Result of FASTA (omim) for
pF1KSDA0123
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0123, 525 aa
1>>>pF1KSDA0123 525 - 525 aa - 525 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5108+/-0.000343; mu= 17.4195+/- 0.022
mean_var=67.7631+/-13.709, 0's: 0 Z-trim(113.7): 25 B-trim: 2 in 1/53
Lambda= 0.155804
statistics sampled from 23120 (23137) to 23120 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.271), width: 16
Scan time: 6.900
The best scores are: opt bits E(85289)
NP_055975 (OMIM: 213200,613036) mitochondrial-proc ( 525) 3468 788.6 0
XP_005266116 (OMIM: 213200,613036) PREDICTED: mito ( 563) 3121 710.7 3e-204
NP_001269875 (OMIM: 213200,613036) mitochondrial-p ( 425) 2501 571.2 2.1e-162
NP_001269873 (OMIM: 213200,613036) mitochondrial-p ( 394) 2315 529.4 7.5e-150
XP_016870032 (OMIM: 213200,613036) PREDICTED: mito ( 343) 2279 521.3 1.8e-147
XP_011516719 (OMIM: 213200,613036) PREDICTED: mito ( 381) 1932 443.3 6e-124
NP_004270 (OMIM: 603131) mitochondrial-processing ( 489) 423 104.2 9.5e-22
XP_006716244 (OMIM: 603131) PREDICTED: mitochondri ( 506) 423 104.2 9.8e-22
XP_005250774 (OMIM: 603131) PREDICTED: mitochondri ( 508) 423 104.2 9.8e-22
NP_003356 (OMIM: 191328) cytochrome b-c1 complex s ( 480) 415 102.4 3.3e-21
NP_003357 (OMIM: 191329,615160) cytochrome b-c1 co ( 453) 311 79.0 3.4e-14
>>NP_055975 (OMIM: 213200,613036) mitochondrial-processi (525 aa)
initn: 3468 init1: 3468 opt: 3468 Z-score: 4210.0 bits: 788.6 E(85289): 0
Smith-Waterman score: 3468; 100.0% identity (100.0% similar) in 525 aa overlap (1-525:1-525)
10 20 30 40 50 60
pF1KSD MAAVVLAATRLLRGSGSWGCSRLRFGPPAYRRFSSGGAYPNIPLSSPLPGVPKPVFATVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MAAVVLAATRLLRGSGSWGCSRLRFGPPAYRRFSSGGAYPNIPLSSPLPGVPKPVFATVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GQEKFETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GQEKFETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSST
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVALLADVVLQPRLTDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVALLADVVLQPRLTDEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD VEMTRMAVQFELEDLNLRPDPEPLLTEMIHEAAYRENTVGLHRFCPTENVAKINREVLHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VEMTRMAVQFELEDLNLRPDPEPLLTEMIHEAAYRENTVGLHRFCPTENVAKINREVLHS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD YLRNYYTPDRMVLAGVGVEHEHLVDCARKYLLGVQPAWGSAEAVDIDRSVAQYTGGIAKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YLRNYYTPDRMVLAGVGVEHEHLVDCARKYLLGVQPAWGSAEAVDIDRSVAQYTGGIAKL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD ERDMSNVSLGPTPIPELTHIMVGLESCSFLEEDFIPFAVLNMMMGGGGSFSAGGPGKGMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ERDMSNVSLGPTPIPELTHIMVGLESCSFLEEDFIPFAVLNMMMGGGGSFSAGGPGKGMF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGGTVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGGTVD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD TVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVKPEDVKRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVKPEDVKRV
430 440 450 460 470 480
490 500 510 520
pF1KSD ASKMLRGKPAVAALGDLTDLPTYEHIQTALSSKDGRLPRTYRLFR
:::::::::::::::::::::::::::::::::::::::::::::
NP_055 ASKMLRGKPAVAALGDLTDLPTYEHIQTALSSKDGRLPRTYRLFR
490 500 510 520
>>XP_005266116 (OMIM: 213200,613036) PREDICTED: mitochon (563 aa)
initn: 3115 init1: 3115 opt: 3121 Z-score: 3788.0 bits: 710.7 E(85289): 3e-204
Smith-Waterman score: 3121; 97.3% identity (98.2% similar) in 489 aa overlap (1-487:1-488)
10 20 30 40 50 60
pF1KSD MAAVVLAATRLLRGSGSWGCSRLRFGPPAYRRFSSGGAYPNIPLSSPLPGVPKPVFATVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAAVVLAATRLLRGSGSWGCSRLRFGPPAYRRFSSGGAYPNIPLSSPLPGVPKPVFATVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GQEKFETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GQEKFETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSST
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVALLADVVLQPRLTDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVALLADVVLQPRLTDEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD VEMTRMAVQFELEDLNLRPDPEPLLTEMIHEAAYRENTVGLHRFCPTENVAKINREVLHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VEMTRMAVQFELEDLNLRPDPEPLLTEMIHEAAYRENTVGLHRFCPTENVAKINREVLHS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD YLRNYYTPDRMVLAGVGVEHEHLVDCARKYLLGVQPAWGSAEAVDIDRSVAQYTGGIAKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YLRNYYTPDRMVLAGVGVEHEHLVDCARKYLLGVQPAWGSAEAVDIDRSVAQYTGGIAKL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD ERDMSNVSLGPTPIPELTHIMVGLESCSFLEEDFIPFAVLNMMMGGGGSFSAGGPGKGMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ERDMSNVSLGPTPIPELTHIMVGLESCSFLEEDFIPFAVLNMMMGGGGSFSAGGPGKGMF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGGTVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGGTVD
370 380 390 400 410 420
430 440 450 460 470
pF1KSD TVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVK--PEDVK
::::::::::::::::::::::::::::::::::::::::::::::::::. . : .
