(Circular) (Six-base) MAPSORT of: pF1KSDA0037.seq Check: 8859 from: 1 to: 6377 pF1KSDA0037 6377 bp With 182 enzymes: SgfI * June 20, 2008 10:32 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 489 1194 2302 489 Size: 705 1108 4564 Fragments arranged by size: 4564 1108 705 AccI GT'mk_AC Cuts at: 3415 3415 Size: 6377 Acc65I G'GTAC_C Cuts at: 1583 2735 3393 1583 Size: 1152 658 4567 Fragments arranged by size: 4567 1152 658 AclI AA'CG_TT Cuts at: 6217 6217 Size: 6377 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 270 534 1573 2530 2905 4202 4634 5381 5649 Size: 264 1039 957 375 1297 432 747 268 Cuts at: 5649 270 Size: 998 Fragments arranged by size: 1297 1039 998 957 747 432 375 268 264 AflIII A'CryG_T Cuts at: 1184 1304 1319 3729 4833 5810 1184 Size: 120 15 2410 1104 977 1751 Fragments arranged by size: 2410 1751 1104 977 120 15 AgeI A'CCGG_T Cuts at: 4765 4765 Size: 6377 AhdI GACnn_n'nnGTC Cuts at: 1308 1308 Size: 6377 AleI CACnn'nnGTG Cuts at: 1222 3008 1222 Size: 1786 4591 AlwNI CAG_nnn'CTG Cuts at: 666 1007 2121 2985 3354 3682 5249 666 Size: 341 1114 864 369 328 1567 1794 Fragments arranged by size: 1794 1567 1114 864 369 341 328 ApaI G_GGCC'C Cuts at: 172 1905 3138 172 Size: 1733 1233 3411 Fragments arranged by size: 3411 1733 1233 ApaLI G'TGCA_C Cuts at: 1366 5147 1366 Size: 3781 2596 ApoI r'AATT_y Cuts at: 3381 5730 5986 3381 Size: 2349 256 3772 Fragments arranged by size: 3772 2349 256 AseI AT'TA_AT Cuts at: 20 20 Size: 6377 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6377 AvaI C'yCGr_G Cuts at: 740 1254 1588 1898 2058 2075 3256 3397 740 Size: 514 334 310 160 17 1181 141 3720 Fragments arranged by size: 3720 1181 514 334 310 160 141 17 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 3252 3285 3252 Size: 33 6344 BamHI G'GATC_C Cuts at: 3402 3402 Size: 6377 BanI G'GyrC_C Cuts at: 501 706 947 1583 1887 2470 2482 2735 3393 Size: 205 241 636 304 583 12 253 658 Cuts at: 3393 3807 4055 4090 501 Size: 414 248 35 2788 Fragments arranged by size: 2788 658 636 583 414 304 253 248 241 205 35 12 BanII G_rGCy'C Cuts at: 172 1046 1793 1905 2268 2279 2879 2954 3138 Size: 874 747 112 363 11 600 75 184 Cuts at: 3138 3391 4421 172 Size: 253 1030 2128 Fragments arranged by size: 2128 1030 874 747 600 363 253 184 112 75 11 BbeI G_GCGC'C Cuts at: 710 3811 4059 710 Size: 3101 248 3028 Fragments arranged by size: 3101 3028 248 BbsI GAAGACnn'nnnn_ Cuts at: 516 2322 2518 516 Size: 1806 196 4375 Fragments arranged by size: 4375 1806 196 BbvCI CC'TCA_GC Cuts at: 2125 3310 2125 Size: 1185 5192 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1932 1966 1932 Size: 34 6343 BciVI GTATCCnnnnn_n' Cuts at: 4275 5036 6377 4275 Size: 761 1341 4275 Fragments arranged by size: 4275 1341 761 BclI T'GATC_A Cuts at: 3284 3897 3284 Size: 613 5764 BglI GCCn_nnn'nGGC Cuts at: 265 577 2383 2695 265 Size: 312 1806 312 3947 Fragments arranged by size: 3947 1806 312 312 BglII A'GATC_T Cuts at: 3892 5929 3892 Size: 2037 4340 BlpI GC'TnA_GC Cuts at: 1792 2953 3489 1792 Size: 1161 536 4680 Fragments arranged by size: 4680 1161 536 Bme1580I G_kGCm'C Cuts at: 172 506 1370 1427 1905 2972 3138 4002 4095 Size: 334 864 57 478 1067 166 864 93 Cuts at: 4095 5151 172 Size: 1056 1398 Fragments arranged by size: 1398 1067 1056 864 864 478 334 166 93 57 BmgBI