Result of FASTA (omim) for
pF1KSDA0070
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0070, 597 aa
1>>>pF1KSDA0070 597 - 597 aa - 597 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8978+/-0.000416; mu= 16.0291+/- 0.026
mean_var=80.5524+/-16.748, 0's: 0 Z-trim(112.5): 31 B-trim: 1086 in 2/48
Lambda= 0.142901
statistics sampled from 21468 (21498) to 21468 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.252), width: 16
Scan time: 8.720
The best scores are: opt bits E(85289)
NP_005539 (OMIM: 601421,613641,613916) lysine--tRN ( 597) 3958 826.2 0
NP_001123561 (OMIM: 601421,613641,613916) lysine-- ( 625) 3835 800.8 0
XP_016878706 (OMIM: 601421,613641,613916) PREDICTE ( 441) 2956 619.5 7.1e-177
XP_011508013 (OMIM: 610956,611105) PREDICTED: aspa ( 482) 270 65.8 3.8e-10
XP_006711490 (OMIM: 610956,611105) PREDICTED: aspa ( 594) 270 65.9 4.5e-10
NP_060592 (OMIM: 610956,611105) aspartate--tRNA li ( 645) 270 65.9 4.9e-10
NP_001280241 (OMIM: 603084,615281) aspartate--tRNA ( 401) 153 41.6 0.006
XP_016858978 (OMIM: 603084,615281) PREDICTED: aspa ( 468) 153 41.7 0.0068
NP_001340 (OMIM: 603084,615281) aspartate--tRNA li ( 501) 153 41.7 0.0072
>>NP_005539 (OMIM: 601421,613641,613916) lysine--tRNA li (597 aa)
initn: 3958 init1: 3958 opt: 3958 Z-score: 4410.9 bits: 826.2 E(85289): 0
Smith-Waterman score: 3958; 99.8% identity (100.0% similar) in 597 aa overlap (1-597:1-597)
10 20 30 40 50 60
pF1KSD MAAVQAAEVKVDGSEPKLSKNELKRRLKAEKKVAEKEAKQKELSEKQLSQATAAATNHTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MAAVQAAEVKVDGSEPKLSKNELKRRLKAEKKVAEKEAKQKELSEKQLSQATAAATNHTT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD IIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD MVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD KILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD GLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYG
490 500 510 520 530 540
550 560 570 580 590
pF1KSD LPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLESTTVGSSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
NP_005 LPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLESTTVGTSV
550 560 570 580 590
>>NP_001123561 (OMIM: 601421,613641,613916) lysine--tRNA (625 aa)
initn: 3835 init1: 3835 opt: 3835 Z-score: 4273.5 bits: 800.8 E(85289): 0
Smith-Waterman score: 3835; 99.5% identity (100.0% similar) in 578 aa overlap (20-597:48-625)
10 20 30 40
pF1KSD MAAVQAAEVKVDGSEPKLSKNELKRRLKAEKKVAEKEAKQKELSEKQLS
..::::::::::::::::::::::::::::
NP_001 SWAEWGHRELRLGQLAPFTAPHKDKSFSDQRSELKRRLKAEKKVAEKEAKQKELSEKQLS
20 30 40 50 60 70
50 60 70 80 90 100
pF1KSD QATAAATNHTTDNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QATAAATNHTTDNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFI
80 90 100 110 120 130
110 120 130 140 150 160
pF1KSD QKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEF
140 150 160 170 180 190
170 180 190 200 210 220
pF1KSD IHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQ
200 210 220 230 240 250
230 240 250 260 270 280
pF1KSD RYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNE
260 270 280 290 300 310
290 300 310 320 330 340
pF1KSD LDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHD
320 330 340 350 360 370
350 360 370 380 390 400
pF1KSD LMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLP
380 390 400 410 420 430
410 420 430 440 450 460
pF1KSD ETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIM
440 450 460 470 480 490
470 480 490 500 510 520
pF1KSD SPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFI
500 510 520 530 540 550
530 540 550 560 570 580
pF1KSD DENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLE
560 570 580 590 600 610
590
pF1KSD STTVGSSV
:::::.::
NP_001 STTVGTSV
620
>>XP_016878706 (OMIM: 601421,613641,613916) PREDICTED: l (441 aa)
