FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0069, 203 aa
  1>>>pF1KSDA0069 203 - 203 aa - 203 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6865+/-0.000809; mu= 16.0656+/- 0.048
 mean_var=55.3536+/-10.885, 0's: 0 Z-trim(106.3): 13  B-trim: 2 in 1/49
 Lambda= 0.172386
 statistics sampled from 8920 (8924) to 8920 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.274), width:  16
 Scan time:  1.320

The best scores are:                                      opt bits E(32554)
CCDS10572.1 ARL6IP1 gene_id:23204|Hs108|chr16      ( 203) 1345 342.3 1.2e-94
CCDS81951.1 ARL6IP1 gene_id:23204|Hs108|chr16      ( 174) 1161 296.5 6.2e-81


>>CCDS10572.1 ARL6IP1 gene_id:23204|Hs108|chr16           (203 aa)
 initn: 1345 init1: 1345 opt: 1345  Z-score: 1812.8  bits: 342.3 E(32554): 1.2e-94
Smith-Waterman score: 1345; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KSD MAEGDNRSTNLLAAETASLEEQLQGWGEVMLMADKVLRWERAWFPPAIMGVVSLVFLIIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAEGDNRSTNLLAAETASLEEQLQGWGEVMLMADKVLRWERAWFPPAIMGVVSLVFLIIY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD YLDPSVLSGVSCFVMFLCLADYLVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YLDPSVLSGVSCFVMFLCLADYLVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQQVHNLLLTYLIVTSLLLLPGLNQHGII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQQVHNLLLTYLIVTSLLLLPGLNQHGII
              130       140       150       160       170       180

              190       200   
pF1KSD LKYIGMAKREINKLLKQKEKKNE
       :::::::::::::::::::::::
CCDS10 LKYIGMAKREINKLLKQKEKKNE
              190       200   

>>CCDS81951.1 ARL6IP1 gene_id:23204|Hs108|chr16           (174 aa)
 initn: 1161 init1: 1161 opt: 1161  Z-score: 1566.5  bits: 296.5 E(32554): 6.2e-81
Smith-Waterman score: 1161; 100.0% identity (100.0% similar) in 174 aa overlap (30-203:1-174)

               10        20        30        40        50        60
pF1KSD MAEGDNRSTNLLAAETASLEEQLQGWGEVMLMADKVLRWERAWFPPAIMGVVSLVFLIIY
                                    :::::::::::::::::::::::::::::::
CCDS81                              MLMADKVLRWERAWFPPAIMGVVSLVFLIIY
                                            10        20        30 

               70        80        90       100       110       120
pF1KSD YLDPSVLSGVSCFVMFLCLADYLVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 YLDPSVLSGVSCFVMFLCLADYLVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAV
              40        50        60        70        80        90 

              130       140       150       160       170       180
pF1KSD GWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQQVHNLLLTYLIVTSLLLLPGLNQHGII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQQVHNLLLTYLIVTSLLLLPGLNQHGII
             100       110       120       130       140       150 

              190       200   
pF1KSD LKYIGMAKREINKLLKQKEKKNE
       :::::::::::::::::::::::
CCDS81 LKYIGMAKREINKLLKQKEKKNE
             160       170    




203 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:47:12 2016 done: Wed Nov  2 23:47:12 2016
 Total Scan time:  1.320 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]