRVVPSDLYPLVLGFLRDNQLSEVANKFAKATGATQQDANASSLLDIYSFWLKS
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MADAGIRRVVPSDLYPLVLGFLRDNQLSEVANKFAKATGATQQDANASSLLDIYSFWLKS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD AKVPERKLQANGPVAKKAKKKASSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AKVPERKLQANGPVAKKAKKKASSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD AKASESSSSEESSDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AKASESSSSEESSDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD KNQKPKITPVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KNQKPKITPVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATPK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD KVWTITSVRAETVPKKQVVAKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPYS
: :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 K----------TVPKKQVVAKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPYS
250 260 270 280 290
310 320 330 340 350 360
pF1KSD SVPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSEEEKKPPTKAVVSKATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SVPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSEEEKKPPTKAVVSKATT
300 310 320 330 340 350
370 380 390 400 410 420
pF1KSD KPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQPV
360 370 380 390 400 410
430 440 450 460 470 480
pF1KSD GGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKATAKAALPLPAKQAPQGSRDSS
::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
CCDS75 GGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKATAKAALSLPAKQAPQGSRDSS
420 430 440 450 460 470
490 500 510 520 530 540
pF1KSD SDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEE
480 490 500 510 520 530
550 560 570 580 590 600
pF1KSD EKLKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEEEEKKKAAVVVSKSGSLKKRKQNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EKLKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEEEEKKKAAVVVSKSGSLKKRKQNE
540 550 560 570 580 590
610 620 630 640 650 660
pF1KSD AAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVREEEIEVDSRVADNSFDAKRGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVREEEIEVDSRVADNSFDAKRGA
600 610 620 630 640 650
670 680 690 700
pF1KSD AGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFDSE
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFDSE
660 670 680 690
>>CCDS65925.1 NOLC1 gene_id:9221|Hs108|chr10 (700 aa)
initn: 2875 init1: 2875 opt: 3034 Z-score: 1346.9 bits: 259.7 E(32554): 1.1e-68
Smith-Waterman score: 4341; 98.0% identity (98.2% similar) in 710 aa overlap (1-709:1-700)
10 20 30 40 50
pF1KSD MAAAGIRRVVPSDLYPLVLGFLRDNQLSEVANKFAKATGATQQDANASSLLDIYSFWL-K
:: ::::::::::::::::::::::::::::::::::::::::::::::::::::::: .
CCDS65 MADAGIRRVVPSDLYPLVLGFLRDNQLSEVANKFAKATGATQQDANASSLLDIYSFWLNR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD SAKVPERKLQANGPVAKKAKKKASSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SAKVPERKLQANGPVAKKAKKKASSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KSD AAKASESSSSEESSDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AAKASESSSSEESSDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEP
130 140 150 160 170 180
180 190 200 210 220 230
pF1KSD PKNQKPKITPVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 PKNQKPKITPVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATP
190 200 210 220 230 240
240 250 260 270 280 290
pF1KSD KKVWTITSVRAETVPKKQVVAKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPY
:: ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 KK----------TVPKKQVVAKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPY
250 260 270 280 290
300 310 320 330 340 350
pF1KSD SSVPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSEEEKKPPTKAVVSKAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SSVPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSEEEKKPPTKAVVSKAT
300 310 320 330 340 350
360 370 380 390 400 410
pF1KSD TKPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 TKPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQP
360 370 380 390 400 410
420 430 440 450 460 470
pF1KSD VGGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKATAKAALPLPAKQAPQGSRDS
:::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
CCDS65 VGGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKATAKAALSLPAKQAPQGSRDS
420 430 440 450 460 470
480 490 500 510 520 530
pF1KSD SSDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SSDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEE
480 490 500 510 520 530
540 550 560 570 580 590
pF1KSD EEKLKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEEEEKKKAAVVVSKSGSLKKRKQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EEKLKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEEEEKKKAAVVVSKSGSLKKRKQN
540 550 560 570 580 590
600 610 620 630 640 650
pF1KSD EAAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVREEEIEVDSRVADNSFDAKRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EAAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVREEEIEVDSRVADNSFDAKRG
600 610 620 630 640 650
660 670 680 690 700
pF1KSD AAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFDSE
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFDSE
660 670 680 690 700
709 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 23:31:29 2016 done: Wed Nov 2 23:31:29 2016
Total Scan time: 4.010 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]