Result of FASTA (omim) for
pF1KSDA0122
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0122, 929 aa
1>>>pF1KSDA0122 929 - 929 aa - 929 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.0815+/-0.000399; mu= 6.7714+/- 0.025
mean_var=269.2750+/-56.488, 0's: 0 Z-trim(120.8): 46 B-trim: 0 in 0/55
Lambda= 0.078159
statistics sampled from 36352 (36413) to 36352 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.427), width: 16
Scan time: 12.370
The best scores are: opt bits E(85289)
NP_001191396 (OMIM: 300080,311900) RNA-binding pro ( 929) 6200 713.1 1.6e-204
XP_005272734 (OMIM: 300080,311900) PREDICTED: RNA- ( 994) 6200 713.2 1.6e-204
NP_005667 (OMIM: 300080,311900) RNA-binding protei ( 930) 6188 711.8 4e-204
NP_001191397 (OMIM: 300080,311900) RNA-binding pro ( 995) 6188 711.8 4.2e-204
XP_005272736 (OMIM: 300080,311900) PREDICTED: RNA- ( 917) 5213 601.8 4.9e-171
NP_690595 (OMIM: 300080,311900) RNA-binding protei ( 852) 5211 601.6 5.5e-171
XP_005272735 (OMIM: 300080,311900) PREDICTED: RNA- ( 918) 5201 600.5 1.3e-170
NP_001191395 (OMIM: 300080,311900) RNA-binding pro ( 853) 5199 600.2 1.4e-170
XP_016885374 (OMIM: 300080,311900) PREDICTED: RNA- ( 726) 4809 556.2 2.2e-157
XP_016885373 (OMIM: 300080,311900) PREDICTED: RNA- ( 727) 4797 554.8 5.5e-157
XP_006724626 (OMIM: 300080,311900) PREDICTED: RNA- ( 727) 4797 554.8 5.5e-157
XP_011542291 (OMIM: 300080,311900) PREDICTED: RNA- ( 618) 4041 469.5 2.3e-131
XP_016860995 (OMIM: 606884) PREDICTED: RNA-binding ( 568) 1770 213.4 2.6e-54
XP_016860994 (OMIM: 606884) PREDICTED: RNA-binding ( 568) 1770 213.4 2.6e-54
XP_011531563 (OMIM: 606884) PREDICTED: RNA-binding ( 741) 1770 213.5 3.1e-54
NP_005769 (OMIM: 606884) RNA-binding protein 5 [Ho ( 815) 1770 213.5 3.4e-54
XP_016860992 (OMIM: 606884) PREDICTED: RNA-binding ( 815) 1770 213.5 3.4e-54
XP_016860996 (OMIM: 606884) PREDICTED: RNA-binding ( 509) 1514 184.5 1.2e-45
XP_016860993 (OMIM: 606884) PREDICTED: RNA-binding ( 682) 1514 184.6 1.4e-45
XP_006712980 (OMIM: 606884) PREDICTED: RNA-binding ( 756) 1514 184.6 1.6e-45
XP_016860988 (OMIM: 606886) PREDICTED: RNA-binding ( 601) 592 80.6 2.6e-14
NP_001161054 (OMIM: 606886) RNA-binding protein 6 ( 601) 592 80.6 2.6e-14
XP_016860991 (OMIM: 606886) PREDICTED: RNA-binding ( 601) 592 80.6 2.6e-14
XP_005264844 (OMIM: 606886) PREDICTED: RNA-binding ( 601) 592 80.6 2.6e-14
XP_016860989 (OMIM: 606886) PREDICTED: RNA-binding ( 601) 592 80.6 2.6e-14
XP_016860990 (OMIM: 606886) PREDICTED: RNA-binding ( 601) 592 80.6 2.6e-14
XP_005264843 (OMIM: 606886) PREDICTED: RNA-binding ( 601) 592 80.6 2.6e-14
XP_016860987 (OMIM: 606886) PREDICTED: RNA-binding ( 609) 592 80.6 2.6e-14
XP_016860986 (OMIM: 606886) PREDICTED: RNA-binding ( 638) 592 80.6 2.7e-14
XP_005264842 (OMIM: 606886) PREDICTED: RNA-binding ( 642) 592 80.6 2.7e-14
XP_006712979 (OMIM: 606886) PREDICTED: RNA-binding ( 991) 592 80.8 3.7e-14
XP_005264841 (OMIM: 606886) PREDICTED: RNA-binding ( 991) 592 80.8 3.7e-14
NP_005768 (OMIM: 606886) RNA-binding protein 6 iso (1123) 592 80.9 4.1e-14
XP_011531564 (OMIM: 606884) PREDICTED: RNA-binding ( 741) 521 72.7 7.8e-12
>>NP_001191396 (OMIM: 300080,311900) RNA-binding protein (929 aa)
initn: 6200 init1: 6200 opt: 6200 Z-score: 3793.0 bits: 713.1 E(85289): 1.6e-204
Smith-Waterman score: 6200; 99.9% identity (99.9% similar) in 929 aa overlap (1-929:1-929)
10 20 30 40 50 60
pF1KSD MEYERRGGRGDRTGRYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEYERRGGRGDRTGRYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEED
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENAND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENAND
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIEAAQLLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIEAAQLLQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD ILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAISQASQGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAISQASQGG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD EGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTGAGPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTGAGPE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD ASLEPGADSVSMQAFSRPQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLKSELQS
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
NP_001 ASLEPGADSVSMQAFSRAQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLKSELQS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD PTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNAQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD SQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWARS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWARS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD LNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDDR
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD PSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRHQQLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRHQQLS
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD GLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKYGGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKYGGI
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD STASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGA
850 860 870 880 890 900
910 920
pF1KSD RGSSYGVTSTESYKETLHKTMVTRFNEAQ
:::::::::::::::::::::::::::::
NP_001 RGSSYGVTSTESYKETLHKTMVTRFNEAQ
910 920
>>XP_005272734 (OMIM: 300080,311900) PREDICTED: RNA-bind (994 aa)
initn: 6200 init1: 6200 opt: 6200 Z-score: 3792.6 bits: 713.2 E(85289): 1.6e-204
Smith-Waterman score: 6200; 99.9% identity (99.9% similar) in 929 aa overlap (1-929:66-994)
10 20 30
pF1KSD MEYERRGGRGDRTGRYGATDRSQDDGGENR
::::::::::::::::::::::::::::::
XP_005 HGSSSGGGWEVKRSQRLRRGPSSPRRPYQDMEYERRGGRGDRTGRYGATDRSQDDGGENR
40 50 60 70 80 90
40 50 60 70 80 90
pF1KSD SRDHDYRDMDYRSYPREYGSQEGKHDYDDSSEEQSAEDSYEASPGSETQRRRRRRHRHSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SRDHDYRDMDYRSYPREYGSQEGKHDYDDSSEEQSAEDSYEASPGSETQRRRRRRHRHSP
100 110 120 130 140 150
100 110 120 130 140 150
pF1KSD TGPPGFPRDGDYRDQDYRTEQGEEEEEEEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TGPPGFPRDGDYRDQDYRTEQGEEEEEEEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQ
160 170 180 190 200 210
160 170 180 190 200 210
pF1KSD SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPK
220 230 240 250 260 270
220 230 240 250 260 270
pF1KSD PKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLL
280 290 300 310 320 330
280 290 300 310 320 330
pF1KSD PLPQPYQAQGVLASQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PLPQPYQAQGVLASQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSN
340 350 360 370 380 390
340 350 360 370 380 390
pF1KSD VRVIKDKQTQLNRGFAFIQLSTIEAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VRVIKDKQTQLNRGFAFIQLSTIEAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMAS
400 410 420 430 440 450
400 410 420 430 440 450
pF1KSD NEGSRISAASVASTAIAAAQWAISQASQGGEGTWATSEEPPVDYSYYQQDEGYGNSQGTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NEGSRISAASVASTAIAAAQWAISQASQGGEGTWATSEEPPVDYSYYQQDEGYGNSQGTE
460 470 480 490 500 510
460 470 480 490 500 510
pF1KSD SSLYAHGYLKGTKGPGITGTKGDPTGAGPEASLEPGADSVSMQAFSRPQPGAAPGIYQQS
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
XP_005 SSLYAHGYLKGTKGPGITGTKGDPTGAGPEASLEPGADSVSMQAFSRAQPGAAPGIYQQS
520 530 540 550 560 570
520 530 540 550 560 570
pF1KSD AEASSSQGTAANSQSYTIMSPAVLKSELQSPTHPSSALPPATSPTAQESYSQYPVPDVST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEASSSQGTAANSQSYTIMSPAVLKSELQSPTHPSSALPPATSPTAQESYSQYPVPDVST
580 590 600 610 620 630
580 590 600 610 620 630
pF1KSD YQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKETGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKETGA
640 650 660 670 680 690
640 650 660 670 680 690
pF1KSD PSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISSLRDDERRESATAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISSLRDDERRESATAD
700 710 720 730 740 750
700 710 720 730 740 750
pF1KSD AGYAILEKKGALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGYAILEKKGALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREE
760 770 780 790 800 810
760 770 780 790 800 810
pF1KSD KLTDWQKLACLLCRRQFPSKEALIRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KLTDWQKLACLLCRRQFPSKEALIRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQ
820 830 840 850 860 870
820 830 840 850 860 870
pF1KSD MKYRDRAAERREKYGIPEPPEPKRRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MKYRDRAAERREKYGIPEPPEPKRRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGW
880 890 900 910 920 930
880 890 900 910 920
pF1KSD KEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ
940 950 960 970 980 990
>>NP_005667 (OMIM: 300080,311900) RNA-binding protein 10 (930 aa)
initn: 3809 init1: 3809 opt: 6188 Z-score: 3785.6 bits: 711.8 E(85289): 4e-204
Smith-Waterman score: 6188; 99.8% identity (99.8% similar) in 930 aa overlap (1-929:1-930)
10 20 30 40 50 60
pF1KSD MEYERRGGRGDRTGRYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MEYERRGGRGDRTGRYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEED
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENAND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENAND
250 260 270 280 290 300
310 320 330 340 350
pF1KSD TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
NP_005 TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLL
310 320 330 340 350 360
360 370 380 390 400 410
pF1KSD QILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAISQASQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAISQASQG
370 380 390 400 410 420
420 430 440 450 460 470
pF1KSD GEGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTGAGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GEGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTGAGP
430 440 450 460 470 480
480 490 500 510 520 530
pF1KSD EASLEPGADSVSMQAFSRPQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLKSELQ
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
NP_005 EASLEPGADSVSMQAFSRAQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLKSELQ
490 500 510 520 530 540
540 550 560 570 580 590
pF1KSD SPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNA
550 560 570 580 590 600
600 610 620 630 640 650
pF1KSD QSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWAR
610 620 630 640 650 660
660 670 680 690 700 710
pF1KSD SLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDD
670 680 690 700 710 720
720 730 740 750 760 770
pF1KSD RPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRHQQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRHQQL
730 740 750 760 770 780
780 790 800 810 820 830
pF1KSD SGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKYGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKYGG
790 800 810 820 830 840
840 850 860 870 880 890
pF1KSD ISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLG
850 860 870 880 890 900
900 910 920
pF1KSD ARGSSYGVTSTESYKETLHKTMVTRFNEAQ
::::::::::::::::::::::::::::::
NP_005 ARGSSYGVTSTESYKETLHKTMVTRFNEAQ
910 920 930
>>NP_001191397 (OMIM: 300080,311900) RNA-binding protein (995 aa)
initn: 3809 init1: 3809 opt: 6188 Z-score: 3785.3 bits: 711.8 E(85289): 4.2e-204
Smith-Waterman score: 6188; 99.8% identity (99.8% similar) in 930 aa overlap (1-929:66-995)
10 20 30
pF1KSD MEYERRGGRGDRTGRYGATDRSQDDGGENR
::::::::::::::::::::::::::::::
NP_001 HGSSSGGGWEVKRSQRLRRGPSSPRRPYQDMEYERRGGRGDRTGRYGATDRSQDDGGENR
40 50 60 70 80 90
40 50 60 70 80 90
pF1KSD SRDHDYRDMDYRSYPREYGSQEGKHDYDDSSEEQSAEDSYEASPGSETQRRRRRRHRHSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRDHDYRDMDYRSYPREYGSQEGKHDYDDSSEEQSAEDSYEASPGSETQRRRRRRHRHSP
100 110 120 130 140 150
100 110 120 130 140 150
pF1KSD TGPPGFPRDGDYRDQDYRTEQGEEEEEEEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGPPGFPRDGDYRDQDYRTEQGEEEEEEEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQ
160 170 180 190 200 210
160 170 180 190 200 210
pF1KSD SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPK
220 230 240 250 260 270
220 230 240 250 260 270
pF1KSD PKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLL
280 290 300 310 320 330
280 290 300 310 320 330
pF1KSD PLPQPYQAQGVLASQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLPQPYQAQGVLASQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSN
340 350 360 370 380 390
340 350 360 370 380
pF1KSD VRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMA
::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
NP_001 VRVIKDKQTQLNRGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMA
400 410 420 430 440 450
390 400 410 420 430 440
pF1KSD SNEGSRISAASVASTAIAAAQWAISQASQGGEGTWATSEEPPVDYSYYQQDEGYGNSQGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNEGSRISAASVASTAIAAAQWAISQASQGGEGTWATSEEPPVDYSYYQQDEGYGNSQGT
460 470 480 490 500 510
450 460 470 480 490 500
pF1KSD ESSLYAHGYLKGTKGPGITGTKGDPTGAGPEASLEPGADSVSMQAFSRPQPGAAPGIYQQ
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_001 ESSLYAHGYLKGTKGPGITGTKGDPTGAGPEASLEPGADSVSMQAFSRAQPGAAPGIYQQ
520 530 540 550 560 570
510 520 530 540 550 560
pF1KSD SAEASSSQGTAANSQSYTIMSPAVLKSELQSPTHPSSALPPATSPTAQESYSQYPVPDVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAEASSSQGTAANSQSYTIMSPAVLKSELQSPTHPSSALPPATSPTAQESYSQYPVPDVS
580 590 600 610 620 630
570 580 590 600 610 620
pF1KSD TYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKETG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKETG
640 650 660 670 680 690
630 640 650 660 670 680
pF1KSD APSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISSLRDDERRESATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISSLRDDERRESATA
700 710 720 730 740 750
690 700 710 720 730 740
pF1KSD DAGYAILEKKGALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAGYAILEKKGALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPERE
760 770 780 790 800 810
750 760 770 780 790 800
pF1KSD EKLTDWQKLACLLCRRQFPSKEALIRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKLTDWQKLACLLCRRQFPSKEALIRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDME
820 830 840 850 860 870
810 820 830 840 850 860
pF1KSD QMKYRDRAAERREKYGIPEPPEPKRRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QMKYRDRAAERREKYGIPEPPEPKRRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMG
880 890 900 910 920 930
870 880 890 900 910 920
pF1KSD WKEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WKEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ
940 950 960 970 980 990
>>XP_005272736 (OMIM: 300080,311900) PREDICTED: RNA-bind (917 aa)
initn: 5199 init1: 5199 opt: 5213 Z-score: 3191.6 bits: 601.8 E(85289): 4.9e-171
Smith-Waterman score: 5507; 91.6% identity (91.6% similar) in 929 aa overlap (1-929:66-917)
10 20 30
pF1KSD MEYERRGGRGDRTGRYGATDRSQDDGGENR
::::::::::::::::::::::::::::::
XP_005 HGSSSGGGWEVKRSQRLRRGPSSPRRPYQDMEYERRGGRGDRTGRYGATDRSQDDGGENR
40 50 60 70 80 90
40 50 60 70 80 90
pF1KSD SRDHDYRDMDYRSYPREYGSQEGKHDYDDSSEEQSAEDSYEASPGSETQRRRRRRHRHSP
:::::::::::::::::::::::::::::::::::::
XP_005 SRDHDYRDMDYRSYPREYGSQEGKHDYDDSSEEQSAE-----------------------
100 110 120 130
100 110 120 130 140 150
pF1KSD TGPPGFPRDGDYRDQDYRTEQGEEEEEEEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQ
::::::
XP_005 ------------------------------------------------------IRGQLQ
160 170 180 190 200 210
pF1KSD SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPK
140 150 160 170 180 190
220 230 240 250 260 270
pF1KSD PKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLL
200 210 220 230 240 250
280 290 300 310 320 330
pF1KSD PLPQPYQAQGVLASQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PLPQPYQAQGVLASQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSN
260 270 280 290 300 310
340 350 360 370 380 390
pF1KSD VRVIKDKQTQLNRGFAFIQLSTIEAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VRVIKDKQTQLNRGFAFIQLSTIEAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMAS
320 330 340 350 360 370
400 410 420 430 440 450
pF1KSD NEGSRISAASVASTAIAAAQWAISQASQGGEGTWATSEEPPVDYSYYQQDEGYGNSQGTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NEGSRISAASVASTAIAAAQWAISQASQGGEGTWATSEEPPVDYSYYQQDEGYGNSQGTE
380 390 400 410 420 430
460 470 480 490 500 510
pF1KSD SSLYAHGYLKGTKGPGITGTKGDPTGAGPEASLEPGADSVSMQAFSRPQPGAAPGIYQQS
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
