FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0115, 456 aa
  1>>>pF1KSDA0115 456 - 456 aa - 456 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1885+/-0.000428; mu= 17.7996+/- 0.027
 mean_var=63.2479+/-12.909, 0's: 0 Z-trim(110.6): 10  B-trim: 583 in 1/49
 Lambda= 0.161269
 statistics sampled from 19005 (19008) to 19005 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.585), E-opt: 0.2 (0.223), width:  16
 Scan time:  7.610

The best scores are:                                      opt bits E(85289)
NP_005207 (OMIM: 602202,614507) dolichyl-diphospho ( 456) 3011 709.7 4.1e-204


>>NP_005207 (OMIM: 602202,614507) dolichyl-diphosphoolig  (456 aa)
 initn: 3011 init1: 3011 opt: 3011  Z-score: 3785.4  bits: 709.7 E(85289): 4.1e-204
Smith-Waterman score: 3011; 99.8% identity (99.8% similar) in 456 aa overlap (1-456:1-456)

               10        20        30        40        50        60
pF1KSD MGYFRCAGAGSFGRRRKMEPSTAARAWALFWLLLPLLGAVCASGPRTLVLLDNLNVRETH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MGYFRCAGAGSFGRRRKMEPSTAARAWALFWLLLPLLGAVCASGPRTLVLLDNLNVRETH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SLFFRSLKDRGFELTFKTADDPSLSLIKYGEFLYDNLIIFSPSVEDFGGNINVETISAFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SLFFRSLKDRGFELTFKTADDPSLSLIKYGEFLYDNLIIFSPSVEDFGGNINVETISAFI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDISDLGQHTLIVADTENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DGGGSVLVAASSDIGDPLRELGSECGIEFDEEKTAVIDHHNYDISDLGQHTLIVADTENL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFFPDKPITQYPHAVGKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LKAPTIVGKSSLNPILFRGVGMVADPDNPLVLDILTGSSTSYSFFPDKPITQYPHAVGKN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD TLLIAGLQARNNARVIFSGSLDFFSDSFFNSAVQKAAPGSQRYSQTGNYELAVALSRWVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TLLIAGLQARNNARVIFSGSLDFFSDSFFNSAVQKAAPGSQRYSQTGNYELAVALSRWVF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD KEEGVLRVGPVSHHRVGETAPPNAYTVTDLVEYSIVIQQLSNGKWVPFDGDDIQLEFVRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KEEGVLRVGPVSHHRVGETAPPNAYTVTDLVEYSIVIQQLSNGKWVPFDGDDIQLEFVRI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD DPFVRTFLKKKGGKYSVQFKLPDVYGVFQFKVDYNRLGYTHLYSSTQVSVRPLQHTQYER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DPFVRTFLKKKGGKYSVQFKLPDVYGVFQFKVDYNRLGYTHLYSSTQVSVRPLQHTQYER
              370       380       390       400       410       420

              430       440       450      
pF1KSD FIPSAYPYYASAFPMMLGLFIFSIVFLHMKEKEKSD
       ::::::::::::: ::::::::::::::::::::::
NP_005 FIPSAYPYYASAFSMMLGLFIFSIVFLHMKEKEKSD
              430       440       450      




456 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:03:08 2016 done: Thu Nov  3 00:03:09 2016
 Total Scan time:  7.610 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]