CAC'GTC Cuts at: 1305 1320 1662 1305 Size: 15 342 6020 Fragments arranged by size: 6020 342 15 BmrI ACTGGGnnnn_n' Cuts at: 635 1996 2029 3589 3670 4005 6149 635 Size: 1361 33 1560 81 335 2144 863 Fragments arranged by size: 2144 1560 1361 863 335 81 33 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 1770 4744 1770 Size: 2974 3403 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 288 1876 2368 2550 2692 2851 3007 3143 3221 Size: 1588 492 182 142 159 156 136 78 Cuts at: 3221 3232 288 Size: 11 3433 Fragments arranged by size: 3433 1588 492 182 159 156 142 136 78 11 Bpu10I CC'TnA_GC Cuts at: 403 2125 3310 403 Size: 1722 1185 3470 Fragments arranged by size: 3470 1722 1185 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 868 1435 3553 4432 4924 5222 868 Size: 567 2118 879 492 298 2023 Fragments arranged by size: 2118 2023 879 567 492 298 BsaI GGTCTCn'nnnn_ Cuts at: 1648 2635 3226 6081 1648 Size: 987 591 2855 1944 Fragments arranged by size: 2855 1944 987 591 BsaAI yAC'GTr Cuts at: 2694 2933 3369 3730 2694 Size: 239 436 361 5341 Fragments arranged by size: 5341 436 361 239 BsaBI GATnn'nnATC Cuts at: 6 1462 3891 5928 6 Size: 1456 2429 2037 455 Fragments arranged by size: 2429 2037 1456 455 BsaHI Gr'CG_yC Cuts at: 707 1564 3808 4056 4758 6254 707 Size: 857 2244 248 702 1496 830 Fragments arranged by size: 2244 1496 857 830 702 248 BsaWI w'CCGG_w Cuts at: 1334 3566 4087 4765 5039 5186 5597 1334 Size: 2232 521 678 274 147 411 2114 Fragments arranged by size: 2232 2114 678 521 411 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 3052 3082 3052 Size: 30 6347 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 178 2647 3244 178 Size: 2469 597 3311 Fragments arranged by size: 3311 2469 597 BseYI C'CCAG_C Cuts at: 444 1513 1694 2031 2070 3354 3802 4560 5137 Size: 1069 181 337 39 1284 448 758 577 Cuts at: 5137 5633 444 Size: 496 1188 Fragments arranged by size: 1284 1188 1069 758 577 496 448 337 181 39 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 2073 3222 2073 Size: 1149 5228 BsiEI CG_ry'CG Cuts at: 104 1362 1744 3919 3965 5173 104 Size: 1258 382 2175 46 1208 1308 Fragments arranged by size: 2175 1308 1258 1208 382 46 BsiHKAI G_wGCw'C Cuts at: 611 1046 1370 2399 2630 2879 3391 4169 4359 Size: 435 324 1029 231 249 512 778 190 Cuts at: 4359 5151 611 Size: 792 1837 Fragments arranged by size: 1837 1029 792 778 512 435 324 249 231 190 BsiWI C'GTAC_G Cuts at: 1406 1757 1406 Size: 351 6026 BsmI GAATG_Cn' Cuts at: 3277 3277 Size: 6377 BsmBI CGTCTCn'nnnn_ Cuts at: 588 588 Size: 6377 Bsp1286I G_dGCh'C Cuts at: 172 506 611 1046 1370 1427 1793 1905 2268 Size: 334 105 435 324 57 366 112 363 Cuts at: 2268 2279 2399 2630 2879 2954 2972 3138 3391 Size: 11 120 231 249 75 18 166 253 Cuts at: 3391 4002 4095 4169 4359 4421 5151 172 Size: 611 93 74 190 62 730 1398 Fragments arranged by size: 1398 730 611 435 366 363 334 324 253 249 231 190 166 120 112 105 93 75 74 62 57 18 11 BspEI T'CCGG_A Cuts at: 5597 5597 Size: 6377 BspHI T'CATG_A Cuts at: 5553 5553 Size: 6377 BspMI ACCTGCnnnn'nnnn_ Cuts at: 489 827 1194 2192 2302 3244 3427 3641 3943 Size: 338 367 998 110 942 183 214 302 Cuts at: 3943 4324 489 Size: 381 2542 Fragments arranged by size: 2542 998 942 381 367 338 302 214 183 110 BsrBI CCG'CTC Cuts at: 50 2991 4669 4723 6207 6372 50 Size: 