FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0036, 598 aa
  1>>>pF1KSDA0036 598 - 598 aa - 598 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8440+/-0.00122; mu= 6.4523+/- 0.072
 mean_var=143.0339+/-27.665, 0's: 0 Z-trim(105.1): 44  B-trim: 0 in 0/52
 Lambda= 0.107239
 statistics sampled from 8211 (8231) to 8211 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.253), width:  16
 Scan time:  3.680

The best scores are:                                      opt bits E(32554)
CCDS33837.1 IQCB1 gene_id:9657|Hs108|chr3          ( 598) 3874 611.9 7.5e-175
CCDS33836.1 IQCB1 gene_id:9657|Hs108|chr3          ( 465) 1773 286.8 4.3e-77


>>CCDS33837.1 IQCB1 gene_id:9657|Hs108|chr3               (598 aa)
 initn: 3874 init1: 3874 opt: 3874  Z-score: 3252.6  bits: 611.9 E(32554): 7.5e-175
Smith-Waterman score: 3874; 100.0% identity (100.0% similar) in 598 aa overlap (1-598:1-598)

               10        20        30        40        50        60
pF1KSD MKPTGTDPRILSIAAEVAKSPEQNVPVILLKLKEIINITPLGSSELKKIKQDIYCYDLIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MKPTGTDPRILSIAAEVAKSPEQNVPVILLKLKEIINITPLGSSELKKIKQDIYCYDLIQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD YCLLVLSQDYSRIQGGWTTISQLTQILSHCCVGLEPGEDAEEFYNELLPSAAENFLVLGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YCLLVLSQDYSRIQGGWTTISQLTQILSHCCVGLEPGEDAEEFYNELLPSAAENFLVLGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD QLQTCFINAAKAEEKDELLHFFQIVTDSLFWLLGGHVELIQNVLQSDHFLHLLQADNVQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QLQTCFINAAKAEEKDELLHFFQIVTDSLFWLLGGHVELIQNVLQSDHFLHLLQADNVQI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GSAVMMMLQNILQINSGDLLRIGRKALYSILDEVIFKLFSTPSPVIRSTATKLLLLMAES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GSAVMMMLQNILQINSGDLLRIGRKALYSILDEVIFKLFSTPSPVIRSTATKLLLLMAES
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD HQEILILLRQSTCYKGLRRLLSKQETGTEFSQELRQLVGLLSPMVYQEVEEQKLHQAACL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 HQEILILLRQSTCYKGLRRLLSKQETGTEFSQELRQLVGLLSPMVYQEVEEQKLHQAACL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD IQAYWKGFQTRKRLKKLPSAVIALQRSFRSKRSKMLLEINRQKEEEDLKLQLQLQRQRAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IQAYWKGFQTRKRLKKLPSAVIALQRSFRSKRSKMLLEINRQKEEEDLKLQLQLQRQRAM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD RLSRELQLSMLEIVHPGQVEKHYREMEEKSALIIQKHWRGYRERKNFHQQRQSLIEYKAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RLSRELQLSMLEIVHPGQVEKHYREMEEKSALIIQKHWRGYRERKNFHQQRQSLIEYKAA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD VTLQRAALKFLAKCRKKKKLFAPWRGLQELTDARRVELKKRVDDYVRRHLGSPMSDVVSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VTLQRAALKFLAKCRKKKKLFAPWRGLQELTDARRVELKKRVDDYVRRHLGSPMSDVVSR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD ELHAQAQERLQHYFMGRALEERAQQHREALIAQISTNVEQLMKAPSLKEAEGKEPELFLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ELHAQAQERLQHYFMGRALEERAQQHREALIAQISTNVEQLMKAPSLKEAEGKEPELFLS
              490       500       510       520       530       540

