Result of FASTA (omim) for
pF1KSDA0098
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0098, 541 aa
1>>>pF1KSDA0098 541 - 541 aa - 541 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3215+/-0.000475; mu= 19.2450+/- 0.029
mean_var=74.3547+/-15.183, 0's: 0 Z-trim(108.6): 42 B-trim: 162 in 2/52
Lambda= 0.148737
statistics sampled from 16663 (16700) to 16663 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.55), E-opt: 0.2 (0.196), width: 16
Scan time: 7.270
The best scores are: opt bits E(85289)
NP_036205 (OMIM: 256840,610150) T-complex protein ( 541) 3482 757.2 2.9e-218
NP_001293082 (OMIM: 256840,610150) T-complex prote ( 520) 3256 708.7 1.1e-203
NP_001293085 (OMIM: 256840,610150) T-complex prote ( 503) 3236 704.4 2.1e-202
NP_001293084 (OMIM: 256840,610150) T-complex prote ( 448) 2785 607.6 2.6e-173
NP_001293083 (OMIM: 256840,610150) T-complex prote ( 486) 2785 607.6 2.8e-173
NP_006421 (OMIM: 605142) T-complex protein 1 subun ( 539) 1177 262.6 2.2e-69
NP_005989 (OMIM: 600114) T-complex protein 1 subun ( 545) 1046 234.5 6.5e-61
NP_001243650 (OMIM: 605142) T-complex protein 1 su ( 509) 957 215.4 3.5e-55
NP_006422 (OMIM: 605139) T-complex protein 1 subun ( 535) 938 211.3 6.1e-54
NP_006420 (OMIM: 605140) T-complex protein 1 subun ( 543) 895 202.1 3.7e-51
NP_001008800 (OMIM: 600114) T-complex protein 1 su ( 507) 892 201.4 5.5e-51
NP_001185771 (OMIM: 605139) T-complex protein 1 su ( 488) 884 199.7 1.7e-50
NP_001753 (OMIM: 104613) T-complex protein 1 subun ( 531) 858 194.1 8.9e-49
NP_006575 (OMIM: 610730) T-complex protein 1 subun ( 530) 852 192.8 2.2e-48
NP_110379 (OMIM: 186980) T-complex protein 1 subun ( 556) 842 190.7 1e-47
XP_011530780 (OMIM: 605140) PREDICTED: T-complex p ( 499) 806 183.0 1.9e-45
NP_001159757 (OMIM: 605140) T-complex protein 1 su ( 499) 806 183.0 1.9e-45
XP_011530781 (OMIM: 605140) PREDICTED: T-complex p ( 499) 806 183.0 1.9e-45
XP_016879512 (OMIM: 610730) PREDICTED: T-complex p ( 464) 721 164.7 5.7e-40
NP_001159756 (OMIM: 605140) T-complex protein 1 su ( 456) 638 146.9 1.3e-34
NP_001180459 (OMIM: 610730) T-complex protein 1 su ( 485) 617 142.4 3.1e-33
NP_001009186 (OMIM: 104613) T-complex protein 1 su ( 486) 612 141.3 6.4e-33
XP_011522505 (OMIM: 610730) PREDICTED: T-complex p ( 388) 553 128.6 3.5e-29
NP_001008897 (OMIM: 186980) T-complex protein 1 su ( 401) 496 116.4 1.7e-25
NP_001009570 (OMIM: 605140) T-complex protein 1 su ( 339) 465 109.7 1.5e-23
XP_016879513 (OMIM: 610730) PREDICTED: T-complex p ( 351) 403 96.4 1.6e-19
NP_001180458 (OMIM: 610730) T-complex protein 1 su ( 493) 362 87.7 9.2e-17
NP_002147 (OMIM: 118190,605280,612233) 60 kDa heat ( 573) 212 55.5 5.1e-07
NP_955472 (OMIM: 118190,605280,612233) 60 kDa heat ( 573) 212 55.5 5.1e-07
>>NP_036205 (OMIM: 256840,610150) T-complex protein 1 su (541 aa)
initn: 3482 init1: 3482 opt: 3482 Z-score: 4039.6 bits: 757.2 E(85289): 2.9e-218
Smith-Waterman score: 3482; 100.0% identity (100.0% similar) in 541 aa overlap (1-541:1-541)
10 20 30 40 50 60
pF1KSD MASMGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MASMGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD CHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 CHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD KKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 KKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD GGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 GGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRAR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD QVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 QVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESE
490 500 510 520 530 540
pF1KSD E
:
NP_036 E
