FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0039, 466 aa
  1>>>pF1KSDA0039 466 - 466 aa - 466 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8049+/-0.000934; mu= -4.2641+/- 0.057
 mean_var=292.4702+/-58.566, 0's: 0 Z-trim(115.3): 1  B-trim: 14 in 1/54
 Lambda= 0.074995
 statistics sampled from 15838 (15839) to 15838 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.487), width:  16
 Scan time:  3.170

The best scores are:                                      opt bits E(32554)
CCDS8233.1 POLD3 gene_id:10714|Hs108|chr11         ( 466) 3009 338.4 9.3e-93


>>CCDS8233.1 POLD3 gene_id:10714|Hs108|chr11              (466 aa)
 initn: 3009 init1: 3009 opt: 3009  Z-score: 1778.8  bits: 338.4 E(32554): 9.3e-93
Smith-Waterman score: 3009; 100.0% identity (100.0% similar) in 466 aa overlap (1-466:1-466)

               10        20        30        40        50        60
pF1KSD MADQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYDYVERKRKENSGAQLHVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MADQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYDYVERKRKENSGAQLHVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD YLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDSGPLFNTDYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 YLVSGSLIQNGHSCHKVAVVREDKLEAVKSKLAVTASIHVYSIQKAMLKDSGPLFNTDYD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD ILKSNLQNCSKFSAIQCAAAVPRAPAESSSSSKKFEQSHLHMSSETQANNELTTNGHGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ILKSNLQNCSKFSAIQCAAAVPRAPAESSSSSKKFEQSHLHMSSETQANNELTTNGHGPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD ASKQVSQQPKGIMGMFASKAAAKTQETNKETKTEAKEVTNASAAGNKAPGKGNMMSNFFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ASKQVSQQPKGIMGMFASKAAAKTQETNKETKTEAKEVTNASAAGNKAPGKGNMMSNFFG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD KAAMNKFKVNLDSEQAVKEEKIVEQPTVSVTEPKLATPAGLKKSSKKAEPVKVLQKEKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KAAMNKFKVNLDSEQAVKEEKIVEQPTVSVTEPKLATPAGLKKSSKKAEPVKVLQKEKKR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD GKRVALSDDETKETENMRKKRRRIKLPESDSSEDEVFPDSPGAYEAESPSPPPPPSPPLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GKRVALSDDETKETENMRKKRRRIKLPESDSSEDEVFPDSPGAYEAESPSPPPPPSPPLE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD PVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLDGEGCIVTEKVYESESCTDSEEELNMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PVPKTEPEPPSVKSSSGENKRKRKRVLKSKTYLDGEGCIVTEKVYESESCTDSEEELNMK
              370       380       390       400       410       420

              430       440       450       460      
pF1KSD TSSVHRPPAMTVKKEPREERKGPKKGTAALGKANRQVSITGFFQRK
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TSSVHRPPAMTVKKEPREERKGPKKGTAALGKANRQVSITGFFQRK
              430       440       450       460      




466 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:35:23 2016 done: Wed Nov  2 23:35:24 2016
 Total Scan time:  3.170 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]