initn: 2956 init1: 2956 opt: 2956 Z-score: 3296.4 bits: 619.5 E(85289): 7.1e-177
Smith-Waterman score: 2956; 99.8% identity (100.0% similar) in 441 aa overlap (157-597:1-441)
130 140 150 160 170 180
pF1KSD KVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQG
::::::::::::::::::::::::::::::
XP_016 MANSRNYKSEEEFIHINNKLRRGDIIGVQG
10 20 30
190 200 210 220 230 240
pF1KSD NPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFII
40 50 60 70 80 90
250 260 270 280 290 300
pF1KSD RSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKM
100 110 120 130 140 150
310 320 330 340 350 360
pF1KSD LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHIT
160 170 180 190 200 210
370 380 390 400 410 420
pF1KSD GSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDI
220 230 240 250 260 270
430 440 450 460 470 480
pF1KSD CVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGLTERF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGLTERF
280 290 300 310 320 330
490 500 510 520 530 540
pF1KSD ELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAG
340 350 360 370 380 390
550 560 570 580 590
pF1KSD WGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLESTTVGSSV
::::::::::::::::::::::::::::::::::::::::::::::::.::
XP_016 WGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLESTTVGTSV
400 410 420 430 440
>>XP_011508013 (OMIM: 610956,611105) PREDICTED: aspartat (482 aa)
initn: 179 init1: 120 opt: 270 Z-score: 303.1 bits: 65.8 E(85289): 3.8e-10
Smith-Waterman score: 270; 32.4% identity (60.3% similar) in 179 aa overlap (185-358:129-301)
160 170 180 190 200 210
pF1KSD QVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLP
: :: : ::. : ::. : . ::
XP_011 SAASVKKILCEAPVESVVQVSGTVISRPAGQENP-KMPTGEIEIKVKTAELLNAC-KKLP
100 110 120 130 140 150
220 230 240 250 260
pF1KSD HL--HFGLKDKETRYRQRYLDLILNDFVRQ-KFIIRSKIITYIRSFLDEL-GFLEIETP-
.: : . : . :::: : .: : .. .::... .: .: .: ::..::::
XP_011 FEIKNFVKKTEALRLQYRYLD--LRSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPT
160 170 180 190 200 210
270 280 290 300 310 320
pF1KSD MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL
... :::: : :.. : . .:. ....:.:::.:: ....: .:.::
XP_011 LFKRTPGGA--KEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRP
220 230 240 250 260 270
330 340 350 360 370 380
pF1KSD THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTP
..:::: .. :...: .. . : ..
XP_011 DRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVPFPTMTFAEVLATYGTDK
280 290 300 310 320 330
>>XP_006711490 (OMIM: 610956,611105) PREDICTED: aspartat (594 aa)
initn: 258 init1: 120 opt: 270 Z-score: 301.7 bits: 65.9 E(85289): 4.5e-10
Smith-Waterman score: 346; 26.8% identity (53.7% similar) in 441 aa overlap (185-571:129-554)
160 170 180 190 200 210
pF1KSD QVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLP
: :: : ::. : ::. : . ::
XP_006 SAASVKKILCEAPVESVVQVSGTVISRPAGQENP-KMPTGEIEIKVKTAELLNAC-KKLP
100 110 120 130 140 150
220 230 240 250 260
pF1KSD HL--HFGLKDKETRYRQRYLDLILNDFVRQ-KFIIRSKIITYIRSFLDEL-GFLEIETP-
.: : . : . :::: : .: : .. .::... .: .: .: ::..::::
XP_006 FEIKNFVKKTEALRLQYRYLD--LRSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPT
160 170 180 190 200 210
270 280 290 300 310 320
pF1KSD MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL
... :::: : :.. : . .:. ....:.:::.:: ....: .:.::
XP_006 LFKRTPGGA--KEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRP
220 230 240 250 260 270
330 340 350 360 370
pF1KSD THNPEFTTCEFYMAYADYHDLMEITEKMVSG---------MVKHITGSYK---VTYHPDG
..:::: .. :...: .. . : ... .: : .. .:: :
XP_006 DRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVPFPTMTFAEVLATYGTDK
280 290 300 310 320 330
380 390 400 410 420
pF1KSD PE---GQAYDVDFTPPFR--RINMVEE-LEKALG----MKLPETNLF----ETEETRKIL
:. :. .:.. :: .:..... : : : . .:: . . : :..