XP_005 SSLYAHGYLKGTKGPGITGTKGDPTGAGPEASLEPGADSVSMQAFSRAQPGAAPGIYQQS
440 450 460 470 480 490
520 530 540 550 560 570
pF1KSD AEASSSQGTAANSQSYTIMSPAVLKSELQSPTHPSSALPPATSPTAQESYSQYPVPDVST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEASSSQGTAANSQSYTIMSPAVLKSELQSPTHPSSALPPATSPTAQESYSQYPVPDVST
500 510 520 530 540 550
580 590 600 610 620 630
pF1KSD YQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKETGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKETGA
560 570 580 590 600 610
640 650 660 670 680 690
pF1KSD PSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISSLRDDERRESATAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISSLRDDERRESATAD
620 630 640 650 660 670
700 710 720 730 740 750
pF1KSD AGYAILEKKGALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AGYAILEKKGALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREE
680 690 700 710 720 730
760 770 780 790 800 810
pF1KSD KLTDWQKLACLLCRRQFPSKEALIRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KLTDWQKLACLLCRRQFPSKEALIRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQ
740 750 760 770 780 790
820 830 840 850 860 870
pF1KSD MKYRDRAAERREKYGIPEPPEPKRRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MKYRDRAAERREKYGIPEPPEPKRRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGW
800 810 820 830 840 850
880 890 900 910 920
pF1KSD KEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ
860 870 880 890 900 910
>>NP_690595 (OMIM: 300080,311900) RNA-binding protein 10 (852 aa)
initn: 5199 init1: 5199 opt: 5211 Z-score: 3190.7 bits: 601.6 E(85289): 5.5e-171
Smith-Waterman score: 5507; 91.6% identity (91.6% similar) in 929 aa overlap (1-929:1-852)
10 20 30 40 50 60
pF1KSD MEYERRGGRGDRTGRYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 MEYERRGGRGDRTGRYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEED
:::::::
NP_690 SEEQSAE-----------------------------------------------------
130 140 150 160 170 180
pF1KSD EEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH
::::::::::::::::::::::::::::::::::::
NP_690 ------------------------IRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH
70 80 90 100
190 200 210 220 230 240
pF1KSD LQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 LQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPK
110 120 130 140 150 160
250 260 270 280 290 300
pF1KSD SEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENAND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 SEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENAND
170 180 190 200 210 220
310 320 330 340 350 360
pF1KSD TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIEAAQLLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIEAAQLLQ
230 240 250 260 270 280
370 380 390 400 410 420
pF1KSD ILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAISQASQGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 ILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAISQASQGG
290 300 310 320 330 340
430 440 450 460 470 480
pF1KSD EGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTGAGPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 EGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTGAGPE
350 360 370 380 390 400
490 500 510 520 530 540
pF1KSD ASLEPGADSVSMQAFSRPQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLKSELQS
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
NP_690 ASLEPGADSVSMQAFSRAQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLKSELQS
410 420 430 440 450 460
550 560 570 580 590 600
pF1KSD PTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 PTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNAQ
470 480 490 500 510 520
610 620 630 640 650 660
pF1KSD SQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWARS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 SQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWARS
530 540 550 560 570 580
670 680 690 700 710 720
pF1KSD LNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 LNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDDR
590 600 610 620 630 640