2941 1678 54 1484 165 55 Fragments arranged by size: 2941 1678 1484 165 55 54 BsrDI GCAATG_nn' Cuts at: 278 2232 2858 4289 278 Size: 1954 626 1431 2366 Fragments arranged by size: 2366 1954 1431 626 BsrFI r'CCGG_y Cuts at: 4375 4556 4765 4375 Size: 181 209 5987 Fragments arranged by size: 5987 209 181 BsrGI T'GTAC_A Cuts at: 533 533 Size: 6377 BssSI C'ACGA_G Cuts at: 1800 2629 2971 4648 5006 1800 Size: 829 342 1677 358 3171 Fragments arranged by size: 3171 1677 829 358 342 BstAPI GCAn_nnn'nTGC Cuts at: 726 3754 726 Size: 3028 3349 BstBI TT'CG_AA Cuts at: 110 4738 110 Size: 4628 1749 BstEII G'GTnAC_C Cuts at: 895 3222 895 Size: 2327 4050 BstXI CCAn_nnnn'nTGG Cuts at: 1023 1224 1338 1854 3189 1023 Size: 201 114 516 1335 4211 Fragments arranged by size: 4211 1335 516 201 114 BstYI r'GATC_y Cuts at: 1 776 1097 3402 3869 3892 4227 4473 5485 Size: 775 321 2305 467 23 335 246 1012 Cuts at: 5485 5571 5583 5929 1 Size: 86 12 346 449 Fragments arranged by size: 2305 1012 775 467 449 346 335 321 246 86 23 12 Bsu36I CC'TnA_GG Cuts at: 2335 2964 2335 Size: 629 5748 BtgI C'CryG_G Cuts at: 851 1217 2645 3105 3276 851 Size: 366 1428 460 171 3952 Fragments arranged by size: 3952 1428 460 366 171 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 2301 2825 3015 4327 4508 4671 2301 Size: 524 190 1312 181 163 4007 Fragments arranged by size: 4007 1312 524 190 181 163 BtsI GCAGTG_nn' Cuts at: 254 587 1653 2428 3335 3620 254 Size: 333 1066 775 907 285 3011 Fragments arranged by size: 3011 1066 907 775 333 285 DraI TTT'AAA Cuts at: 3376 3376 Size: 6377 DraIII CAC_nnn'GTG Cuts at: 643 1320 1990 2807 643 Size: 677 670 817 4213 Fragments arranged by size: 4213 817 677 670 DrdI GACnn_nn'nnGTC Cuts at: 4083 4941 4083 Size: 858 5519 EaeI y'GGCC_r Cuts at: 248 668 866 998 1328 1359 2138 2171 2243 Size: 420 198 132 330 31 779 33 72 Cuts at: 2243 2436 3179 3962 4136 4527 4554 5899 248 Size: 193 743 783 174 391 27 1345 726 Fragments arranged by size: 1345 783 779 743 726 420 391 330 198 193 174 132 72 33 31 27 EagI C'GGCC_G Cuts at: 1359 3962 1359 Size: 2603 3774 EarI CTCTTCn'nnn_ Cuts at: 754 2404 4400 4610 754 Size: 1650 1996 210 2521 Fragments arranged by size: 2521 1996 1650 210 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 769 1689 3073 4585 4895 5041 6187 769 Size: 920 1384 1512 310 146 1146 959 Fragments arranged by size: 1512 1384 1146 959 920 310 146 EcoICRI GAG'CTC Cuts at: 1044 2877 3389 1044 Size: 1833 512 4032 Fragments arranged by size: 4032 1833 512 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 270 288 534 1573 1876 2368 2530 2550 2692 Size: 18 246 1039 303 492 162 20 142 Cuts at: 2692 2851 2905 3007 3143 3221 3232 4202 4634 Size: 159 54 102 136 78 11 970 432 Cuts at: 4634 5381 5649 270 Size: 747 268 998 Fragments arranged by size: 1039 998 970 747 492 432 303 268 246 162 159 142 136 102 78 54 20 18 11 EcoNI CCTnn'n_nnAGG Cuts at: 154 1399 1858 154 Size: 1245 459 4673 Fragments arranged by size: 4673 1245 459 EcoO109I rG'GnC_Cy Cuts at: 168 169 297 407 744 1440 1805 2505 3134 Size: 1 128 110 337 696 365 700 629 Cuts at: 3134 3252 3516 168 Size: 118 264 3029 Fragments arranged by size: 3029 700 696 629 365 337 264 128 118 110 1 EcoRI G'AATT_C Cuts at: 3381 3381 Size: 6377 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 4396 4396 