Result of FASTA (omim) for
pF1KSDA0074
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0074, 741 aa
1>>>pF1KSDA0074 741 - 741 aa - 741 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9609+/-0.000365; mu= 12.7956+/- 0.023
mean_var=112.5901+/-23.018, 0's: 0 Z-trim(116.7): 16 B-trim: 651 in 1/53
Lambda= 0.120872
statistics sampled from 28120 (28128) to 28120 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.33), width: 16
Scan time: 9.450
The best scores are: opt bits E(85289)
NP_056156 (OMIM: 602332) condensin complex subunit ( 741) 4986 880.7 0
NP_001268639 (OMIM: 602332) condensin complex subu ( 730) 4870 860.5 0
XP_005263965 (OMIM: 602332) PREDICTED: condensin c ( 725) 4867 860.0 0
NP_001268640 (OMIM: 602332) condensin complex subu ( 717) 4776 844.1 0
NP_001268641 (OMIM: 602332) condensin complex subu ( 605) 4077 722.2 1.6e-207
XP_006712451 (OMIM: 602332) PREDICTED: condensin c ( 710) 3876 687.1 6.4e-197
>>NP_056156 (OMIM: 602332) condensin complex subunit 2 i (741 aa)
initn: 4986 init1: 4986 opt: 4986 Z-score: 4702.2 bits: 880.7 E(85289): 0
Smith-Waterman score: 4986; 100.0% identity (100.0% similar) in 741 aa overlap (1-741:1-741)
10 20 30 40 50 60
pF1KSD MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
670 680 690 700 710 720
730 740
pF1KSD EKNLKLEGTEDLSDVLVRQGD
:::::::::::::::::::::
NP_056 EKNLKLEGTEDLSDVLVRQGD
730 740
>>NP_001268639 (OMIM: 602332) condensin complex subunit (730 aa)
initn: 4870 init1: 4870 opt: 4870 Z-score: 4593.0 bits: 860.5 E(85289): 0
Smith-Waterman score: 4888; 98.5% identity (98.5% similar) in 741 aa overlap (1-741:1-730)
10 20 30 40 50 60
pF1KSD MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
:::::: :::::::::::::::::::::::::::::::::::::::::::
NP_001 MGPPGP-----------ETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
10 20 30 40
70 80 90 100 110 120
pF1KSD EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KSD NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
110 120 130 140 150 160
190 200 210 220 230 240
pF1KSD GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
170 180 190 200 210 220
250 260 270 280 290 300
pF1KSD IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
230 240 250 260 270 280
310 320 330 340 350 360
pF1KSD DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
290 300 310 320 330 340
370 380 390 400 410 420
pF1KSD CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
350 360 370 380 390 400
430 440 450 460 470 480
pF1KSD LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
410 420 430 440 450 460
490 500 510 520 530 540
pF1KSD DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
470 480 490 500 510 520
550 560 570 580 590 600
pF1KSD TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
530 540 550 560 570 580
610 620 630 640 650 660
pF1KSD QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
590 600 610 620 630 640
670 680 690 700 710 720
pF1KSD KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
650 660 670 680 690 700
730 740
pF1KSD EKNLKLEGTEDLSDVLVRQGD
:::::::::::::::::::::
NP_001 EKNLKLEGTEDLSDVLVRQGD
710 720 730
>>XP_005263965 (OMIM: 602332) PREDICTED: condensin compl (725 aa)
initn: 4867 init1: 4867 opt: 4867 Z-score: 4590.2 bits: 860.0 E(85289): 0
Smith-Waterman score: 4867; 100.0% identity (100.0% similar) in 722 aa overlap (1-722:1-722)
10 20 30 40 50 60
pF1KSD MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
670 680 690 700 710 720
730 740
pF1KSD EKNLKLEGTEDLSDVLVRQGD
::
XP_005 EKVGN
>>NP_001268640 (OMIM: 602332) condensin complex subunit (717 aa)
initn: 4815 init1: 4776 opt: 4776 Z-score: 4504.5 bits: 844.1 E(85289): 0
Smith-Waterman score: 4776; 100.0% identity (100.0% similar) in 711 aa overlap (31-741:7-717)
10 20 30 40 50 60
pF1KSD MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
::::::::::::::::::::::::::::::
NP_001 MGPPGPERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
10 20 30
70 80 90 100 110 120
pF1KSD EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KSD NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KSD GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
160 170 180 190 200 210
250 260 270 280 290 300
pF1KSD IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
220 230 240 250 260 270
310 320 330 340 350 360
pF1KSD DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
280 290 300 310 320 330
370 380 390 400 410 420
pF1KSD CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
340 350 360 370 380 390
430 440 450 460 470 480
pF1KSD LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
400 410 420 430 440 450
490 500 510 520 530 540