XP_005 TVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPHELCTLIREYRRGSEGLP
430 440 450 460 470 480
480 490 500 510 520
pF1KSD RVASKMLRGKPAVAALGDLTDLPTYEHIQTALSSKDGRLPRTYRLFR
. :: :::
XP_005 Q-ASARLRGGRLALPQAVVGLWYVHHTQNLGPSPVVLSRGGQGQGRGVADLVSLPGPTMH
490 500 510 520 530
>>NP_001269875 (OMIM: 213200,613036) mitochondrial-proce (425 aa)
initn: 2496 init1: 2496 opt: 2501 Z-score: 3036.7 bits: 571.2 E(85289): 2.1e-162
Smith-Waterman score: 2501; 97.4% identity (98.0% similar) in 391 aa overlap (135-525:35-425)
110 120 130 140 150 160
pF1KSD LSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVV
: :. .::::::::::::::::::
NP_001 TLVELLTFWKNWHFRLLLDLTAKMKFCLRWKSMGVSVTARHQDTTMYAVSADSKGLDTVV
10 20 30 40 50 60
170 180 190 200 210 220
pF1KSD ALLADVVLQPRLTDEEVEMTRMAVQFELEDLNLRPDPEPLLTEMIHEAAYRENTVGLHRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALLADVVLQPRLTDEEVEMTRMAVQFELEDLNLRPDPEPLLTEMIHEAAYRENTVGLHRF
70 80 90 100 110 120
230 240 250 260 270 280
pF1KSD CPTENVAKINREVLHSYLRNYYTPDRMVLAGVGVEHEHLVDCARKYLLGVQPAWGSAEAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CPTENVAKINREVLHSYLRNYYTPDRMVLAGVGVEHEHLVDCARKYLLGVQPAWGSAEAV
130 140 150 160 170 180
290 300 310 320 330 340
pF1KSD DIDRSVAQYTGGIAKLERDMSNVSLGPTPIPELTHIMVGLESCSFLEEDFIPFAVLNMMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIDRSVAQYTGGIAKLERDMSNVSLGPTPIPELTHIMVGLESCSFLEEDFIPFAVLNMMM
190 200 210 220 230 240
350 360 370 380 390 400
pF1KSD GGGGSFSAGGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGGGSFSAGGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREM
250 260 270 280 290 300
410 420 430 440 450 460
pF1KSD VEIITKEFILMGGTVDTVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEIITKEFILMGGTVDTVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPHE
310 320 330 340 350 360
470 480 490 500 510 520
pF1KSD LCTLIRNVKPEDVKRVASKMLRGKPAVAALGDLTDLPTYEHIQTALSSKDGRLPRTYRLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCTLIRNVKPEDVKRVASKMLRGKPAVAALGDLTDLPTYEHIQTALSSKDGRLPRTYRLF
370 380 390 400 410 420
pF1KSD R
:
NP_001 R
>>NP_001269873 (OMIM: 213200,613036) mitochondrial-proce (394 aa)
initn: 2315 init1: 2315 opt: 2315 Z-score: 2811.3 bits: 529.4 E(85289): 7.5e-150
Smith-Waterman score: 2315; 98.3% identity (98.6% similar) in 356 aa overlap (170-525:39-394)
140 150 160 170 180 190
pF1KSD CDCQTSRDTTMYAVSADSKGLDTVVALLADVVLQPRLTDEEVEMTRMAVQFELEDLNLRP
: . : ::::::::::::::::::::::
NP_001 LLTFWKNWHFRLLLDLTAKMKFCLRWKSMGVSVTARHQDEEVEMTRMAVQFELEDLNLRP
10 20 30 40 50 60
200 210 220 230 240 250
pF1KSD DPEPLLTEMIHEAAYRENTVGLHRFCPTENVAKINREVLHSYLRNYYTPDRMVLAGVGVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPEPLLTEMIHEAAYRENTVGLHRFCPTENVAKINREVLHSYLRNYYTPDRMVLAGVGVE
70 80 90 100 110 120
260 270 280 290 300 310
