FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0081, 234 aa
  1>>>pF1KSDA0081 234 - 234 aa - 234 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4605+/-0.000573; mu= 10.7310+/- 0.035
 mean_var=102.4045+/-20.054, 0's: 0 Z-trim(116.2): 3  B-trim: 11 in 1/51
 Lambda= 0.126740
 statistics sampled from 16751 (16753) to 16751 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.515), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(32554)
CCDS32308.1 MESDC2 gene_id:23184|Hs108|chr15       ( 234) 1570 296.2 1.2e-80


>>CCDS32308.1 MESDC2 gene_id:23184|Hs108|chr15            (234 aa)
 initn: 1570 init1: 1570 opt: 1570  Z-score: 1561.2  bits: 296.2 E(32554): 1.2e-80
Smith-Waterman score: 1570; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234)

               10        20        30        40        50        60
pF1KSD MAASRWARKAVVLLCASDLLLLLLLLPPPGSCAAEGSPGTPDESTPPPRKKKKDIRDYND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAASRWARKAVVLLCASDLLLLLLLLPPPGSCAAEGSPGTPDESTPPPRKKKKDIRDYND
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ADMARLLEQWEKDDDIEEGDLPEHKRPSAPVDFSKIDPSKPESILKMTKKGKTLMMFVTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ADMARLLEQWEKDDDIEEGDLPEHKRPSAPVDFSKIDPSKPESILKMTKKGKTLMMFVTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD SGSPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVGQDRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SGSPTEKETEEITSLWQGSLFNANYDVQRFIVGSDRAIFMLRDGSYAWEIKDFLVGQDRC
              130       140       150       160       170       180

              190       200       210       220       230    
pF1KSD ADVTLEGQVYPGKGGGSKEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKREDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ADVTLEGQVYPGKGGGSKEKNKTKQDKGKKKKEGDLKSRSSKEENRAGNKREDL
              190       200       210       220       230    




234 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:50:50 2016 done: Wed Nov  2 23:50:51 2016
 Total Scan time:  2.670 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]