pF1KSD DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
460 470 480 490 500 510
550 560 570 580 590 600
pF1KSD TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
520 530 540 550 560 570
610 620 630 640 650 660
pF1KSD QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
580 590 600 610 620 630
670 680 690 700 710 720
pF1KSD KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
640 650 660 670 680 690
730 740
pF1KSD EKNLKLEGTEDLSDVLVRQGD
:::::::::::::::::::::
NP_001 EKNLKLEGTEDLSDVLVRQGD
700 710
>>NP_001268641 (OMIM: 602332) condensin complex subunit (605 aa)
initn: 4077 init1: 4077 opt: 4077 Z-score: 3846.9 bits: 722.2 E(85289): 1.6e-207
Smith-Waterman score: 4077; 100.0% identity (100.0% similar) in 605 aa overlap (137-741:1-605)
110 120 130 140 150 160
pF1KSD ITEHYSTCIKLSTENKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYA
::::::::::::::::::::::::::::::
NP_001 MSEILKQKDTEPTNFKVAAGTLDASTKIYA
10 20 30
170 180 190 200 210 220
pF1KSD VRVDAVHADVYRVLGGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRVDAVHADVYRVLGGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQN
40 50 60 70 80 90
230 240 250 260 270 280
pF1KSD INNLNVSEADRKCEIDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INNLNVSEADRKCEIDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTG
100 110 120 130 140 150
290 300 310 320 330 340
pF1KSD EPLELPELGCVEMTDLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPLELPELGCVEMTDLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKN
160 170 180 190 200 210
350 360 370 380 390 400
pF1KSD DQVFDINAEVDESDCGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DQVFDINAEVDESDCGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEM
220 230 240 250 260 270
410 420 430 440 450 460
pF1KSD ISLGDGDIRTMCPLLSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISLGDGDIRTMCPLLSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKST
280 290 300 310 320 330
470 480 490 500 510 520
pF1KSD KKDFEIDFEDDIDFDVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKDFEIDFEDDIDFDVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKP
340 350 360 370 380 390
530 540 550 560 570 580
pF1KSD GTRLLKMAQGHRVETEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTRLLKMAQGHRVETEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNS
400 410 420 430 440 450
590 600 610 620 630 640
pF1KSD DLSPYPCHPPKTAQQNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLSPYPCHPPKTAQQNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKK
460 470 480 490 500 510
650 660 670 680 690 700
pF1KSD LKQSMWSLLTALSGKEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKQSMWSLLTALSGKEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNL
520 530 540 550 560 570
710 720 730 740
pF1KSD SIPLAFACLLHLANEKNLKLEGTEDLSDVLVRQGD
:::::::::::::::::::::::::::::::::::
NP_001 SIPLAFACLLHLANEKNLKLEGTEDLSDVLVRQGD
580 590 600
>>XP_006712451 (OMIM: 602332) PREDICTED: condensin compl (710 aa)
initn: 3853 init1: 3853 opt: 3876 Z-score: 3656.4 bits: 687.1 E(85289): 6.4e-197
Smith-Waterman score: 4684; 95.8% identity (95.8% similar) in 741 aa overlap (1-741:1-710)
10 20 30 40 50 60
pF1KSD MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MGPPGPALPATMNNSSSETRGHPHSASSPSERVFPMPLPRKAPLNIPGTPVLEDFPQNDD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EKERLQRRRSRVFDLQFSTDSPRLLASPSSRSIDISATIPKFTNTQITEHYSTCIKLSTE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NKITTKNAFGLHLIDFMSEILKQKDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IDPMFQKTAASFDECSTAGVFLSTLHCQDYRSELLFPSDVQTLSTGEPLELPELGCVEMT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DLKAPLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALVDKFKKNDQVFDINAEVDESD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 CGDFPDGSLGDDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDFEDDIDF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DVYFRKTKAATILTKSTLENQNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD TEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQ
:::::::::::::::::::::::::: :::
XP_006 TEHYEEIEDYDYNNPNDTSNFCPGLQ-------------------------------TAQ
550 560
610 620 630 640 650 660
pF1KSD QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSG
570 580 590 600 610 620
670 680 690 700 710 720
pF1KSD KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLAN
630 640 650 660 670 680
730 740
pF1KSD EKNLKLEGTEDLSDVLVRQGD
:::::::::::::::::::::
XP_006 EKNLKLEGTEDLSDVLVRQGD
690 700 710
741 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 23:48:52 2016 done: Wed Nov 2 23:48:54 2016
Total Scan time: 9.450 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]