XP_006 PDTRFGMKI-IDISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRNFA
340 350 360 370 380 390
430 440 450 460 470
pF1KSD DD---IC--VAKA-VECPPPRTT--ARLLDKLVGEFLEVTCINPTFI--CDHPQIMS---
: : ..: .:: : . : : . :: :. . : :. ..:. .
XP_006 ADHFNQCSLLGKLRLECADLLETRGVVLRDPTLFSFLWVVDF-PLFLPKEENPRELESAH
400 410 420 430 440 450
480 490 500 510 520
pF1KSD -PLAKWHRS---------KEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKA
:.. : : :.. .....: . .:: .. .... :: .. :
XP_006 HPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGNEIGGGSIRIHNAELQRYILATLLK---
460 470 480 490 500
530 540 550 560 570 580
pF1KSD AGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKE
.: :. .. ::.:: :: .: ..:.::. ..: : .:..:. ::
XP_006 --EDVKML--SHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRDVIAFPKSFRGHDLM
510 520 530 540 550 560
590
pF1KSD NVATTDTLESTTVGSSV
XP_006 SNTPDSVPPEELKPYHIRVSKPTDSKAERAH
570 580 590
>>NP_060592 (OMIM: 610956,611105) aspartate--tRNA ligase (645 aa)
initn: 258 init1: 120 opt: 270 Z-score: 301.2 bits: 65.9 E(85289): 4.9e-10
Smith-Waterman score: 270; 32.4% identity (60.3% similar) in 179 aa overlap (185-358:129-301)
160 170 180 190 200 210
pF1KSD QVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLP
: :: : ::. : ::. : . ::
NP_060 SAASVKKILCEAPVESVVQVSGTVISRPAGQENP-KMPTGEIEIKVKTAELLNAC-KKLP
100 110 120 130 140 150
220 230 240 250 260
pF1KSD HL--HFGLKDKETRYRQRYLDLILNDFVRQ-KFIIRSKIITYIRSFLDEL-GFLEIETP-
.: : . : . :::: : .: : .. .::... .: .: .: ::..::::
NP_060 FEIKNFVKKTEALRLQYRYLD--LRSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPT
160 170 180 190 200 210
270 280 290 300 310 320
pF1KSD MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL
... :::: : :.. : . .:. ....:.:::.:: ....: .:.::
NP_060 LFKRTPGGA--KEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRP
220 230 240 250 260 270
330 340 350 360 370 380
pF1KSD THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTP
..:::: .. :...: .. . : ..
NP_060 DRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVPFPTMTFAEVLATYGTDK
280 290 300 310 320 330
>>NP_001280241 (OMIM: 603084,615281) aspartate--tRNA lig (401 aa)
initn: 232 init1: 114 opt: 153 Z-score: 174.0 bits: 41.6 E(85289): 0.006
Smith-Waterman score: 293; 24.6% identity (56.9% similar) in 357 aa overlap (222-571:75-393)
200 210 220 230 240 250
pF1KSD KKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKII
...:: .: .:: .. . : ..: :
NP_001 ISLAEPRLPLQLDDAVRPEAEGEEEGRATVNQDTRLDNRVIDL-RTSTSQAVFRLQSGIC
50 60 70 80 90 100
260 270 280 290 300 310
pF1KSD TYIRSFLDELGFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVG
.: : . ::.::.:: ... :.. ..: .. : :. .:.::..: . .