Size: 6377 FspI TGC'GCA Cuts at: 793 1288 1573 4158 793 Size: 495 285 2585 3012 Fragments arranged by size: 3012 2585 495 285 FspAI rTGC'GCAy Cuts at: 1573 1573 Size: 6377 HaeII r_GCGC'y Cuts at: 144 399 418 445 566 710 807 1701 3811 Size: 255 19 27 121 144 97 894 2110 Cuts at: 3811 4059 5081 6060 144 Size: 248 1022 979 461 Fragments arranged by size: 2110 1022 979 894 461 255 248 144 121 97 27 19 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1294 1326 1759 1791 4219 4249 4251 4281 1294 Size: 32 433 32 2428 30 2 30 3390 Fragments arranged by size: 3390 2428 433 32 32 30 30 2 HincII GTy'rAC Cuts at: 2817 3416 2817 Size: 599 5778 KasI G'GCGC_C Cuts at: 706 3807 4055 706 Size: 3101 248 3028 Fragments arranged by size: 3101 3028 248 KpnI G_GTAC'C Cuts at: 1587 2739 3397 1587 Size: 1152 658 4567 Fragments arranged by size: 4567 1152 658 MluI A'CGCG_T Cuts at: 5810 5810 Size: 6377 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1724 5048 5232 1724 Size: 3324 184 2869 Fragments arranged by size: 3324 2869 184 MscI TGG'CCA Cuts at: 670 868 1000 1330 2173 3181 4138 670 Size: 198 132 330 843 1008 957 2909 Fragments arranged by size: 2909 1008 957 843 330 198 132 MslI CAynn'nnrTG Cuts at: 850 856 953 1222 1234 1240 2935 3008 4366 Size: 6 97 269 12 6 1695 73 1358 Cuts at: 4366 4493 850 Size: 127 2734 Fragments arranged by size: 2734 1695 1358 269 127 97 73 12 6 6 MspA1I CmG'CkG Cuts at: 225 663 996 1437 2300 2900 2944 3488 3802 Size: 438 333 441 863 600 44 544 314 Cuts at: 3802 4162 5175 5420 225 Size: 360 1013 245 1182 Fragments arranged by size: 1182 1013 863 600 544 441 438 360 333 314 245 44 NaeI GCC'GGC Cuts at: 4558 4558 Size: 6377 NarI GG'CG_CC Cuts at: 707 3808 4056 707 Size: 3101 248 3028 Fragments arranged by size: 3101 3028 248 NcoI C'CATG_G Cuts at: 851 2645 3105 851 Size: 1794 460 4123 Fragments arranged by size: 4123 1794 460 NgoMIV G'CCGG_C Cuts at: 4556 4556 Size: 6377 NspI r_CATG'y Cuts at: 558 912 1089 1188 1239 1728 3001 3430 3930 Size: 354 177 99 51 489 1273 429 500 Cuts at: 3930 4837 558 Size: 907 2098 Fragments arranged by size: 2098 1273 907 500 489 429 354 177 99 51 PciI A'CATG_T Cuts at: 1184 4833 1184 Size: 3649 2728 PflMI CCAn_nnn'nTGG Cuts at: 603 2445 2985 603 Size: 1842 540 3995 Fragments arranged by size: 3995 1842 540 PfoI T'CCnGG_A Cuts at: 1853 2497 1853 Size: 644 5733 PmeI GTTT'AAAC Cuts at: 3376 3376 Size: 6377 PmlI CAC'GTG Cuts at: 2694 2694 Size: 6377 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 5516 5548 5516 Size: 32 6345 PpuMI rG'GwC_Cy Cuts at: 297 744 1440 2505 297 Size: 447 696 1065 4169 Fragments arranged by size: 4169 1065 696 447 PshAI GACnn'nnGTC Cuts at: 1660 1660 Size: 6377 PspOMI G'GGCC_C Cuts at: 168 1901 3134 168 Size: 1733 1233 3411 Fragments arranged by size: 3411 1733 1233 PspXI vC'TCGA_Gb Cuts at: 1588 1588 Size: 6377 PstI C_TGCA'G Cuts at: 662 2299 2949 3424 4109 662 Size: 1637 650 475 685 2930 Fragments arranged by size: 2930 1637 685 650 475 PvuI CG_AT'CG Cuts at: 104 104 Size: 6377 PvuII CAG'CTG Cuts at: 663 996 2300 2944 3802 4162 663 Size: 333 1304 644 858 360 2878 Fragments arranged by size: 2878 1304 858 644 360 333 RsrII CG'GwC_CG Cuts at: 4572 4572 Size: 6377 SacI G_AGCT'C Cuts at: 1046 2879 3391 1046 Size: 1833 512 4032 Fragments arranged by size: 4032 1833 