FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0084, 578 aa
  1>>>pF1KSDA0084 578 - 578 aa - 578 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7096+/-0.000915; mu= 9.2865+/- 0.055
 mean_var=153.9444+/-30.110, 0's: 0 Z-trim(110.9): 11  B-trim: 0 in 0/53
 Lambda= 0.103369
 statistics sampled from 11949 (11955) to 11949 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.367), width:  16
 Scan time:  3.150

The best scores are:                                      opt bits E(32554)
CCDS33712.1 RFTN1 gene_id:23180|Hs108|chr3         ( 578) 3857 587.1  2e-167
CCDS2323.1 RFTN2 gene_id:130132|Hs108|chr2         ( 501)  456 79.9 8.4e-15


>>CCDS33712.1 RFTN1 gene_id:23180|Hs108|chr3              (578 aa)
 initn: 3857 init1: 3857 opt: 3857  Z-score: 3119.4  bits: 587.1 E(32554): 2e-167
Smith-Waterman score: 3857; 100.0% identity (100.0% similar) in 578 aa overlap (1-578:1-578)

               10        20        30        40        50        60
pF1KSD MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLRDLPAQLLELYQQGFSLAALHPFVQPTHEREKTPLEHIFRAILIKKTDRSQKTDLHNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SLRDLPAQLLELYQQGFSLAALHPFVQPTHEREKTPLEHIFRAILIKKTDRSQKTDLHNE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD GYILELDCCSSLDHPTDQKLIPEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSSAPVST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GYILELDCCSSLDHPTDQKLIPEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSSAPVST
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD ANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SGEGDGGELSPQGVSKTLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPVTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SGEGDGGELSPQGVSKTLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPVTI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD PLHVSKNGQTVSGLDANWLEHMSDHFRKGGMLVNAVFYLGIVNDSLHGLTDGVFIFEAVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PLHVSKNGQTVSGLDANWLEHMSDHFRKGGMLVNAVFYLGIVNDSLHGLTDGVFIFEAVS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD TEDSKTIQGYDAIVVEQWTVLEGVEVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTTSEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TEDSKTIQGYDAIVVEQWTVLEGVEVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTTSEGS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD VSTKQIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VSTKQIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD LEDQSSKAGDMGNCVSGQQQEGGVSEEMKGPVQEDKGEQLSPGGLLCGVGVEGEAVQNGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LEDQSSKAGDMGNCVSGQQQEGGVSEEMKGPVQEDKGEQLSPGGLLCGVGVEGEAVQNGP
              490       500       510       520       530       540

              550       560       570        
pF1KSD ASHSRALVGICTGHSNPGEDARDGDAEEVRELGTVEEN
       ::::::::::::::::::::::::::::::::::::::
CCDS33 ASHSRALVGICTGHSNPGEDARDGDAEEVRELGTVEEN
              550       560       570        

>>CCDS2323.1 RFTN2 gene_id:130132|Hs108|chr2              (501 aa)
 initn: 697 init1: 306 opt: 456  Z-score: 379.2  bits: 79.9 E(32554): 8.4e-15
Smith-Waterman score: 807; 33.2% identity (60.8% similar) in 479 aa overlap (1-475:1-442)

               10        20        30        40        50        60
pF1KSD MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLA
       ::::: :::  :.. ::.:.::::::::::: . .::: .:.:: :.:.  :   .... 
CCDS23 MGCGLRKLEDPDDSSPGKIFSTLKRPQVETKTEFAYEYVLLDFT-LQASSNP--EVIKIN
               10        20        30        40         50         

               70        80        90       100         110        
pF1KSD SLRDLPAQLLELYQQGFSLAALHPFVQPTHEREKTPLEHIFRAILI--KKTDRSQKTDLH
       :. :. ... . : .:. ..:.:: .::. .:.. :  ...:..:.  : . ... .   
CCDS23 SILDIVTKVENYYLKGYIVGAIHPVIQPVGQRKHLPASYLYRVVLLRLKLSPKNSAAPSG
        60        70        80        90       100       110       

      120       130       140       150       160       170        
pF1KSD NEGYILELDCCSSLDHPTDQKLIPEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSSAPV
       ..   : .. :   ..   .    :.:.::. ::..:.:::: : :..:         : 
CCDS23 QRRPRLVIEECPLTSEAQTNDAAKELIEKINVAAKRGMKFVGFISQHYS---------PS
       120       130       140       150       160                 

      180       190       200       210       220       230        
pF1KSD STANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVPLAKQPS
       .  :.:       :  ::  :. . . :. . :     :. .    ::  .:  . ..  
CCDS23 KFCNGT-------NHDGDIESMLHVRHGSDENC-----RSWNEGTLSGQSSESGIEEELH
      170              180       190            200       210      

      240       250       260       270       280       290        
pF1KSD SPSGEGDGGELSPQGVSKTLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPV
         ::. .  . .    ::.  :  :.             ...:.::   . .    :   
CCDS23 HESGQYQMEQNGSPTSSKSRKGEASDN------------KLYTVFNAFDDDSTSWAYQEG
        220       230       240                   250       260    

      300       310       320       330        340       350       
pF1KSD TIPLHVSKNGQTVSGLDANWLEHMSDHFRKGGMLVNA-VFYLGIVNDSLHGLTDGVFIFE
        . ..:...:...: :::.:::  . ....:  :... ::.    .. :    .: ::.:
CCDS23 ILSMKVTRKGSVISTLDADWLELTTFYYKQGLSLIDSFVFWETSKGEHLPKSLEGFFIYE
          270       280       290       300       310       320    

        360       370       380       390       400       410      
pF1KSD AV-STEDSKTIQGYDAIVVEQWTVLEGVEVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTT
          :   ... .: ::::::::::.:: :..::: :::..:: .:: :: ::::::..  
CCDS23 EEGSGVPGSSRKGNDAIVVEQWTVIEGCEIKTDYGPLLHTLAEFGWLLTSVLPTPVLRHD
          330       340       350       360       370       380    

        420       430       440       450       460       470      
pF1KSD SEGSVSTKQIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEE
       :::...:::::::::: . ..  .  .:   :  . : .:.   .: : :.. ..: :: 
CCDS23 SEGNLATKQIVFLQRPVMWNSAAQTPDKKASRHIKGEDKNKATSRSIG-LDTTSSQPAES
          390       400       410       420       430        440   

        480       490       500       510       520       530      
pF1KSD NEKNLEDQSSKAGDMGNCVSGQQQEGGVSEEMKGPVQEDKGEQLSPGGLLCGVGVEGEAV
                                                                   
CCDS23 RHLPEECRLSPSRECWTKEGRLAQHNSFSGFSSSDNVLRELDDGQFDQEDGVTQVTCM  
           450       460       470       480       490       500   




578 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:52:13 2016 done: Wed Nov  2 23:52:13 2016
 Total Scan time:  3.150 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]