pF1KSD HEHLVDCARKYLLGVQPAWGSAEAVDIDRSVAQYTGGIAKLERDMSNVSLGPTPIPELTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HEHLVDCARKYLLGVQPAWGSAEAVDIDRSVAQYTGGIAKLERDMSNVSLGPTPIPELTH
130 140 150 160 170 180
320 330 340 350 360 370
pF1KSD IMVGLESCSFLEEDFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLYLNVLNRHHWMYNATS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IMVGLESCSFLEEDFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLYLNVLNRHHWMYNATS
190 200 210 220 230 240
380 390 400 410 420 430
pF1KSD YHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGGTVDTVELERAKTQLTSMLMMNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGGTVDTVELERAKTQLTSMLMMNL
250 260 270 280 290 300
440 450 460 470 480 490
pF1KSD ESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVKPEDVKRVASKMLRGKPAVAALGDLTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVKPEDVKRVASKMLRGKPAVAALGDLTD
310 320 330 340 350 360
500 510 520
pF1KSD LPTYEHIQTALSSKDGRLPRTYRLFR
::::::::::::::::::::::::::
NP_001 LPTYEHIQTALSSKDGRLPRTYRLFR
370 380 390
>>XP_016870032 (OMIM: 213200,613036) PREDICTED: mitochon (343 aa)
initn: 2279 init1: 2279 opt: 2279 Z-score: 2768.5 bits: 521.3 E(85289): 1.8e-147
Smith-Waterman score: 2279; 100.0% identity (100.0% similar) in 343 aa overlap (183-525:1-343)
160 170 180 190 200 210
pF1KSD VSADSKGLDTVVALLADVVLQPRLTDEEVEMTRMAVQFELEDLNLRPDPEPLLTEMIHEA
::::::::::::::::::::::::::::::
XP_016 MTRMAVQFELEDLNLRPDPEPLLTEMIHEA
10 20 30
220 230 240 250 260 270
pF1KSD AYRENTVGLHRFCPTENVAKINREVLHSYLRNYYTPDRMVLAGVGVEHEHLVDCARKYLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AYRENTVGLHRFCPTENVAKINREVLHSYLRNYYTPDRMVLAGVGVEHEHLVDCARKYLL
40 50 60 70 80 90
280 290 300 310 320 330
pF1KSD GVQPAWGSAEAVDIDRSVAQYTGGIAKLERDMSNVSLGPTPIPELTHIMVGLESCSFLEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVQPAWGSAEAVDIDRSVAQYTGGIAKLERDMSNVSLGPTPIPELTHIMVGLESCSFLEE
100 110 120 130 140 150
340 350 360 370 380 390
pF1KSD DFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCI
160 170 180 190 200 210
400 410 420 430 440 450
pF1KSD HASADPRQVREMVEIITKEFILMGGTVDTVELERAKTQLTSMLMMNLESRPVIFEDVGRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HASADPRQVREMVEIITKEFILMGGTVDTVELERAKTQLTSMLMMNLESRPVIFEDVGRQ
220 230 240 250 260 270
460 470 480 490 500 510
pF1KSD VLATRSRKLPHELCTLIRNVKPEDVKRVASKMLRGKPAVAALGDLTDLPTYEHIQTALSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLATRSRKLPHELCTLIRNVKPEDVKRVASKMLRGKPAVAALGDLTDLPTYEHIQTALSS
280 290 300 310 320 330
520
pF1KSD KDGRLPRTYRLFR
:::::::::::::
XP_016 KDGRLPRTYRLFR
340
>>XP_011516719 (OMIM: 213200,613036) PREDICTED: mitochon (381 aa)
initn: 1926 init1: 1926 opt: 1932 Z-score: 2346.2 bits: 443.3 E(85289): 6e-124
Smith-Waterman score: 1932; 95.8% identity (97.1% similar) in 307 aa overlap (183-487:1-306)
