Result of FASTA (omim) for pF1KSDA0120
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0120, 199 aa
  1>>>pF1KSDA0120 199 - 199 aa - 199 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1380+/-0.000328; mu= 14.4621+/- 0.020
 mean_var=69.4353+/-14.403, 0's: 0 Z-trim(115.1): 75  B-trim: 782 in 2/52
 Lambda= 0.153916
 statistics sampled from 25214 (25289) to 25214 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.297), width:  16
 Scan time:  5.740

The best scores are:                                      opt bits E(85289)
NP_001264152 (OMIM: 604634) transgelin-2 isoform b ( 199) 1356 309.7   2e-84
NP_003555 (OMIM: 604634) transgelin-2 isoform b [H ( 199) 1356 309.7   2e-84
NP_001264153 (OMIM: 604634) transgelin-2 isoform a ( 220) 1356 309.7 2.1e-84
NP_037391 (OMIM: 607953) transgelin-3 [Homo sapien ( 199) 1003 231.3 7.8e-61
NP_001008273 (OMIM: 607953) transgelin-3 [Homo sap ( 199) 1003 231.3 7.8e-61
NP_001008274 (OMIM: 607953) transgelin-3 [Homo sap ( 199) 1003 231.3 7.8e-61
NP_001001522 (OMIM: 600818) transgelin [Homo sapie ( 201)  919 212.7 3.2e-55
NP_003177 (OMIM: 600818) transgelin [Homo sapiens] ( 201)  919 212.7 3.2e-55
XP_016855734 (OMIM: 602374) PREDICTED: calponin-3  ( 288)  394 96.2 5.3e-20
NP_001272985 (OMIM: 602374) calponin-3 isoform 3 [ ( 288)  394 96.2 5.3e-20
NP_001830 (OMIM: 602374) calponin-3 isoform 1 [Hom ( 329)  394 96.3 5.9e-20
NP_004359 (OMIM: 602373) calponin-2 isoform a [Hom ( 309)  390 95.3   1e-19
NP_001290 (OMIM: 600806) calponin-1 isoform 1 [Hom ( 297)  385 94.2 2.2e-19
XP_016881778 (OMIM: 600806) PREDICTED: calponin-1  ( 363)  385 94.3 2.6e-19
XP_005259798 (OMIM: 600806) PREDICTED: calponin-1  ( 247)  371 91.1 1.6e-18
NP_001295271 (OMIM: 600806) calponin-1 isoform 2 [ ( 247)  371 91.1 1.6e-18
NP_001295270 (OMIM: 600806) calponin-1 isoform 2 [ ( 247)  371 91.1 1.6e-18
NP_958434 (OMIM: 602373) calponin-2 isoform b [Hom ( 270)  314 78.4 1.1e-14
NP_001290428 (OMIM: 602373) calponin-2 isoform c [ ( 298)  185 49.8 5.1e-06
NP_001290430 (OMIM: 602373) calponin-2 isoform d [ ( 330)  174 47.4   3e-05
NP_001272984 (OMIM: 602374) calponin-3 isoform 2 [ ( 283)  162 44.7 0.00017


>>NP_001264152 (OMIM: 604634) transgelin-2 isoform b [Ho  (199 aa)
 initn: 1356 init1: 1356 opt: 1356  Z-score: 1636.8  bits: 309.7 E(85289): 2e-84
Smith-Waterman score: 1356; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KSD MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT
              130       140       150       160       170       180

              190         
pF1KSD NRGASQAGMTGYGMPRQIL
       :::::::::::::::::::
NP_001 NRGASQAGMTGYGMPRQIL
              190         

>>NP_003555 (OMIM: 604634) transgelin-2 isoform b [Homo   (199 aa)
 initn: 1356 init1: 1356 opt: 1356  Z-score: 1636.8  bits: 309.7 E(85289): 2e-84
Smith-Waterman score: 1356; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KSD MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT
              130       140       150       160       170       180

              190         
pF1KSD NRGASQAGMTGYGMPRQIL
       :::::::::::::::::::
NP_003 NRGASQAGMTGYGMPRQIL
              190         

>>NP_001264153 (OMIM: 604634) transgelin-2 isoform a [Ho  (220 aa)
 initn: 1356 init1: 1356 opt: 1356  Z-score: 1636.2  bits: 309.7 E(85289): 2.1e-84
Smith-Waterman score: 1356; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:22-220)