>>NP_001293082 (OMIM: 256840,610150) T-complex protein 1 (520 aa)
initn: 3256 init1: 3256 opt: 3256 Z-score: 3777.8 bits: 708.7 E(85289): 1.1e-203
Smith-Waterman score: 3256; 100.0% identity (100.0% similar) in 506 aa overlap (36-541:15-520)
10 20 30 40 50 60
pF1KSD TLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKD
::::::::::::::::::::::::::::::
NP_001 MNSSLGPTIEKLSVSHIMAAKAVANTMRTSLGPNGLDKMMVDKD
10 20 30 40
70 80 90 100 110 120
pF1KSD GDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLD
50 60 70 80 90 100
130 140 150 160 170 180
pF1KSD RGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQM
110 120 130 140 150 160
190 200 210 220 230 240
pF1KSD AEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVED
170 180 190 200 210 220
250 260 270 280 290 300
pF1KSD AKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWG
230 240 250 260 270 280
310 320 330 340 350 360
pF1KSD FDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFG
290 300 310 320 330 340
370 380 390 400 410 420
pF1KSD TTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAA
350 360 370 380 390 400
430 440 450 460 470 480
pF1KSD EISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEM
410 420 430 440 450 460
490 500 510 520 530 540
pF1KSD NPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESEE
470 480 490 500 510 520
>>NP_001293085 (OMIM: 256840,610150) T-complex protein 1 (503 aa)
initn: 3236 init1: 3236 opt: 3236 Z-score: 3754.8 bits: 704.4 E(85289): 2.1e-202
Smith-Waterman score: 3236; 100.0% identity (100.0% similar) in 503 aa overlap (39-541:1-503)
10 20 30 40 50 60
pF1KSD FDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDV
::::::::::::::::::::::::::::::
NP_001 MAAKAVANTMRTSLGPNGLDKMMVDKDGDV
10 20 30
70 80 90 100 110 120
pF1KSD TVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGI
40 50 60 70 80 90
130 140 150 160 170 180
pF1KSD HPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEI
100 110 120 130 140 150
190 200 210 220 230 240
pF1KSD AVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKI
160 170 180 190 200 210
250 260 270 280 290 300
pF1KSD AILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDD
220 230 240 250 260 270
310 320 330 340 350 360
pF1KSD EANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTK
280 290 300 310 320 330
370 380 390 400 410 420
pF1KSD DKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIS
340 350 360 370 380 390
430 440 450 460 470 480
pF1KSD CALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPA
400 410 420 430 440 450
490 500 510 520 530 540
pF1KSD LGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESEE
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESEE
460 470 480 490 500
>>NP_001293084 (OMIM: 256840,610150) T-complex protein 1 (448 aa)
initn: 2782 init1: 2782 opt: 2785 Z-score: 3232.5 bits: 607.6 E(85289): 2.6e-173
Smith-Waterman score: 2785; 99.1% identity (99.3% similar) in 436 aa overlap (106-541:13-448)
80 90 100 110 120 130
pF1KSD TILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIAD
. : :::::::::::::::::::::::::
NP_001 MAAKAVANTMRTSLGPNVLAGALLEEAEQLLDRGIHPIRIAD
10 20 30 40
140 150 160 170 180 190
pF1KSD GYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLT
50 60 70 80 90 100
200 210 220 230 240 250
pF1KSD VADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPF
110 120 130 140 150 160
260 270 280 290 300 310
pF1KSD EPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLL
170 180 190 200 210 220
320 330 340 350 360 370
pF1KSD QNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIE
230 240 250 260 270 280
380 390 400 410 420 430
pF1KSD QCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQ
290 300 310 320 330 340
440 450 460 470 480 490