              550       560       570       580       590        
pF1KSD RSRPVAAKAKQAHLTTLKHIQAPWWKKLGEESGDEIDVPKDELSIELENLFIGGTKPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RSRPVAAKAKQAHLTTLKHIQAPWWKKLGEESGDEIDVPKDELSIELENLFIGGTKPP
              550       560       570       580       590        

>>CCDS33836.1 IQCB1 gene_id:9657|Hs108|chr3               (465 aa)
 initn: 3023 init1: 1762 opt: 1773  Z-score: 1497.5  bits: 286.8 E(32554): 4.3e-77
Smith-Waterman score: 2761; 77.8% identity (77.8% similar) in 598 aa overlap (1-598:1-465)

               10        20        30        40        50        60
pF1KSD MKPTGTDPRILSIAAEVAKSPEQNVPVILLKLKEIINITPLGSSELKKIKQDIYCYDLIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MKPTGTDPRILSIAAEVAKSPEQNVPVILLKLKEIINITPLGSSELKKIKQDIYCYDLIQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD YCLLVLSQDYSRIQGGWTTISQLTQILSHCCVGLEPGEDAEEFYNELLPSAAENFLVLGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YCLLVLSQDYSRIQGGWTTISQLTQILSHCCVGLEPGEDAEEFYNELLPSAAENFLVLGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD QLQTCFINAAKAEEKDELLHFFQIVTDSLFWLLGGHVELIQNVLQSDHFLHLLQADNVQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QLQTCFINAAKAEEKDELLHFFQIVTDSLFWLLGGHVELIQNVLQSDHFLHLLQADNVQI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GSAVMMMLQNILQINSGDLLRIGRKALYSILDEVIFKLFSTPSPVIRSTATKLLLLMAES
       :::::::::::::::                                             
CCDS33 GSAVMMMLQNILQIN---------------------------------------------
              190                                                  

              250       260       270       280       290       300
pF1KSD HQEILILLRQSTCYKGLRRLLSKQETGTEFSQELRQLVGLLSPMVYQEVEEQKLHQAACL
                                                                   
CCDS33 ------------------------------------------------------------
                                                                   

              310       320       330       340       350       360
pF1KSD IQAYWKGFQTRKRLKKLPSAVIALQRSFRSKRSKMLLEINRQKEEEDLKLQLQLQRQRAM
                                   ::::::::::::::::::::::::::::::::
CCDS33 ----------------------------RSKRSKMLLEINRQKEEEDLKLQLQLQRQRAM
                                     200       210       220       

              370       380       390       400       410       420
pF1KSD RLSRELQLSMLEIVHPGQVEKHYREMEEKSALIIQKHWRGYRERKNFHQQRQSLIEYKAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RLSRELQLSMLEIVHPGQVEKHYREMEEKSALIIQKHWRGYRERKNFHQQRQSLIEYKAA
       230       240       250       260       270       280       

              430       440       450       460       470       480
pF1KSD VTLQRAALKFLAKCRKKKKLFAPWRGLQELTDARRVELKKRVDDYVRRHLGSPMSDVVSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VTLQRAALKFLAKCRKKKKLFAPWRGLQELTDARRVELKKRVDDYVRRHLGSPMSDVVSR
       290       300       310       320       330       340       

              490       500       510       520       530       540
pF1KSD ELHAQAQERLQHYFMGRALEERAQQHREALIAQISTNVEQLMKAPSLKEAEGKEPELFLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ELHAQAQERLQHYFMGRALEERAQQHREALIAQISTNVEQLMKAPSLKEAEGKEPELFLS
       350       360       370       380       390       400       

              550       560       570       580       590        
pF1KSD RSRPVAAKAKQAHLTTLKHIQAPWWKKLGEESGDEIDVPKDELSIELENLFIGGTKPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RSRPVAAKAKQAHLTTLKHIQAPWWKKLGEESGDEIDVPKDELSIELENLFIGGTKPP
       410       420       430       440       450       460     




598 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:33:29 2016 done: Wed Nov  2 23:33:30 2016
 Total Scan time:  3.680 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]