FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0085, 262 aa
  1>>>pF1KSDA0085 262 - 262 aa - 262 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2260+/-0.000699; mu= 16.1993+/- 0.043
 mean_var=69.0847+/-14.057, 0's: 0 Z-trim(110.1): 11  B-trim: 617 in 1/50
 Lambda= 0.154306
 statistics sampled from 11363 (11371) to 11363 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.349), width:  16
 Scan time:  2.250

The best scores are:                                      opt bits E(32554)
CCDS337.1 LAPTM5 gene_id:7805|Hs108|chr1           ( 262) 1713 389.7 1.1e-108


>>CCDS337.1 LAPTM5 gene_id:7805|Hs108|chr1                (262 aa)
 initn: 1713 init1: 1713 opt: 1713  Z-score: 2064.6  bits: 389.7 E(32554): 1.1e-108
Smith-Waterman score: 1713; 100.0% identity (100.0% similar) in 262 aa overlap (1-262:1-262)

               10        20        30        40        50        60
pF1KSD MDPRLSTVRQTCCCFNVRIATTALAIYHVIMSVLLFIEHSVEVAHGKASCKLSQMGYLRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MDPRLSTVRQTCCCFNVRIATTALAIYHVIMSVLLFIEHSVEVAHGKASCKLSQMGYLRI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ADLISSFLLITMLFIISLSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLLGSYIELPAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ADLISSFLLITMLFIISLSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLLGSYIELPAY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LKLASRSRASSSKFPLMTLQLLDFCLSILTLCSSYMEVPTYLNFKSMNHMNYLPSQEDMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LKLASRSRASSSKFPLMTLQLLDFCLSILTLCSSYMEVPTYLNFKSMNHMNYLPSQEDMP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD HNQFIKMMIIFSIAFITVLIFKVYMFKCVWRCYRLIKCMNSVEEKRNSKMLQKVVLPSYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 HNQFIKMMIIFSIAFITVLIFKVYMFKCVWRCYRLIKCMNSVEEKRNSKMLQKVVLPSYE
              190       200       210       220       230       240

              250       260  
pF1KSD EALSLPSKTPEGGPAPPPYSEV
       ::::::::::::::::::::::
CCDS33 EALSLPSKTPEGGPAPPPYSEV
              250       260  




262 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:53:21 2016 done: Wed Nov  2 23:53:21 2016
 Total Scan time:  2.250 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]