pF1KSD EADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLH
350 360 370 380 390 400
500 510 520 530 540
pF1KSD KGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESEE
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESEE
410 420 430 440
>>NP_001293083 (OMIM: 256840,610150) T-complex protein 1 (486 aa)
initn: 2782 init1: 2782 opt: 2785 Z-score: 3232.0 bits: 607.6 E(85289): 2.8e-173
Smith-Waterman score: 3012; 89.8% identity (89.8% similar) in 541 aa overlap (1-541:1-486)
10 20 30 40 50 60
pF1KSD MASMGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASMGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPN-----
10 20 30 40 50
70 80 90 100 110 120
pF1KSD MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA
::::::::::
NP_001 --------------------------------------------------VLAGALLEEA
60
130 140 150 160 170 180
pF1KSD EQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNS
70 80 90 100 110 120
190 200 210 220 230 240
pF1KSD CHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP
130 140 150 160 170 180
250 260 270 280 290 300
pF1KSD KKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLA
190 200 210 220 230 240
310 320 330 340 350 360
pF1KSD ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQ
250 260 270 280 290 300
370 380 390 400 410 420
pF1KSD EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY
310 320 330 340 350 360
430 440 450 460 470 480
pF1KSD GGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRAR
370 380 390 400 410 420
490 500 510 520 530 540
pF1KSD QVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESE
430 440 450 460 470 480
pF1KSD E
:
NP_001 E
>>NP_006421 (OMIM: 605142) T-complex protein 1 subunit d (539 aa)
initn: 997 init1: 427 opt: 1177 Z-score: 1366.5 bits: 262.6 E(85289): 2.2e-69
Smith-Waterman score: 1177; 38.6% identity (70.5% similar) in 536 aa overlap (5-533:10-535)
10 20 30 40 50
pF1KSD MASMGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPN
:. : :: .:.:. ... :.: ::::::...::::::.
NP_006 MPENVAPRSGATAGAAGGRGKGAYQDRDKPAQIRF-----SNISAAKAVADAIRTSLGPK
10 20 30 40 50
60 70 80 90 100 110
pF1KSD GLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGA
:.:::. : ::::.::::::::..:.: : :...:::::.:: : :::::.::..::.
NP_006 GMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KSD LLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGS
::. .::..:::: :......: . .:: : .: :...: : :...: :.:.:
NP_006 LLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRP--VELSDRETLLNSATTSLNS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KSD KVVNSCHRQMAEIAVNAVLTVAD-MERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDF
:::.. .. ..::::. : : .::.. ::. :.:: ..: .:..:... .
NP_006 KVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKV
180 190 200 210 220 230
240 250 260 270 280 290
pF1KSD SHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKE
:. . . :: :::... . :: ... :.. .. . . :. . ....:::.
NP_006 SNSGITR-VEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQMDRVLREERAYILNLVKQIKK
240 250 260 270 280 290
300 310 320 330 340
pF1KSD TGANLAICQWG-----FDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELT
:: :. . : . ..: : :.: . .. ... . .::.: . : . : .....:
NP_006 TGCNVLLIQKSILRDALSDLALHFLNKMKIMVIKDIEREDIEFICKTIGTKPVAHIDQFT
300 310 320 330 340 350
350 360 370 380 390 400
pF1KSD AEKLGFAGLVQEISFGTTKDKMLVIEQCKN-SRAVTIFIRGGNKMIIEEAKRSLHDALCV
:. :: : :..:.... . :.: : : . ...::: .::.::..::::.::.::::::
NP_006 ADMLGSAELAEEVNLNGS-GKLLKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCV
360 370 380 390 400 410
410 420 430 440 450 460
pF1KSD IRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGM
:: :.. .. :::: :: :: ... . .:.: .::::::.:::: .:.::.:.
