Result of FASTA (ccds) for
pF1KSDA0049
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0049, 966 aa
1>>>pF1KSDA0049 966 - 966 aa - 966 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3973+/-0.000949; mu= 7.9833+/- 0.058
mean_var=168.7833+/-33.677, 0's: 0 Z-trim(111.7): 19 B-trim: 0 in 0/50
Lambda= 0.098721
statistics sampled from 12598 (12609) to 12598 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.387), width: 16
Scan time: 4.960
The best scores are: opt bits E(32554)
CCDS45694.1 NBR1 gene_id:4077|Hs108|chr17 ( 966) 6477 935.2 0
CCDS77037.1 NBR1 gene_id:4077|Hs108|chr17 ( 937) 6095 880.7 0
CCDS77038.1 NBR1 gene_id:4077|Hs108|chr17 ( 837) 5386 779.7 0
>>CCDS45694.1 NBR1 gene_id:4077|Hs108|chr17 (966 aa)
initn: 6477 init1: 6477 opt: 6477 Z-score: 4992.3 bits: 935.2 E(32554): 0
Smith-Waterman score: 6477; 100.0% identity (100.0% similar) in 966 aa overlap (1-966:1-966)
10 20 30 40 50 60
pF1KSD MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD QGEYEEALKMAVKQGNQLQMQVHEGHHVVDEAPPPVVGAKRLAARAGKKPLAHYSSLVRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QGEYEEALKMAVKQGNQLQMQVHEGHHVVDEAPPPVVGAKRLAARAGKKPLAHYSSLVRV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD LGSDMKTPEDPAVQSFPLVPCDTDQPQDKPPDWFTSYLETFREQVVNETVEKLEQKLHEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LGSDMKTPEDPAVQSFPLVPCDTDQPQDKPPDWFTSYLETFREQVVNETVEKLEQKLHEK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LVLQNPSLGSCPSEVSMPTSEETLFLPENQFSWHIACNNCQRRIVGVRYQCSLCPSYNIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LVLQNPSLGSCPSEVSMPTSEETLFLPENQFSWHIACNNCQRRIVGVRYQCSLCPSYNIC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD EDCEAGPYGHDTNHVLLKLRRPVVGSSEPFCHSKYSTPRLPAALEQVRLQKQVDKNFLKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EDCEAGPYGHDTNHVLLKLRRPVVGSSEPFCHSKYSTPRLPAALEQVRLQKQVDKNFLKA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD EKQRLRAEKKQRKAEVKELKKQLKLHRKIHLWNSIHGLQSPKSPLGRPESLLQSNTLMLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EKQRLRAEKKQRKAEVKELKKQLKLHRKIHLWNSIHGLQSPKSPLGRPESLLQSNTLMLP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LQPCTSVMPMLSAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LQPCTSVMPMLSAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LASTEKKDVLVPCLKAGHVGVVSVEFIAPALEGTYTSHWRLSHKGQQFGPRVWCSIIVDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LASTEKKDVLVPCLKAGHVGVVSVEFIAPALEGTYTSHWRLSHKGQQFGPRVWCSIIVDP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD FPSEESPDNIEKGMISSSKTDDLTCQQEETFLLAKEERQLGEVTEQTEGTAACIPQKAKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FPSEESPDNIEKGMISSSKTDDLTCQQEETFLLAKEERQLGEVTEQTEGTAACIPQKAKN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD VASERELYIPSVDLLTAQDLLSFELLDINIVQELERVPHNTPVDVTPCMSPLPHDSPLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VASERELYIPSVDLLTAQDLLSFELLDINIVQELERVPHNTPVDVTPCMSPLPHDSPLIE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD KPGLGQIEEENEGAGFKALPDSMVSVKRKAENIASVEEAEEDLSGTQFVCETVIRSLTLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KPGLGQIEEENEGAGFKALPDSMVSVKRKAENIASVEEAEEDLSGTQFVCETVIRSLTLD
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD AAPDHNPPCRQKSLQMTFALPEGPLGNEKEEIIHIAEEEAVMEEEEDEEDEEEEDELKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AAPDHNPPCRQKSLQMTFALPEGPLGNEKEEIIHIAEEEAVMEEEEDEEDEEEEDELKDE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD VQSQSSASSEDYIIILPECFDTSRPLGDSMYSSALSQPGLERGAEGKPGVEAGQEPAEAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VQSQSSASSEDYIIILPECFDTSRPLGDSMYSSALSQPGLERGAEGKPGVEAGQEPAEAG
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD ERLPGGENQPQEHSISDILTTSQTLETVPLIPEVVELPPSLPRSSPCVHHHGSPGVDLPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ERLPGGENQPQEHSISDILTTSQTLETVPLIPEVVELPPSLPRSSPCVHHHGSPGVDLPV
