FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0115, 456 aa
  1>>>pF1KSDA0115 456 - 456 aa - 456 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3145+/-0.000957; mu= 16.8395+/- 0.058
 mean_var=57.7225+/-11.513, 0's: 0 Z-trim(103.8): 25  B-trim: 0 in 0/48
 Lambda= 0.168811
 statistics sampled from 7594 (7597) to 7594 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.601), E-opt: 0.2 (0.233), width:  16
 Scan time:  3.000

The best scores are:                                      opt bits E(32554)
CCDS212.1 DDOST gene_id:1650|Hs108|chr1            ( 456) 3000 739.2  2e-213


>>CCDS212.1 DDOST gene_id:1650|Hs108|chr1                 (456 aa)
 initn: 3000 init1: 3000 opt: 3000  Z-score: 3945.0  bits: 739.2 E(32554): 2e-213
Smith-Waterman score: 3000; 99.6% identity (99.6% similar) in 456 aa overlap (1-456:1-456)

               10        20        30        40        50        60
pF1KSD MGYFRCAGAGSFGRRRKMEPSTAARAWALFWLLLPLLGAVCASGPRTLVLLDNLNVRETH
       ::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MGYFRCARAGSFGRRRKMEPSTAARAWALFWLLLPLLGAVCASGPRTLVLLDNLNVRETH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLFFRSLKDRGFELTFKTADDPSLSLIKYGEFLYDNLIIFSPSVEDFGGNINVETISAFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 SLFFRSLKDRGFELTFKTADDPSLSLIKYGEFLYDNLIIFSPSVEDFGGNINVETISAFI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDISDLGQHTLIVADTENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 DGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDISDLGQHTLIVADTENL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFFPDKPITQYPHAVGKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 LKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFFPDKPITQYPHAVGKN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TLLIAGLQARNNARVIFSGSLDFFSDSFFNSAVQKAAPGSQRYSQTGNYELAVALSRWVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 TLLIAGLQARNNARVIFSGSLDFFSDSFFNSAVQKAAPGSQRYSQTGNYELAVALSRWVF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD KEEGVLRVGPVSHHRVGETAPPNAYTVTDLVEYSIVIQQLSNGKWVPFDGDDIQLEFVRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 KEEGVLRVGPVSHHRVGETAPPNAYTVTDLVEYSIVIQQLSNGKWVPFDGDDIQLEFVRI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD DPFVRTFLKKKGGKYSVQFKLPDVYGVFQFKVDYNRLGYTHLYSSTQVSVRPLQHTQYER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 DPFVRTFLKKKGGKYSVQFKLPDVYGVFQFKVDYNRLGYTHLYSSTQVSVRPLQHTQYER
              370       380       390       400       410       420

              430       440       450      
pF1KSD FIPSAYPYYASAFPMMLGLFIFSIVFLHMKEKEKSD
       ::::::::::::: ::::::::::::::::::::::
CCDS21 FIPSAYPYYASAFSMMLGLFIFSIVFLHMKEKEKSD
              430       440       450      




456 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:03:07 2016 done: Thu Nov  3 00:03:07 2016
 Total Scan time:  3.000 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]