Result of FASTA (ccds) for
pF1KSDA0064
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0064, 470 aa
1>>>pF1KSDA0064 470 - 470 aa - 470 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7566+/-0.000809; mu= 15.8736+/- 0.049
mean_var=74.3173+/-14.660, 0's: 0 Z-trim(107.7): 33 B-trim: 0 in 0/52
Lambda= 0.148775
statistics sampled from 9728 (9749) to 9728 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.299), width: 16
Scan time: 2.900
The best scores are: opt bits E(32554)
CCDS1750.1 SNX17 gene_id:9784|Hs108|chr2 ( 470) 3046 663.1 1.8e-190
CCDS58704.1 SNX17 gene_id:9784|Hs108|chr2 ( 445) 2734 596.1 2.4e-170
CCDS6288.1 SNX31 gene_id:169166|Hs108|chr8 ( 440) 1061 237.0 3e-62
CCDS1001.1 SNX27 gene_id:81609|Hs108|chr1 ( 528) 406 96.5 7.3e-20
CCDS81377.1 SNX27 gene_id:81609|Hs108|chr1 ( 541) 406 96.5 7.5e-20
>>CCDS1750.1 SNX17 gene_id:9784|Hs108|chr2 (470 aa)
initn: 3046 init1: 3046 opt: 3046 Z-score: 3533.2 bits: 663.1 E(32554): 1.8e-190
Smith-Waterman score: 3046; 100.0% identity (100.0% similar) in 470 aa overlap (1-470:1-470)
10 20 30 40 50 60
pF1KSD MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE
370 380 390 400 410 420
430 440 450 460 470
pF1KSD SPDATRESMVKLSSKLSAVSLRGIGSPSTDASASDVHGNFAFEGIGDEDL
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 SPDATRESMVKLSSKLSAVSLRGIGSPSTDASASDVHGNFAFEGIGDEDL
430 440 450 460 470
>>CCDS58704.1 SNX17 gene_id:9784|Hs108|chr2 (445 aa)
initn: 2859 init1: 2734 opt: 2734 Z-score: 3171.7 bits: 596.1 E(32554): 2.4e-170
Smith-Waterman score: 2813; 94.7% identity (94.7% similar) in 470 aa overlap (1-470:1-445)
10 20 30 40 50 60
pF1KSD MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP
::::::::::::::::::::: ::::::::::::::
CCDS58 MHFSIPETESRSGDSGGSAYV-------------------------LRKEYGANVLPAFP
10 20 30
70 80 90 100 110 120
pF1KSD PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KSD VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQ
100 110 120 130 140 150
190 200 210 220 230 240
pF1KSD EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVT
160 170 180 190 200 210
250 260 270 280 290 300
pF1KSD KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQ
220 230 240 250 260 270
310 320 330 340 350 360
pF1KSD LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQ
280 290 300 310 320 330
370 380 390 400 410 420
pF1KSD WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 WVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLE
340 350 360 370 380 390
430 440 450 460 470
pF1KSD SPDATRESMVKLSSKLSAVSLRGIGSPSTDASASDVHGNFAFEGIGDEDL
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SPDATRESMVKLSSKLSAVSLRGIGSPSTDASASDVHGNFAFEGIGDEDL
400 410 420 430 440
>>CCDS6288.1 SNX31 gene_id:169166|Hs108|chr8 (440 aa)
initn: 913 init1: 782 opt: 1061 Z-score: 1231.1 bits: 237.0 E(32554): 3e-62
Smith-Waterman score: 1061; 43.4% identity (74.4% similar) in 387 aa overlap (1-386:3-382)
10 20 30 40 50
pF1KSD MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPA
::: :: ...:: :. :. :: :..:..: : :::::::: : .::::. .: : ::
CCDS62 MKMHFCIPVSQQRS-DALGGRYVLYSVHLDGFLFCRVRYSQLHGWNEQLRRVFG-NCLPP
10 20 30 40 50
60 70 80 90 100 110
pF1KSD FPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVS
:::: ...: : ...::.:::.:.: : .:: . :..: ::. :: .: .. :...
CCDS62 FPPKYYLAMTTAMADERRDQLEQYLQNVTMDPNVLRSDVFVEFLKLAQLNTFDIATKKAY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KSD LEVLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRK
:...: : :.. ....::: .: :::.:. :. : .:.:::.:::.: ..: .: :.:
CCDS62 LDIFLPNEQSIRIEIITSDTAERVLEVVSHKIGLCRELLGYFGLFLIRFGKEGKLSVVKK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KSD LQEFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWIL
: .:::::::. : . .. :. ::: : . :. .:. ::...::: :...:::.::
CCDS62 LADFELPYVSLGSSEVENCKVGLRKWYMAPSLDSVLMDCRVAVDLLYMQAIQDIEKGWAK
180 190 200 210 220 230
240 250 260 270 280 290
pF1KSD VTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELS
:. :...:...:.. :. .::.::. .::::::..: :. :.::. .:.:.::.:.:
CCDS62 PTQAQRQKLEAFQKEDSQTKFLELAREVRHYGYLQLDPCTCDYPESGSGAVLSVGNNEIS
240 250 260 270 280 290
300 310 320 330 340 350
pF1KSD LQLRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDR
. :: .: .. :...:..::.:: : . :..: : .. ::: :.: :.:
CCDS62 CCITLPDSQTQDIVFQMSRVKCWQVTFLGTLLD--TDGPQRTLNQ-NLELRFQY--SEDS
300 310 320 330 340 350
360 370 380 390 400 410
pF1KSD L-QWVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPP
:: .: . ::...: ::..:..: :::
CCDS62 CWQWFVIYTKQAFLLSSCLKKMISEKMVKLAAENTEMQIEVPEQSKSKKYHIQQSQQKDY
360 370 380 390 400 410
>>CCDS1001.1 SNX27 gene_id:81609|Hs108|chr1 (528 aa)
initn: 269 init1: 174 opt: 406 Z-score: 470.1 bits: 96.5 E(32554): 7.3e-20
Smith-Waterman score: 436; 25.7% identity (58.1% similar) in 389 aa overlap (4-387:166-525)
10 20 30
pF1KSD MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHC
:.:. . ...: .:.::... : :
CCDS10 PPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPR--YKHVEQNGEKFVVYNVYMAGRQLC
140 150 160 170 180 190
40 50 60 70 80 90
pF1KSD RVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLG
:: .. ::..:..:.. ..: .: : :::. ... ::. ::.:.. : . ..:
CCDS10 SKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIG
200 210 220 230 240 250
100 110 120 130 140 150
pF1KSD SSETFNSFLRRAQQETQQVPTEEVSLEVLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLP
:. .. :: ..... . : .: :.: : .: : : : .. :..: .:.:::. .