NP_006 IRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGL
420 430 440 450 460 470
470 480 490 500 510 520
pF1KSD NPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMIL
:::.:.::.: :... . : ::. . : ... .. :.. :. . . ..:::. :: ::
NP_006 NPISTVTELRNRHAQGEKTA-GINVRKGGISNILEELVVQPLLVSVSALTLATETVRSIL
480 490 500 510 520 530
530 540
pF1KSD KIDDIRKPGESEE
::::.
NP_006 KIDDVVNTR
>>NP_005989 (OMIM: 600114) T-complex protein 1 subunit g (545 aa)
initn: 541 init1: 541 opt: 1046 Z-score: 1214.6 bits: 234.5 E(85289): 6.5e-61
Smith-Waterman score: 1046; 34.0% identity (68.0% similar) in 535 aa overlap (14-540:5-533)
10 20 30 40 50 60
pF1KSD MASMGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKM
:: :... :. : : : .. ...: :::..:. .:: :::... ::
NP_005 MMGHRPVLVLS-QNTK-RESGRKVQSGNINAAKTIADIIRTCLGPKSMMKM
10 20 30 40
70 80 90 100 110 120
pF1KSD MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA
..: : ...:::: .:: ..:.: :: :.:.:..::.:.:::::.:..::: .: :
NP_005 LLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVA
50 60 70 80 90 100
130 140 150 160 170 180
pF1KSD EQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNS
:..:.. .:: . ..:..: : : ::: . :::.:.. ... .... .:...
NP_005 EHFLEQQMHPTVVISAYRKALDDMISTLKKIS--IPVDISDSDMMLNIINSSITTKAISR
110 120 130 140 150 160
190 200 210 220 230
pF1KSD CHRQMAEIAVNAVLTVADME--RRDVDFE-LIKVEGKVGGRLEDTKLIKGVIVDKDFSHP
.::..:: : : :...:.. .:: :: .::. ...::...:: .::
NP_005 WSSLACNIALDAVKMVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHP
170 180 190 200 210 220
240 250 260 270 280 290
pF1KSD QMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGA
.: . ... .:..: .: : ... ...: ::. . ..:.: .... ..: .
NP_005 RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKP
230 240 250 260 270 280
300 310 320 330 340 350
pF1KSD NLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGF-A
...: . :..: :.: :.. :. :.: : . . :: : :.::: : :: . .: :
NP_005 DVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGA
290 300 310 320 330 340
360 370 380 390 400 410
pF1KSD GLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDN
::.. ..: . . : .::. .: ::..::..: :. :..:.:.::. : ::.. :
NP_005 GLLEIKKIGD--EYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDP
350 360 370 380 390 400
420 430 440 450 460 470
pF1KSD RVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTE
..: ::::.:.. : :..... .::. .:: :.:::::: .: .: : . :. .:
NP_005 QLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTS
410 420 430 440 450 460
480 490 500 510 520 530
pF1KSD VRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDI---
.::....: . :.. :::. . : : : : . :.. . ..:.::::
NP_005 LRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSG
470 480 490 500 510 520
540
pF1KSD -RKPGESEE
.: :...
NP_005 HKKKGDDQSRQGGAPDAGQE
530 540
>>NP_001243650 (OMIM: 605142) T-complex protein 1 subuni (509 aa)
initn: 938 init1: 423 opt: 957 Z-score: 1111.8 bits: 215.4 E(85289): 3.5e-55
Smith-Waterman score: 998; 35.4% identity (66.0% similar) in 536 aa overlap (5-533:10-505)
10 20 30 40 50
pF1KSD MASMGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPN
:. : :: .:.:. ... :.: ::::::...::::::.