NP_001 HLFRETLINKGFVEIQTPKIISAASEGGANVFTVSYFKN---NAYLAQSPQLYKQMCICA
110 120 130 140 150 160
320 330 340 350 360
pF1KSD GIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSY
...:. :: :: : . : ::. .. ::. .:: :. :.... ::. . :
NP_001 DFEKVFSIGPVFRAEDSNTHRHLTEFVGLDIEMAF-NYH-YHEVMEEIADTMVQIFKG-L
170 180 190 200 210
370 380 390 400 410 420
pF1KSD KVTYHPDGPEGQAYDVDFT-PPFRRINMVEELE--KALGMKLPETNLFETEETRKILDDI
. .. : :. . .: ::. .. . .:: .::.: : :... .: ::.
NP_001 QERFQT---EIQTVNKQFPCEPFKFLEPTLRLEYCEALAM-LREAGVEMGDE-----DDL
220 230 240 250 260
430 440 450 460 470 480
pF1KSD CVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICD-HPQIMSPLAKWHRSKEG-LTE
. . .::.:.... . .: : .: . :. .. ..
NP_001 STPN--------------EKLLGHLVKEKYDTDFYILDKYPLAVRPFYTMPDPRNPKQSN
270 280 290 300 310
490 500 510 520 530 540
pF1KSD RFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPT
...:. .:: .. ...:: ::. :.: .. : : . . . ....: ::
NP_001 SYDMFMRGEEILSGAQRIHDP----QLLTERALHHGI-DLEKI---KAYIDSFRFGAPPH
320 330 340 350 360
550 560 570 580 590
pF1KSD AGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLESTTVGSSV
:: :.:..::.:.. .:.... .::
NP_001 AGGGIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP
370 380 390 400
>>XP_016858978 (OMIM: 603084,615281) PREDICTED: aspartat (468 aa)
initn: 232 init1: 114 opt: 153 Z-score: 173.0 bits: 41.7 E(85289): 0.0068
Smith-Waterman score: 328; 23.3% identity (55.1% similar) in 477 aa overlap (123-571:24-460)
100 110 120 130 140 150
pF1KSD DPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV
: .. : .:.:..::.: : : :: .
XP_016 MIQSQEKPDRVLVRVRDLTIQKADEVVWVRARVHTSRAKG-KQCFLVLRQQQF
10 20 30 40 50
160 170 180 190 200 210
pF1KSD KLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHM
..:... .. :.. .... .. . .:. :.: :... : .. : ...
XP_016 NVQALVAVGDHASKQ-MVKFAANINKESIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYV
60 70 80 90 100 110
220 230 240 250
pF1KSD L----PHLHFGLKD-----------------KETRYRQRYLDLILNDFVRQKFIIRSKII
. :.: . : : ..:: .: .:: .. . : ..: :
XP_016 ISLAEPRLPLQLDDAVRPEAEGEEEGRATVNQDTRLDNRVIDL-RTSTSQAVFRLQSGIC
120 130 140 150 160 170
260 270 280 290 300 310
pF1KSD TYIRSFLDELGFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVG
.: : . ::.::.:: ... :.. ..: .. : :. .:.::..: . .
XP_016 HLFRETLINKGFVEIQTPKIISAASEGGANVFTVSYFKN---NAYLAQSPQLYKQMCICA
180 190 200 210 220
320 330 340 350 360
pF1KSD GIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSY
...:. :: :: : . : ::. .. ::. .:: :. :.... ::. . :
XP_016 DFEKVFSIGPVFRAEDSNTHRHLTEFVGLDIEMAF-NYH-YHEVMEEIADTMVQIFKG-L
230 240 250 260 270 280
370 380 390 400 410 420
pF1KSD KVTYHPDGPEGQAYDVDFT-PPFRRINMVEELE--KALGMKLPETNLFETEETRKILDDI
. .. : :. . .: ::. .. . .:: .::.: : :... .: ::.
XP_016 QERFQ---TEIQTVNKQFPCEPFKFLEPTLRLEYCEALAM-LREAGVEMGDE-----DDL
290 300 310 320 330
430 440 450 460 470 480
pF1KSD CVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICD-HPQIMSPLAKWHRSKEG-LTE
. . .::.:.... . .: : .: . :. .. ..