                                    10        20        30         
pF1KSD                      MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCR
                            :::::::::::::::::::::::::::::::::::::::
NP_001 MSAFSLALALVSSPQPPPPIGMANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCR
               10        20        30        40        50        60

      40        50        60        70        80        90         
pF1KSD KDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQA
               70        80        90       100       110       120

     100       110       120       130       140       150         
pF1KSD AERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENP
              130       140       150       160       170       180

     160       170       180       190         
pF1KSD RNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL
       ::::::::::::::::::::::::::::::::::::::::
NP_001 RNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL
              190       200       210       220

>>NP_037391 (OMIM: 607953) transgelin-3 [Homo sapiens]    (199 aa)
 initn: 1019 init1: 1003 opt: 1003  Z-score: 1213.2  bits: 231.3 E(85289): 7.8e-61
Smith-Waterman score: 1003; 69.8% identity (89.4% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KSD MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT
       ::::::.::::::::.:::..::::::. :..::  :: .:. .: ::: .::.:: :::
NP_037 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK
       :::.:::.::: :: :. ::. : :::::::::::::.::: ::. ::::::::::::::
NP_037 VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT
       .:: :::::: ::..::..::: . :.:.:: .:...: :.::..::..:.::::::::.
NP_037 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS
              130       140       150       160       170       180

              190         
pF1KSD NRGASQAGMTGYGMPRQIL
       :.::::::::::::::::.
NP_037 NKGASQAGMTGYGMPRQIM
              190         

>>NP_001008273 (OMIM: 607953) transgelin-3 [Homo sapiens  (199 aa)
 initn: 1019 init1: 1003 opt: 1003  Z-score: 1213.2  bits: 231.3 E(85289): 7.8e-61
Smith-Waterman score: 1003; 69.8% identity (89.4% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KSD MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT
       ::::::.::::::::.:::..::::::. :..::  :: .:. .: ::: .::.:: :::
NP_001 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK
       :::.:::.::: :: :. ::. : :::::::::::::.::: ::. ::::::::::::::
NP_001 VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT
       .:: :::::: ::..::..::: . :.:.:: .:...: :.::..::..:.::::::::.
NP_001 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS
              130       140       150       160       170       180

              190         
pF1KSD NRGASQAGMTGYGMPRQIL
       :.::::::::::::::::.
NP_001 NKGASQAGMTGYGMPRQIM
              190         

>>NP_001008274 (OMIM: 607953) transgelin-3 [Homo sapiens  (199 aa)
 initn: 1019 init1: 1003 opt: 1003  Z-score: 1213.2  bits: 231.3 E(85289): 7.8e-61
Smith-Waterman score: 1003; 69.8% identity (89.4% similar) in 199 aa overlap (1-199:1-199)

               10        20        30        40        50        60
pF1KSD MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT
       ::::::.::::::::.:::..::::::. :..::  :: .:. .: ::: .::.:: :::
NP_001 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGK
       :::.:::.::: :: :. ::. : :::::::::::::.::: ::. ::::::::::::::
NP_001 VLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGT
       .:: :::::: ::..::..::: . :.:.:: .:...: :.::..::..:.::::::::.
NP_001 DMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGS
              130       140       150       160       170       180

              190         
pF1KSD NRGASQAGMTGYGMPRQIL
       :.::::::::::::::::.
NP_001 NKGASQAGMTGYGMPRQIM
              190         

>>NP_001001522 (OMIM: 600818) transgelin [Homo sapiens]   (201 aa)
 initn: 930 init1: 567 opt: 919  Z-score: 1112.3  bits: 212.7 E(85289): 3.2e-55
Smith-Waterman score: 919; 65.0% identity (87.5% similar) in 200 aa overlap (1-199:1-200)

               10        20        30        40        50        60
pF1KSD MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT
       :::.::.::.:::::.::::.:: .::. :..:: .::  :::::. :: .:: :::.:.
NP_001 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV
               10        20        30        40        50        60

