FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0074, 741 aa
  1>>>pF1KSDA0074 741 - 741 aa - 741 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5612+/-0.000868; mu= 15.0093+/- 0.052
 mean_var=102.5331+/-20.570, 0's: 0 Z-trim(109.3): 9  B-trim: 116 in 1/51
 Lambda= 0.126661
 statistics sampled from 10786 (10790) to 10786 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.331), width:  16
 Scan time:  3.800

The best scores are:                                      opt bits E(32554)
CCDS2021.1 NCAPH gene_id:23397|Hs108|chr2          ( 741) 4986 921.9       0
CCDS62960.1 NCAPH gene_id:23397|Hs108|chr2         ( 605) 4077 755.8 4.5e-218


>>CCDS2021.1 NCAPH gene_id:23397|Hs108|chr2               (741 aa)
 initn: 4986 init1: 4986 opt: 4986  Z-score: 4925.0  bits: 921.9 E(32554):    0
Smith-Waterman score: 4986; 100.0% identity (100.0% similar) in 741 aa overlap (1-741:1-741)

               10        20        30        40        50        60
pF1KSD MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
              670       680       690       700       710       720

              730       740 
pF1KSD EKNLKLEGTEDLSDVLVRQGD
       :::::::::::::::::::::
CCDS20 EKNLKLEGTEDLSDVLVRQGD
              730       740 

>>CCDS62960.1 NCAPH gene_id:23397|Hs108|chr2              (605 aa)
 initn: 4077 init1: 4077 opt: 4077  Z-score: 4028.6  bits: 755.8 E(32554): 4.5e-218
Smith-Waterman score: 4077; 100.0% identity (100.0% similar) in 605 aa overlap (137-741:1-605)

        110       120       130       140       150       160      
pF1KSD ITEHYSTCIKLSTENKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYA
                                     ::::::::::::::::::::::::::::::
CCDS62                               MSEILKQKDTEPTNFKVAAGTLDASTKIYA
                                             10        20        30

        170       180       190       200       210       220      
pF1KSD VRVDAVHADVYRVLGGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 VRVDAVHADVYRVLGGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQN
               40        50        60        70        80        90

        230       240       250       260       270       280      
pF1KSD INNLNVSEADRKCEIDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 INNLNVSEADRKCEIDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTG
              100       110       120       130       140       150

        290       300       310       320       330       340      
pF1KSD EPLELPELGCVEMTDLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 EPLELPELGCVEMTDLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKN
              160       170       180       190       200       210

        350       360       370       380       390       400      
pF1KSD DQVFDINAEVDESDCGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 DQVFDINAEVDESDCGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEM
              220       230       240       250       260       270

        410       420       430       440       450       460      
pF1KSD ISLGDGDIRTMCPLLSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 ISLGDGDIRTMCPLLSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKST
              280       290       300       310       320       330

        470       480       490       500       510       520      
pF1KSD KKDFEIDFEDDIDFDVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 KKDFEIDFEDDIDFDVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKP
              340       350       360       370       380       390

        530       540       550       560       570       580      
pF1KSD GTRLLKMAQGHRVETEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 GTRLLKMAQGHRVETEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNS
              400       410       420       430       440       450

        590       600       610       620       630       640      
pF1KSD DLSPYPCHPPKTAQQNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 DLSPYPCHPPKTAQQNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKK
              460       470       480       490       500       510

        650       660       670       680       690       700      
pF1KSD LKQSMWSLLTALSGKEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LKQSMWSLLTALSGKEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNL
              520       530       540       550       560       570

        710       720       730       740 
pF1KSD SIPLAFACLLHLANEKNLKLEGTEDLSDVLVRQGD
       :::::::::::::::::::::::::::::::::::
CCDS62 SIPLAFACLLHLANEKNLKLEGTEDLSDVLVRQGD
              580       590       600     




741 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:48:51 2016 done: Wed Nov  2 23:48:52 2016
 Total Scan time:  3.800 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]