CCDS10 ESDIMQEFLSESDENYNGV--SDVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMD
260 270 280 290 300 310
160 170 180 190 200 210
pF1KSD DDLIGYFSLFLVREKEDGAFSFVRKLQEFELPY-VSVTSLRSQEYKIVLRKSYWDSAYDD
. ..::.:: : . :::::: :.:. . . . : : : . ..
CCDS10 STTVNYFALFEVI-----SHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKWLFTTEE
320 330 340 350 360
220 230 240 250 260 270
pF1KSD DVM--ENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYG
... .: .... .. :.:.:...:.: . .:. ::..: :. . .: . .: . :.
CCDS10 EILLNDNDLAVTYFFHQAVDDVKKGYIKA-EEKSYQLQKLYEQRKMVMYLNMLRTCEGYN
370 380 390 400 410 420
280 290 300 310 320
pF1KSD YLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREG--SFRVTRMRCWRVTSSVP
. : :. : .: :... . ....:. ::.. .:. .:. :
CCDS10 EIIFPHCACDSRRKG-HVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRW-------
430 440 450 460 470
330 340 350 360 370 380
pF1KSD LPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKS
.:. : . . ::: .. . .:: : .: .: :.. . :: .:
CCDS10 ----DTDEEG-------MAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKE
480 490 500 510 520
390 400 410 420 430 440
pF1KSD GGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLESPDATRESMVKLSSKLSAVSLRGIGSPS
CCDS10 EY
>>CCDS81377.1 SNX27 gene_id:81609|Hs108|chr1 (541 aa)
initn: 269 init1: 174 opt: 406 Z-score: 469.9 bits: 96.5 E(32554): 7.5e-20
Smith-Waterman score: 438; 25.8% identity (57.9% similar) in 399 aa overlap (4-397:166-533)
10 20 30
pF1KSD MHFSIPETESRSGDSGGSAYVAYNIHVNGVLHC
:.:. . ...: .:.::... : :
CCDS81 PPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPR--YKHVEQNGEKFVVYNVYMAGRQLC
140 150 160 170 180 190
40 50 60 70 80 90
pF1KSD RVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLG
:: .. ::..:..:.. ..: .: : :::. ... ::. ::.:.. : . ..:
CCDS81 SKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIG
200 210 220 230 240 250
100 110 120 130 140 150
pF1KSD SSETFNSFLRRAQQETQQVPTEEVSLEVLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLP
:. .. :: ..... . : .: :.: : .: : : : .. :..: .:.:::. .
CCDS81 ESDIMQEFLSESDENYNGVS--DVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMD
260 270 280 290 300 310
160 170 180 190 200 210
pF1KSD DDLIGYFSLFLVREKEDGAFSFVRKLQEFELPY-VSVTSLRSQEYKIVLRKSYWDSAYDD
. ..::.:: : . :::::: :.:. . . . : : : . ..
CCDS81 STTVNYFALF-----EVISHSFVRKLAPNEFPHKLYIQNYTSAVPGTCLTIRKWLFTTEE
320 330 340 350 360
220 230 240 250 260 270
pF1KSD DVM--ENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYG
... .: .... .. :.:.:...:.: . .:. ::..: :. . .: . .: . :.
CCDS81 EILLNDNDLAVTYFFHQAVDDVKKGYIKA-EEKSYQLQKLYEQRKMVMYLNMLRTCEGYN
370 380 390 400 410 420
280 290 300 310 320
pF1KSD YLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREG--SFRVTRMRCWRVTSSVP
. : :. : .: :... . ....:. ::.. .:. .:. :
CCDS81 EIIFPHCACDSRRKG-HVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRW-------
430 440 450 460 470
330 340 350 360 370 380
pF1KSD LPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKS
.:. : . . ::: .. . .:: : .: .: :.. . :: .:
CCDS81 ----DTDEEG-------MAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKE
480 490 500 510 520
390 400 410 420 430 440
pF1KSD GGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLESPDATRESMVKLSSKLSAVSLRGIGSPS
.: .: :
CCDS81 --NIFQMARSQQRDVAT
530 540
470 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 23:42:13 2016 done: Wed Nov 2 23:42:14 2016
Total Scan time: 2.900 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]