               70        80         90       100       110         
pF1KSD VLCELINALYPEGQAPVKKIQAS-TMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG
       .: .:.:.:::.:. :::  .   .:.::::::..:::.::: ::.  ::.::::::.::
NP_001 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLFEG
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KSD KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG
       :.:: :::::: ::.:::...:: . :::::: ::..:. :.:...::::::.:::::::
NP_001 KDMAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG
              130       140       150       160       170       180

     180       190          
pF1KSD TNRGASQAGMTGYGMPRQIL 
       .::::::::::::: ::::. 
NP_001 SNRGASQAGMTGYGRPRQIIS
              190       200 

>>NP_003177 (OMIM: 600818) transgelin [Homo sapiens]      (201 aa)
 initn: 930 init1: 567 opt: 919  Z-score: 1112.3  bits: 212.7 E(85289): 3.2e-55
Smith-Waterman score: 919; 65.0% identity (87.5% similar) in 200 aa overlap (1-199:1-200)

               10        20        30        40        50        60
pF1KSD MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT
       :::.::.::.:::::.::::.:: .::. :..:: .::  :::::. :: .:: :::.:.
NP_003 MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV
               10        20        30        40        50        60

               70        80         90       100       110         
pF1KSD VLCELINALYPEGQAPVKKIQAS-TMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG
       .: .:.:.:::.:. :::  .   .:.::::::..:::.::: ::.  ::.::::::.::
NP_003 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLFEG
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KSD KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG
       :.:: :::::: ::.:::...:: . :::::: ::..:. :.:...::::::.:::::::
NP_003 KDMAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG
              130       140       150       160       170       180

     180       190          
pF1KSD TNRGASQAGMTGYGMPRQIL 
       .::::::::::::: ::::. 
NP_003 SNRGASQAGMTGYGRPRQIIS
              190       200 

>>XP_016855734 (OMIM: 602374) PREDICTED: calponin-3 isof  (288 aa)
 initn: 539 init1: 174 opt: 394  Z-score: 480.0  bits: 96.2 E(85289): 5.3e-20
Smith-Waterman score: 394; 45.9% identity (73.0% similar) in 148 aa overlap (51-198:6-147)

               30        40        50        60        70        80
pF1KSD QYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKI
                                     :::  :::: .:::::: : :   . :::.
XP_016                          MSIGPNFQLGLKDGIILCELINKLQP---GSVKKV
                                        10        20           30  

               90       100       110       120       130       140
pF1KSD QASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARD
       . :.. . :.:.:..:..: . ::..  :::.. ::.:. ::. :: ::. :.::  :. 
XP_016 NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGL--AKT
             40        50        60        70        80          90

              150       160       170       180       190          
pF1KSD DGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL 
        : :    .   : .... : :....:. :..:::::::::. :::::::.::  :..  
XP_016 KG-FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRRHLYD
               100       110       120       130       140         

XP_016 PKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTN
     150       160       170       180       190       200         

>>NP_001272985 (OMIM: 602374) calponin-3 isoform 3 [Homo  (288 aa)
 initn: 539 init1: 174 opt: 394  Z-score: 480.0  bits: 96.2 E(85289): 5.3e-20
Smith-Waterman score: 394; 45.9% identity (73.0% similar) in 148 aa overlap (51-198:6-147)

               30        40        50        60        70        80
pF1KSD QYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKI
                                     :::  :::: .:::::: : :   . :::.
NP_001                          MSIGPNFQLGLKDGIILCELINKLQP---GSVKKV
                                        10        20           30  

               90       100       110       120       130       140
pF1KSD QASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARD
       . :.. . :.:.:..:..: . ::..  :::.. ::.:. ::. :: ::. :.::  :. 
NP_001 NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGL--AKT
             40        50        60        70        80          90

              150       160       170       180       190          
pF1KSD DGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL 
        : :    .   : .... : :....:. :..:::::::::. :::::::.::  :..  
NP_001 KG-FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRRHLYD
               100       110       120       130       140         

NP_001 PKMQTDKPFDQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTN
     150       160       170       180       190       200         




199 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:05:34 2016 done: Thu Nov  3 00:05:35 2016
 Total Scan time:  5.740 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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