FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0063, 202 aa
  1>>>pF1KSDA0063 202 - 202 aa - 202 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9198+/-0.000649; mu= 15.1153+/- 0.039
 mean_var=56.8256+/-11.486, 0's: 0 Z-trim(109.9): 15  B-trim: 6 in 1/50
 Lambda= 0.170138
 statistics sampled from 11243 (11251) to 11243 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.346), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS13976.1 JOSD1 gene_id:9929|Hs108|chr22         ( 202) 1405 352.4 1.1e-97
CCDS12797.1 JOSD2 gene_id:126119|Hs108|chr19       ( 188)  677 173.7 6.3e-44
CCDS59413.1 JOSD2 gene_id:126119|Hs108|chr19       ( 146)  331 88.7 1.9e-18


>>CCDS13976.1 JOSD1 gene_id:9929|Hs108|chr22              (202 aa)
 initn: 1405 init1: 1405 opt: 1405  Z-score: 1867.4  bits: 352.4 E(32554): 1.1e-97
Smith-Waterman score: 1405; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)

               10        20        30        40        50        60
pF1KSD MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
              130       140       150       160       170       180

              190       200  
pF1KSD NCELLLVVPEEVEAHQSWRTDV
       ::::::::::::::::::::::
CCDS13 NCELLLVVPEEVEAHQSWRTDV
              190       200  

>>CCDS12797.1 JOSD2 gene_id:126119|Hs108|chr19            (188 aa)
 initn: 613 init1: 482 opt: 677  Z-score: 902.1  bits: 173.7 E(32554): 6.3e-44
Smith-Waterman score: 677; 55.2% identity (79.2% similar) in 183 aa overlap (20-201:8-188)

               10        20        30        40        50        60
pF1KSD MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
                          : .:: .:::.:: ::::.::::::.:..  :.... .:: 
CCDS12             MSQAPGAQPSPPTVYHERQRLELCAVHALNNVLQQQ-LFSQEAADEIC
                           10        20        30         40       

               70        80        90       100       110       120
pF1KSD QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
       .::.:.. ..::. :.::.:::::::::::::  :  :::::.:: .. .:: .:.:.:.
CCDS12 KRLAPDSRLNPHR-SLLGTGNYDVNVIMAALQGLGLAAVWWDRRRPLSQLALPQVLGLIL
        50        60         70        80        90       100      

              130       140       150       160       170       180
pF1KSD NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
       :::: .  : :.:::.:.::. .:.: :.::::::::. :: .: :. .: ::   :   
CCDS12 NLPSPVSLGLLSLPLRRRHWVALRQVDGVYYNLDSKLRAPEALGDEDGVRAFLAAALAQG
        110       120       130       140       150       160      

              190        200  
pF1KSD NCELLLVVPEEVEAHQSW-RTDV
        ::.:::: .::: . :: ::: 
CCDS12 LCEVLLVVTKEVEEKGSWLRTD 
        170       180         

>>CCDS59413.1 JOSD2 gene_id:126119|Hs108|chr19            (146 aa)
 initn: 451 init1: 320 opt: 331  Z-score: 444.8  bits: 88.7 E(32554): 1.9e-18
Smith-Waterman score: 384; 39.3% identity (58.5% similar) in 183 aa overlap (20-201:8-146)

               10        20        30        40        50        60
pF1KSD MSCVPWKGDKAKSESLELPQAAPPQIYHEKQRRELCALHALNNVFQDSNAFTRDTLQEIF
                          : .:: .:::.:: ::::.::::::.:          :..:
CCDS59             MSQAPGAQPSPPTVYHERQRLELCAVHALNNVLQ----------QQLF
                           10        20        30                  

               70        80        90       100       110       120
pF1KSD QRLSPNTMVTPHKKSMLGNGNYDVNVIMAALQTKGYEAVWWDKRRDVGVIALTNVMGFIM
       .. . . .                                   .: .. .:: .:.:.:.
CCDS59 SQEAADEIC----------------------------------KRPLSQLALPQVLGLIL
       40                                          50        60    

              130       140       150       160       170       180
pF1KSD NLPSSLCWGPLKLPLKRQHWICVREVGGAYYNLDSKLKMPEWIGGESELRKFLKHHLRGK
       :::: .  : :.:::.:.::. .:.: :.::::::::. :: .: :. .: ::   :   
CCDS59 NLPSPVSLGLLSLPLRRRHWVALRQVDGVYYNLDSKLRAPEALGDEDGVRAFLAAALAQG
           70        80        90       100       110       120    

              190        200  
pF1KSD NCELLLVVPEEVEAHQSW-RTDV
        ::.:::: .::: . :: ::: 
CCDS59 LCEVLLVVTKEVEEKGSWLRTD 
          130       140       




202 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:41:43 2016 done: Wed Nov  2 23:41:43 2016
 Total Scan time:  1.930 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]