512 SalI G'TCGA_C Cuts at: 3414 3414 Size: 6377 SanDI GG'GwC_CC Cuts at: 297 1440 297 Size: 1143 5234 SapI GCTCTTCn'nnn_ Cuts at: 2404 4400 4610 2404 Size: 1996 210 4171 Fragments arranged by size: 4171 1996 210 SbfI CC_TGCA'GG Cuts at: 3424 3424 Size: 6377 ScaI AGT'ACT Cuts at: 5894 5894 Size: 6377 SexAI A'CCwGG_T Cuts at: 1475 2390 2531 1475 Size: 915 141 5321 Fragments arranged by size: 5321 915 141 SfcI C'TryA_G Cuts at: 33 658 2295 2945 3420 4105 5098 5289 33 Size: 625 1637 650 475 685 993 191 1121 Fragments arranged by size: 1637 1121 993 685 650 625 475 191 SfiI GGCCn_nnn'nGGCC Cuts at: 2383 2383 Size: 6377 SfoI GGC'GCC Cuts at: 708 3809 4057 708 Size: 3101 248 3028 Fragments arranged by size: 3101 3028 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6377 SmaI CCC'GGG Cuts at: 742 1900 3399 742 Size: 1158 1499 3720 Fragments arranged by size: 3720 1499 1158 SmlI C'TyrA_G Cuts at: 883 1450 1588 2058 3532 4447 4939 5201 883 Size: 567 138 470 1474 915 492 262 2059 Fragments arranged by size: 2059 1474 915 567 492 470 262 138 SnaBI TAC'GTA Cuts at: 3369 3369 Size: 6377 SpeI A'CTAG_T Cuts at: 67 67 Size: 6377 SphI G_CATG'C Cuts at: 558 912 1089 3001 3430 3930 558 Size: 354 177 1912 429 500 3005 Fragments arranged by size: 3005 1912 500 429 354 177 StuI AGG'CCT Cuts at: 1680 2237 2444 1680 Size: 557 207 5613 Fragments arranged by size: 5613 557 207 StyI C'CwwG_G Cuts at: 134 410 851 1016 1070 1535 1733 2439 2645 Size: 276 441 165 54 465 198 706 206 Cuts at: 2645 3105 3511 3865 134 Size: 460 406 354 2646 Fragments arranged by size: 2646 706 465 460 441 406 354 276 206 198 165 54 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 654 1905 1978 2316 3960 4093 4552 4761 654 Size: 1251 73 338 1644 133 459 209 2270 Fragments arranged by size: 2270 1644 1251 459 338 209 133 73 TatI w'GTAC_w Cuts at: 533 2016 5892 533 Size: 1483 3876 1018 Fragments arranged by size: 3876 1483 1018 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 629 661 1306 1338 5894 5926 629 Size: 32 645 32 4556 32 1080 Fragments arranged by size: 4556 1080 645 32 32 32 Tth111I GACn'n_nGTC Cuts at: 2755 4174 2755 Size: 1419 4958 XbaI T'CTAG_A Cuts at: 3408 3408 Size: 6377 XcmI CCAnnnn_n'nnnnTGG Cuts at: 261 324 648 1023 2420 2529 3872 261 Size: 63 324 375 1397 109 1343 2766 Fragments arranged by size: 2766 1397 1343 375 324 109 63 XhoI C'TCGA_G Cuts at: 1588 2058 1588 Size: 470 5907 XmaI C'CCGG_G Cuts at: 740 1898 3397 740 Size: 1158 1499 3720 Fragments arranged by size: 3720 1499 1158 XmnI GAAnn'nnTTC Cuts at: 2614 2614 Size: 6377 Enzymes that do cut: AarI AccI Acc65I AclI AcuI AflIII AgeI AhdI AleI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BaeI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsiWI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI FspAI HaeII Hin4I HincII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NspI PciI PflMI PfoI PmeI PmlI PpiI PpuMI PshAI PspOMI PspXI PstI PvuI PvuII RsrII SacI SalI SanDI SapI SbfI ScaI SexAI SfcI SfiI SfoI SgfI SmaI SmlI SnaBI SpeI SphI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI Enzymes that do not cut: AatII AfeI AflII AlfI AloI AscI AvrII BfrBI BmtI BssHII BstZ17I ClaI CspCI EcoRV FseI HindIII HpaI MfeI NdeI NheI NotI NruI NsiI PacI PasI PsiI PsrI SacII SgrAI SrfI SspI SwaI ZraI