NP_001 MPENVAPRSGATAGAAGGRGKGAYQDRDKPAQIRF-----SNISAAKAVADAIRTSLGPK
10 20 30 40 50
60 70 80 90 100 110
pF1KSD GLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGA
:.:::.: ::::.:: : :::::.::..::.
NP_001 GMDKMLV------------------------------ELSKAQDIEAGDGTTSVVIIAGS
60 70 80
120 130 140 150 160 170
pF1KSD LLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGS
::. .::..:::: :......: . .:: : .: :...: : :...: :.:.:
NP_001 LLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRP--VELSDRETLLNSATTSLNS
90 100 110 120 130 140
180 190 200 210 220 230
pF1KSD KVVNSCHRQMAEIAVNAVLTVAD-MERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDF
:::.. .. ..::::. : : .::.. ::. :.:: ..: .:..:... .
NP_001 KVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKV
150 160 170 180 190 200
240 250 260 270 280 290
pF1KSD SHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKE
:. . . :: :::... . :: ... :.. .. . . :. . ....:::.
NP_001 SNSGITR-VEKAKIGLIQFCLSAPKTDMDNQIVVSDYAQMDRVLREERAYILNLVKQIKK
210 220 230 240 250 260
300 310 320 330 340
pF1KSD TGANLAICQWG-----FDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELT
:: :. . : . ..: : :.: . .. ... . .::.: . : . : .....:
NP_001 TGCNVLLIQKSILRDALSDLALHFLNKMKIMVIKDIEREDIEFICKTIGTKPVAHIDQFT
270 280 290 300 310 320
350 360 370 380 390 400
pF1KSD AEKLGFAGLVQEISFGTTKDKMLVIEQCKN-SRAVTIFIRGGNKMIIEEAKRSLHDALCV
:. :: : :..:.... . :.: : : . ...::: .::.::..::::.::.::::::
NP_001 ADMLGSAELAEEVNLNGS-GKLLKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCV
330 340 350 360 370 380
410 420 430 440 450 460
pF1KSD IRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGM
:: :.. .. :::: :: :: ... . .:.: .::::::.:::: .:.::.:.
NP_001 IRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGL
390 400 410 420 430 440
470 480 490 500 510 520
pF1KSD NPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMIL
:::.:.::.: :... . : ::. . : ... .. :.. :. . . ..:::. :: ::
NP_001 NPISTVTELRNRHAQGEKTA-GINVRKGGISNILEELVVQPLLVSVSALTLATETVRSIL
450 460 470 480 490 500
530 540
pF1KSD KIDDIRKPGESEE
::::.
NP_001 KIDDVVNTR
>>NP_006422 (OMIM: 605139) T-complex protein 1 subunit b (535 aa)
initn: 689 init1: 299 opt: 938 Z-score: 1089.4 bits: 211.3 E(85289): 6.1e-54
Smith-Waterman score: 938; 34.5% identity (69.9% similar) in 505 aa overlap (36-535:27-522)
10 20 30 40 50 60
pF1KSD TLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVD--
. ...: :... ....:::.:.::....
NP_006 MASLSLAPVNIFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSG
10 20 30 40 50
70 80 90 100 110 120
pF1KSD KDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQL
.:... :::::::::. . ::. ::..:..:. ::::.:::::.:.:::. ::.:::.:
NP_006 RDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KSD LDRGIHPIRIADGYEQAARVAIEHL-DKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCH
. . ::: : :...:...: : : .. : ..: . :.. : :::.::... .
NP_006 IAKKIHPQTIIAGWREATKAAREALLSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KSD RQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKK
.....::.::: . . . ..: :.. :.:: : :. : .: ..:: .. : ::.