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD TIPEVSSVPDQIRGEPRGSSGLVNSRQKSYDHSRHHHGSSIAGGLVKGALSVAASAYKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TIPEVSSVPDQIRGEPRGSSGLVNSRQKSYDHSRHHHGSSIAGGLVKGALSVAASAYKAL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD FAGPPVTAQPIISEDQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLNNND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FAGPPVTAQPIISEDQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLNNND
910 920 930 940 950 960
pF1KSD WYSQRY
::::::
CCDS45 WYSQRY
>>CCDS77037.1 NBR1 gene_id:4077|Hs108|chr17 (937 aa)
initn: 6095 init1: 6095 opt: 6095 Z-score: 4698.5 bits: 880.7 E(32554): 0
Smith-Waterman score: 6095; 100.0% identity (100.0% similar) in 909 aa overlap (1-909:1-909)
10 20 30 40 50 60
pF1KSD MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD QGEYEEALKMAVKQGNQLQMQVHEGHHVVDEAPPPVVGAKRLAARAGKKPLAHYSSLVRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QGEYEEALKMAVKQGNQLQMQVHEGHHVVDEAPPPVVGAKRLAARAGKKPLAHYSSLVRV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD LGSDMKTPEDPAVQSFPLVPCDTDQPQDKPPDWFTSYLETFREQVVNETVEKLEQKLHEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LGSDMKTPEDPAVQSFPLVPCDTDQPQDKPPDWFTSYLETFREQVVNETVEKLEQKLHEK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LVLQNPSLGSCPSEVSMPTSEETLFLPENQFSWHIACNNCQRRIVGVRYQCSLCPSYNIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LVLQNPSLGSCPSEVSMPTSEETLFLPENQFSWHIACNNCQRRIVGVRYQCSLCPSYNIC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD EDCEAGPYGHDTNHVLLKLRRPVVGSSEPFCHSKYSTPRLPAALEQVRLQKQVDKNFLKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EDCEAGPYGHDTNHVLLKLRRPVVGSSEPFCHSKYSTPRLPAALEQVRLQKQVDKNFLKA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD EKQRLRAEKKQRKAEVKELKKQLKLHRKIHLWNSIHGLQSPKSPLGRPESLLQSNTLMLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EKQRLRAEKKQRKAEVKELKKQLKLHRKIHLWNSIHGLQSPKSPLGRPESLLQSNTLMLP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LQPCTSVMPMLSAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LQPCTSVMPMLSAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LASTEKKDVLVPCLKAGHVGVVSVEFIAPALEGTYTSHWRLSHKGQQFGPRVWCSIIVDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LASTEKKDVLVPCLKAGHVGVVSVEFIAPALEGTYTSHWRLSHKGQQFGPRVWCSIIVDP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD FPSEESPDNIEKGMISSSKTDDLTCQQEETFLLAKEERQLGEVTEQTEGTAACIPQKAKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FPSEESPDNIEKGMISSSKTDDLTCQQEETFLLAKEERQLGEVTEQTEGTAACIPQKAKN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD VASERELYIPSVDLLTAQDLLSFELLDINIVQELERVPHNTPVDVTPCMSPLPHDSPLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VASERELYIPSVDLLTAQDLLSFELLDINIVQELERVPHNTPVDVTPCMSPLPHDSPLIE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD KPGLGQIEEENEGAGFKALPDSMVSVKRKAENIASVEEAEEDLSGTQFVCETVIRSLTLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KPGLGQIEEENEGAGFKALPDSMVSVKRKAENIASVEEAEEDLSGTQFVCETVIRSLTLD
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD AAPDHNPPCRQKSLQMTFALPEGPLGNEKEEIIHIAEEEAVMEEEEDEEDEEEEDELKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AAPDHNPPCRQKSLQMTFALPEGPLGNEKEEIIHIAEEEAVMEEEEDEEDEEEEDELKDE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD VQSQSSASSEDYIIILPECFDTSRPLGDSMYSSALSQPGLERGAEGKPGVEAGQEPAEAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VQSQSSASSEDYIIILPECFDTSRPLGDSMYSSALSQPGLERGAEGKPGVEAGQEPAEAG
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD ERLPGGENQPQEHSISDILTTSQTLETVPLIPEVVELPPSLPRSSPCVHHHGSPGVDLPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ERLPGGENQPQEHSISDILTTSQTLETVPLIPEVVELPPSLPRSSPCVHHHGSPGVDLPV
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD TIPEVSSVPDQIRGEPRGSSGLVNSRQKSYDHSRHHHGSSIAGGLVKGALSVAASAYKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 TIPEVSSVPDQIRGEPRGSSGLVNSRQKSYDHSRHHHGSSIAGGLVKGALSVAASAYKAL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD FAGPPVTAQPIISEDQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLNNND
:::::::::
CCDS77 FAGPPVTAQGLWGLLSFLHLAKKCFFLKAPSEAFSWF
910 920 930
>>CCDS77038.1 NBR1 gene_id:4077|Hs108|chr17 (837 aa)
initn: 5386 init1: 5386 opt: 5386 Z-score: 4153.5 bits: 779.7 E(32554): 0
Smith-Waterman score: 5555; 97.5% identity (97.5% similar) in 854 aa overlap (1-854:1-833)
10 20 30 40 50 60
pF1KSD MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINS
::::::::::::::::::::::::::::::::::: ::::
CCDS77 MEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMV---------------------SINS
10 20 30
70 80 90 100 110 120
pF1KSD QGEYEEALKMAVKQGNQLQMQVHEGHHVVDEAPPPVVGAKRLAARAGKKPLAHYSSLVRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QGEYEEALKMAVKQGNQLQMQVHEGHHVVDEAPPPVVGAKRLAARAGKKPLAHYSSLVRV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KSD LGSDMKTPEDPAVQSFPLVPCDTDQPQDKPPDWFTSYLETFREQVVNETVEKLEQKLHEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LGSDMKTPEDPAVQSFPLVPCDTDQPQDKPPDWFTSYLETFREQVVNETVEKLEQKLHEK
100 110 120 130 140 150
190 200 210 220 230 240
pF1KSD LVLQNPSLGSCPSEVSMPTSEETLFLPENQFSWHIACNNCQRRIVGVRYQCSLCPSYNIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LVLQNPSLGSCPSEVSMPTSEETLFLPENQFSWHIACNNCQRRIVGVRYQCSLCPSYNIC
160 170 180 190 200 210
250 260 270 280 290 300
pF1KSD EDCEAGPYGHDTNHVLLKLRRPVVGSSEPFCHSKYSTPRLPAALEQVRLQKQVDKNFLKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EDCEAGPYGHDTNHVLLKLRRPVVGSSEPFCHSKYSTPRLPAALEQVRLQKQVDKNFLKA
220 230 240 250 260 270
310 320 330 340 350 360
pF1KSD EKQRLRAEKKQRKAEVKELKKQLKLHRKIHLWNSIHGLQSPKSPLGRPESLLQSNTLMLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EKQRLRAEKKQRKAEVKELKKQLKLHRKIHLWNSIHGLQSPKSPLGRPESLLQSNTLMLP
280 290 300 310 320 330
370 380 390 400 410 420
pF1KSD LQPCTSVMPMLSAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LQPCTSVMPMLSAAFVDENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLT
340 350 360 370 380 390
430 440 450 460 470 480
pF1KSD LASTEKKDVLVPCLKAGHVGVVSVEFIAPALEGTYTSHWRLSHKGQQFGPRVWCSIIVDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LASTEKKDVLVPCLKAGHVGVVSVEFIAPALEGTYTSHWRLSHKGQQFGPRVWCSIIVDP
400 410 420 430 440 450
490 500 510 520 530 540
pF1KSD FPSEESPDNIEKGMISSSKTDDLTCQQEETFLLAKEERQLGEVTEQTEGTAACIPQKAKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FPSEESPDNIEKGMISSSKTDDLTCQQEETFLLAKEERQLGEVTEQTEGTAACIPQKAKN
460 470 480 490 500 510
550 560 570 580 590 600
pF1KSD VASERELYIPSVDLLTAQDLLSFELLDINIVQELERVPHNTPVDVTPCMSPLPHDSPLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VASERELYIPSVDLLTAQDLLSFELLDINIVQELERVPHNTPVDVTPCMSPLPHDSPLIE
520 530 540 550 560 570
610 620 630 640 650 660
pF1KSD KPGLGQIEEENEGAGFKALPDSMVSVKRKAENIASVEEAEEDLSGTQFVCETVIRSLTLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KPGLGQIEEENEGAGFKALPDSMVSVKRKAENIASVEEAEEDLSGTQFVCETVIRSLTLD
580 590 600 610 620 630
670 680 690 700 710 720
pF1KSD AAPDHNPPCRQKSLQMTFALPEGPLGNEKEEIIHIAEEEAVMEEEEDEEDEEEEDELKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AAPDHNPPCRQKSLQMTFALPEGPLGNEKEEIIHIAEEEAVMEEEEDEEDEEEEDELKDE
640 650 660 670 680 690
730 740 750 760 770 780
pF1KSD VQSQSSASSEDYIIILPECFDTSRPLGDSMYSSALSQPGLERGAEGKPGVEAGQEPAEAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VQSQSSASSEDYIIILPECFDTSRPLGDSMYSSALSQPGLERGAEGKPGVEAGQEPAEAG
700 710 720 730 740 750
790 800 810 820 830 840
pF1KSD ERLPGGENQPQEHSISDILTTSQTLETVPLIPEVVELPPSLPRSSPCVHHHGSPGVDLPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ERLPGGENQPQEHSISDILTTSQTLETVPLIPEVVELPPSLPRSSPCVHHHGSPGVDLPV
760 770 780 790 800 810
850 860 870 880 890 900
pF1KSD TIPEVSSVPDQIRGEPRGSSGLVNSRQKSYDHSRHHHGSSIAGGLVKGALSVAASAYKAL
::::::::::::::
CCDS77 TIPEVSSVPDQIRGANNF
820 830
966 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 23:38:06 2016 done: Wed Nov 2 23:38:07 2016
Total Scan time: 4.960 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]