XP_016 STPN--------------EKLLGHLVKEKYDTDFYILDKYPLAVRPFYTMPDPRNPKQSN
340 350 360 370 380
490 500 510 520 530 540
pF1KSD RFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPT
...:. .:: .. ...:: ::. :.: .. : : . . . ....: ::
XP_016 SYDMFMRGEEILSGAQRIHDP----QLLTERALHHGI-DLEKI---KAYIDSFRFGAPPH
390 400 410 420 430
550 560 570 580 590
pF1KSD AGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLESTTVGSSV
:: :.:..::.:.. .:.... .::
XP_016 AGGGIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP
440 450 460
>>NP_001340 (OMIM: 603084,615281) aspartate--tRNA ligase (501 aa)
initn: 232 init1: 114 opt: 153 Z-score: 172.5 bits: 41.7 E(85289): 0.0072
Smith-Waterman score: 328; 23.3% identity (55.1% similar) in 477 aa overlap (123-571:57-493)
100 110 120 130 140 150
pF1KSD DPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV
: .. : .:.:..::.: : : :: .
NP_001 ERYGISSMIQSQEKPDRVLVRVRDLTIQKADEVVWVRARVHTSRAKG-KQCFLVLRQQQF
30 40 50 60 70 80
160 170 180 190 200 210
pF1KSD KLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHM
..:... .. :.. .... .. . .:. :.: :... : .. : ...
NP_001 NVQALVAVGDHASKQ-MVKFAANINKESIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYV
90 100 110 120 130 140
220 230 240 250
pF1KSD L----PHLHFGLKD-----------------KETRYRQRYLDLILNDFVRQKFIIRSKII
. :.: . : : ..:: .: .:: .. . : ..: :
NP_001 ISLAEPRLPLQLDDAVRPEAEGEEEGRATVNQDTRLDNRVIDL-RTSTSQAVFRLQSGIC
150 160 170 180 190 200
260 270 280 290 300 310
pF1KSD TYIRSFLDELGFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVG
.: : . ::.::.:: ... :.. ..: .. : :. .:.::..: . .
NP_001 HLFRETLINKGFVEIQTPKIISAASEGGANVFTVSYFKN---NAYLAQSPQLYKQMCICA
210 220 230 240 250 260
320 330 340 350 360
pF1KSD GIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSY
...:. :: :: : . : ::. .. ::. .:: :. :.... ::. . :
NP_001 DFEKVFSIGPVFRAEDSNTHRHLTEFVGLDIEMAF-NYH-YHEVMEEIADTMVQIFKG-L
270 280 290 300 310
370 380 390 400 410 420
pF1KSD KVTYHPDGPEGQAYDVDFT-PPFRRINMVEELE--KALGMKLPETNLFETEETRKILDDI
. .. : :. . .: ::. .. . .:: .::.: : :... .: ::.
NP_001 QERFQ---TEIQTVNKQFPCEPFKFLEPTLRLEYCEALAM-LREAGVEMGDE-----DDL
320 330 340 350 360
430 440 450 460 470 480
pF1KSD CVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICD-HPQIMSPLAKWHRSKEG-LTE
. . .::.:.... . .: : .: . :. .. ..
NP_001 STPN--------------EKLLGHLVKEKYDTDFYILDKYPLAVRPFYTMPDPRNPKQSN
370 380 390 400 410
490 500 510 520 530 540
pF1KSD RFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPT
...:. .:: .. ...:: ::. :.: .. : : . . . ....: ::
NP_001 SYDMFMRGEEILSGAQRIHDP----QLLTERALHHGI-DLEKI---KAYIDSFRFGAPPH
420 430 440 450 460
550 560 570 580 590
pF1KSD AGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKENVATTDTLESTTVGSSV
:: :.:..::.:.. .:.... .::
NP_001 AGGGIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP
470 480 490 500
597 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 23:48:11 2016 done: Wed Nov 2 23:48:12 2016
Total Scan time: 8.720 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]