NP_006 DHFTKLAVEAVLRL----KGSGNLEAIHIIKKLGGSLADSYLDEGFLLDKKIGVNQ-PKR
180 190 200 210 220 230
250 260 270 280 290 300
pF1KSD VEDAKIAILTCPFEPPKPKT-KHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAI
.:.::: : . .. : : .. : :. ... ::::..: ...: . : : :
NP_006 IENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFI
240 250 260 270 280 290
310 320 330 340 350 360
pF1KSD CQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQE
. . . ..:. .. :.. . .: .:..:::.:. :.. ::: :..:
NP_006 NRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEE
300 310 320 330 340 350
370 380 390 400 410 420
pF1KSD ISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYG
. .: .::.. . ..: :: .::....:..::.:::::::::. . ..:.:.:::
NP_006 VMIG--EDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYG
360 370 380 390 400
430 440 450 460 470 480
pF1KSD GGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQ
:: .:. : ::.: :.. : : ::...: ::...: ...:.:.. . ....:: .
NP_006 GGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAH
410 420 430 440 450 460
490 500 510 520 530 540
pF1KSD VKEMNPALGIDCLHKGT-NDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESE
.: : . :.: ...:: .:: . :.. :.: . :.. ...::..:.: :
NP_006 -SEGNTTAGLD-MREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPRK
470 480 490 500 510 520
pF1KSD E
NP_006 RVPDHHPC
530
>>NP_006420 (OMIM: 605140) T-complex protein 1 subunit e (543 aa)
initn: 785 init1: 366 opt: 895 Z-score: 1039.5 bits: 202.1 E(85289): 3.7e-51
Smith-Waterman score: 895; 30.1% identity (67.6% similar) in 528 aa overlap (15-536:5-523)
10 20 30 40 50 60
pF1KSD MASMGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKM
: ...:. .:. :. : :.: : ...:...::.::: :.::.
NP_006 MMPTPVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKL
10 20 30 40
70 80 90 100 110 120
pF1KSD MVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEA
.:: : .:..:::::::...:: : :: .:...:::: :.:::::.:..::. .:...
NP_006 IVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQV
50 60 70 80 90 100
130 140 150 160 170
pF1KSD EQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVL-VD-IKDTEPLIQTAKTTLGSKVV
. ...:.:: : ... :...:.... .:. .: .: ... . : . : :.:.::..
NP_006 KPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLI
110 120 130 140 150 160
180 190 200 210 220 230
pF1KSD NSCHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHP-
.. . .:...:.::. . :. .....: .. :: :::..:. :: : ::.
NP_006 SQQKAFFAKMVVDAVMMLDDL----LQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAG
170 180 190 200 210 220
240 250 260 270 280 290
pF1KSD --QMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKET
..::: .. :::.:. .: : . .. : .::::.:. : . . . ...:...
NP_006 FEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHS
230 240 250 260 270 280
300 310 320 330 340 350
pF1KSD GANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGF
::.... . . : :.. . . .. . : ... .: :: : . :.:. ::
NP_006 GAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGR
290 300 310 320 330 340
360 370 380 390 400 410
pF1KSD AGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRD
. .: ..: . .... : .... :...::: ....::..::::::. ..: :..
NP_006 CQVFEETQIGGERYNFFT--GCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKN
350 360 370 380 390 400
420 430 440 450 460 470
pF1KSD NRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMT
. :: :::: :. . . . . : .: . :.: :::.:: : .:.:.. . ..
NP_006 DSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILN
410 420 430 440 450 460
480 490 500 510 520 530
pF1KSD EVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDD-IR
..:::... . :.: .. : . : : . . . .. :.. . .:...:. :.
NP_006 KLRARHAQG-GTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK
470 480 490 500 510 520
540
pF1KSD KPGESEE
.:
NP_006 NPRSTVDAPTAAGRGRGRGRPH
530 540
541 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 23:58:14 2016 done: Wed Nov 2 23:58:15 2016
Total Scan time: 7.270 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]