730 740 750 760 770 780
pF1KSD PSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRHQQLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 PSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRHQQLS
650 660 670 680 690 700
790 800 810 820 830 840
pF1KSD GLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKYGGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 GLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKYGGI
710 720 730 740 750 760
850 860 870 880 890 900
pF1KSD STASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 STASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGA
770 780 790 800 810 820
910 920
pF1KSD RGSSYGVTSTESYKETLHKTMVTRFNEAQ
:::::::::::::::::::::::::::::
NP_690 RGSSYGVTSTESYKETLHKTMVTRFNEAQ
830 840 850
>>XP_005272735 (OMIM: 300080,311900) PREDICTED: RNA-bind (918 aa)
initn: 4270 init1: 3809 opt: 5201 Z-score: 3184.2 bits: 600.5 E(85289): 1.3e-170
Smith-Waterman score: 5495; 91.5% identity (91.5% similar) in 930 aa overlap (1-929:66-918)
10 20 30
pF1KSD MEYERRGGRGDRTGRYGATDRSQDDGGENR
::::::::::::::::::::::::::::::
XP_005 HGSSSGGGWEVKRSQRLRRGPSSPRRPYQDMEYERRGGRGDRTGRYGATDRSQDDGGENR
40 50 60 70 80 90
40 50 60 70 80 90
pF1KSD SRDHDYRDMDYRSYPREYGSQEGKHDYDDSSEEQSAEDSYEASPGSETQRRRRRRHRHSP
:::::::::::::::::::::::::::::::::::::
XP_005 SRDHDYRDMDYRSYPREYGSQEGKHDYDDSSEEQSAE-----------------------
100 110 120 130
100 110 120 130 140 150
pF1KSD TGPPGFPRDGDYRDQDYRTEQGEEEEEEEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQ
::::::
XP_005 ------------------------------------------------------IRGQLQ
160 170 180 190 200 210
pF1KSD SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPK
140 150 160 170 180 190
220 230 240 250 260 270
pF1KSD PKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PKINEDWLCNKCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLL
200 210 220 230 240 250
280 290 300 310 320 330
pF1KSD PLPQPYQAQGVLASQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PLPQPYQAQGVLASQALSQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSN
260 270 280 290 300 310
340 350 360 370 380
pF1KSD VRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMA
::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
XP_005 VRVIKDKQTQLNRGFAFIQLSTIVEAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMA
320 330 340 350 360 370
390 400 410 420 430 440
pF1KSD SNEGSRISAASVASTAIAAAQWAISQASQGGEGTWATSEEPPVDYSYYQQDEGYGNSQGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SNEGSRISAASVASTAIAAAQWAISQASQGGEGTWATSEEPPVDYSYYQQDEGYGNSQGT
380 390 400 410 420 430
450 460 470 480 490 500
pF1KSD ESSLYAHGYLKGTKGPGITGTKGDPTGAGPEASLEPGADSVSMQAFSRPQPGAAPGIYQQ
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
XP_005 ESSLYAHGYLKGTKGPGITGTKGDPTGAGPEASLEPGADSVSMQAFSRAQPGAAPGIYQQ
440 450 460 470 480 490
510 520 530 540 550 560
pF1KSD SAEASSSQGTAANSQSYTIMSPAVLKSELQSPTHPSSALPPATSPTAQESYSQYPVPDVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SAEASSSQGTAANSQSYTIMSPAVLKSELQSPTHPSSALPPATSPTAQESYSQYPVPDVS
500 510 520 530 540 550
570 580 590 600 610 620
pF1KSD TYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKETG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKETG
560 570 580 590 600 610
630 640 650 660 670 680
pF1KSD APSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISSLRDDERRESATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 APSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKENFKNSFQPISSLRDDERRESATA
620 630 640 650 660 670
690 700 710 720 730 740
pF1KSD DAGYAILEKKGALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DAGYAILEKKGALAERQHTSMDLPKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPERE
680 690 700 710 720 730
750 760 770 780 790 800
pF1KSD EKLTDWQKLACLLCRRQFPSKEALIRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKLTDWQKLACLLCRRQFPSKEALIRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDME
740 750 760 770 780 790
810 820 830 840 850 860
pF1KSD QMKYRDRAAERREKYGIPEPPEPKRRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QMKYRDRAAERREKYGIPEPPEPKRRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMG
800 810 820 830 840 850
870 880 890 900 910 920
pF1KSD WKEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WKEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ
860 870 880 890 900 910
>>NP_001191395 (OMIM: 300080,311900) RNA-binding protein (853 aa)
initn: 4270 init1: 3809 opt: 5199 Z-score: 3183.4 bits: 600.2 E(85289): 1.4e-170
Smith-Waterman score: 5495; 91.5% identity (91.5% similar) in 930 aa overlap (1-929:1-853)
10 20 30 40 50 60
pF1KSD MEYERRGGRGDRTGRYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEYERRGGRGDRTGRYGATDRSQDDGGENRSRDHDYRDMDYRSYPREYGSQEGKHDYDDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SEEQSAEDSYEASPGSETQRRRRRRHRHSPTGPPGFPRDGDYRDQDYRTEQGEEEEEEED
:::::::
NP_001 SEEQSAE-----------------------------------------------------
130 140 150 160 170 180
pF1KSD EEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH
::::::::::::::::::::::::::::::::::::
NP_001 ------------------------IRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSH
70 80 90 100
190 200 210 220 230 240
pF1KSD LQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKCFKCGVPK
110 120 130 140 150 160
250 260 270 280 290 300
pF1KSD SEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENAND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEPSSENAND
170 180 190 200 210 220
310 320 330 340 350
pF1KSD TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
NP_001 TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVEAAQLL
230 240 250 260 270 280
360 370 380 390 400 410
pF1KSD QILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAISQASQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAISQASQG
290 300 310 320 330 340
420 430 440 450 460 470
pF1KSD GEGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTGAGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGDPTGAGP
350 360 370 380 390 400
480 490 500 510 520 530
pF1KSD EASLEPGADSVSMQAFSRPQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLKSELQ
:::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
NP_001 EASLEPGADSVSMQAFSRAQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAVLKSELQ
410 420 430 440 450 460
540 550 560 570 580 590
pF1KSD SPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNA
470 480 490 500 510 520
600 610 620 630 640 650
pF1KSD QSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKDMERWAR
530 540 550 560 570 580
660 670 680 690 700 710
pF1KSD SLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDD
590 600 610 620 630 640
720 730 740 750 760 770
pF1KSD RPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRHQQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEALIRHQQL
650 660 670 680 690 700
780 790 800 810 820 830
pF1KSD SGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKYGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPKRRKYGG
710 720 730 740 750 760
840 850 860 870 880 890
pF1KSD ISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLG
770 780 790 800 810 820
900 910 920
pF1KSD ARGSSYGVTSTESYKETLHKTMVTRFNEAQ
::::::::::::::::::::::::::::::
NP_001 ARGSSYGVTSTESYKETLHKTMVTRFNEAQ
830 840 850
>>XP_016885374 (OMIM: 300080,311900) PREDICTED: RNA-bind (726 aa)
initn: 4809 init1: 4809 opt: 4809 Z-score: 2946.7 bits: 556.2 E(85289): 2.2e-157
Smith-Waterman score: 4809; 99.9% identity (99.9% similar) in 726 aa overlap (204-929:1-726)
180 190 200 210 220 230
pF1KSD AFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKC
::::::::::::::::::::::::::::::
XP_016 MHYSDPKPKINEDWLCNKCGVQNFKRREKC
10 20 30
240 250 260 270 280 290
pF1KSD FKCGVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKCGVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEP
40 50 60 70 80 90
300 310 320 330 340 350
pF1KSD SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI
100 110 120 130 140 150
360 370 380 390 400 410
pF1KSD EAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWAI
160 170 180 190 200 210
420 430 440 450 460 470
pF1KSD SQASQGGEGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQASQGGEGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKGD
220 230 240 250 260 270
480 490 500 510 520 530
pF1KSD PTGAGPEASLEPGADSVSMQAFSRPQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAV
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
XP_016 PTGAGPEASLEPGADSVSMQAFSRAQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPAV
280 290 300 310 320 330
540 550 560 570 580 590
pF1KSD LKSELQSPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LKSELQSPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNS
340 350 360 370 380 390
600 610 620 630 640 650
pF1KSD QYYYNAQSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QYYYNAQSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAKD
400 410 420 430 440 450
660 670 680 690 700 710
pF1KSD MERWARSLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MERWARSLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDLP
460 470 480 490 500 510
720 730 740 750 760 770
pF1KSD KLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEAL
520 530 540 550 560 570
780 790 800 810 820 830
pF1KSD IRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEPK
580 590 600 610 620 630
840 850 860 870 880 890
pF1KSD RRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRV
640 650 660 670 680 690
900 910 920
pF1KSD RGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ
::::::::::::::::::::::::::::::::::::
XP_016 RGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ
700 710 720
>>XP_016885373 (OMIM: 300080,311900) PREDICTED: RNA-bind (727 aa)
initn: 3809 init1: 3809 opt: 4797 Z-score: 2939.3 bits: 554.8 E(85289): 5.5e-157
Smith-Waterman score: 4797; 99.7% identity (99.7% similar) in 727 aa overlap (204-929:1-727)
180 190 200 210 220 230
pF1KSD AFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNKCGVQNFKRREKC
::::::::::::::::::::::::::::::
XP_016 MHYSDPKPKINEDWLCNKCGVQNFKRREKC
10 20 30
240 250 260 270 280 290
pF1KSD FKCGVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKCGVPKSEAEQKLPLGTRLDQQTLPLGGRELSQGLLPLPQPYQAQGVLASQALSQGSEP
40 50 60 70 80 90
300 310 320 330 340 350
pF1KSD SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI
100 110 120 130 140 150
360 370 380 390 400 410
pF1KSD -EAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VEAAQLLQILQALHPPLTIDGKTINVEFAKGSKRDMASNEGSRISAASVASTAIAAAQWA
160 170 180 190 200 210
420 430 440 450 460 470
pF1KSD ISQASQGGEGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISQASQGGEGTWATSEEPPVDYSYYQQDEGYGNSQGTESSLYAHGYLKGTKGPGITGTKG
220 230 240 250 260 270
480 490 500 510 520 530
pF1KSD DPTGAGPEASLEPGADSVSMQAFSRPQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPA
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
XP_016 DPTGAGPEASLEPGADSVSMQAFSRAQPGAAPGIYQQSAEASSSQGTAANSQSYTIMSPA
280 290 300 310 320 330
540 550 560 570 580 590
pF1KSD VLKSELQSPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLKSELQSPTHPSSALPPATSPTAQESYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPN
340 350 360 370 380 390
600 610 620 630 640 650
pF1KSD SQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQYYYNAQSQQYLYWDGERRTYVPALEQSADGHKETGAPSKEGKEKKEKHKTKTAQQIAK
400 410 420 430 440 450
660 670 680 690 700 710
pF1KSD DMERWARSLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DMERWARSLNKQKENFKNSFQPISSLRDDERRESATADAGYAILEKKGALAERQHTSMDL
460 470 480 490 500 510
720 730 740 750 760 770
pF1KSD PKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PKLASDDRPSPPRGLVAAYSGESDSEEEQERGGPEREEKLTDWQKLACLLCRRQFPSKEA
520 530 540 550 560 570
780 790 800 810 820 830
pF1KSD LIRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPPEP
580 590 600 610 620 630
840 850 860 870 880 890
pF1KSD KRRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTR
640 650 660 670 680 690
900 910 920
pF1KSD VRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ
:::::::::::::::::::::::::::::::::::::
XP_016 VRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ
700 710 720
929 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:06:17 2016 done: Thu Nov 3 00:06:18 2016
Total Scan time: 12.370 Total Display time: 0.320
Function used was FASTA [36.3.4 Apr, 2011]