160 170 180 190 200 210
pF1KSD VSADSKGLDTVVALLADVVLQPRLTDEEVEMTRMAVQFELEDLNLRPDPEPLLTEMIHEA
::::::::::::::::::::::::::::::
XP_011 MTRMAVQFELEDLNLRPDPEPLLTEMIHEA
10 20 30
220 230 240 250 260 270
pF1KSD AYRENTVGLHRFCPTENVAKINREVLHSYLRNYYTPDRMVLAGVGVEHEHLVDCARKYLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AYRENTVGLHRFCPTENVAKINREVLHSYLRNYYTPDRMVLAGVGVEHEHLVDCARKYLL
40 50 60 70 80 90
280 290 300 310 320 330
pF1KSD GVQPAWGSAEAVDIDRSVAQYTGGIAKLERDMSNVSLGPTPIPELTHIMVGLESCSFLEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GVQPAWGSAEAVDIDRSVAQYTGGIAKLERDMSNVSLGPTPIPELTHIMVGLESCSFLEE
100 110 120 130 140 150
340 350 360 370 380 390
pF1KSD DFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCI
160 170 180 190 200 210
400 410 420 430 440 450
pF1KSD HASADPRQVREMVEIITKEFILMGGTVDTVELERAKTQLTSMLMMNLESRPVIFEDVGRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HASADPRQVREMVEIITKEFILMGGTVDTVELERAKTQLTSMLMMNLESRPVIFEDVGRQ
220 230 240 250 260 270
460 470 480 490 500 510
pF1KSD VLATRSRKLPHELCTLIRNVK--PEDVKRVASKMLRGKPAVAALGDLTDLPTYEHIQTAL
::::::::::::::::::. . : . . :: :::
XP_011 VLATRSRKLPHELCTLIREYRRGSEGLPQ-ASARLRGGRLALPQAVVGLWYVHHTQNLGP
280 290 300 310 320
520
pF1KSD SSKDGRLPRTYRLFR
XP_011 SPVVLSRGGQGQGRGVADLVSLPGPTMHLLPPWQVTPPSAPLGGAVTTAQSC
330 340 350 360 370 380
>>NP_004270 (OMIM: 603131) mitochondrial-processing pept (489 aa)
initn: 561 init1: 194 opt: 423 Z-score: 511.4 bits: 104.2 E(85289): 9.5e-22
Smith-Waterman score: 673; 30.6% identity (65.0% similar) in 448 aa overlap (66-510:57-484)
40 50 60 70 80 90
pF1KSD GGAYPNIPLSSPLPGVPKPVFATVDGQEKFETKVTTLDNGLRVASQNKFGQFCTVGILIN
::.:: :..::::::... . ::::. :.
NP_004 IRGAAGRSLYFGENRLRSTQAATQVVLNVPETRVTCLESGLRVASEDSGLSTCTVGLWID
30 40 50 60 70 80
100 110 120 130 140 150
pF1KSD SGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSA
.::::: . .: :::::..::..: . :. .. : .:. :. . :::. :.: ..:
NP_004 AGSRYENEKNNGTAHFLEHMAFKGTKK-RSQLDLELEIENMGAHLNAYTSREQTVYYAKA
90 100 110 120 130 140
160 170 180 190 200 210
pF1KSD DSKGLDTVVALLADVVLQPRLTDEEVEMTRMAVQFELEDLNLRPDPEPLLTEMIHEAAYR
:: : .: .:::.. . : . :.: : .. :..... . . .. ...: .::.
NP_004 FSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVET--NLQEVVFDYLHATAYQ
150 160 170 180 190 200
220 230 240 250 260 270
pF1KSD ENTVGLHRFCPTENVAKINREVLHSYLRNYYTPDRMVLAGVG-VEHEHLVDCARKYLLGV
....: . ::::. .:.:. : .:. ..: :.:::..: : :..:.: : :. .:
NP_004 NTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAGGVSHDELLDLA-KFHFGD
210 220 230 240 250 260
280 290 300 310 320 330
pF1KSD QPAWGSAEAVDIDRSVAQYTGGIAKLERDMSNVSLGPTPIPELTHIMVGLESCSFLEEDF
. ..: . ..::. ... : .: :.:. ...:. .. . :
NP_004 SLCTHKGEIPALPP--CKFTGSEIRVRDD---------KMP-LAHLAIAVEAVGWAHPDT
270 280 290 300 310
340 350 360 370 380 390
pF1KSD IPFAVLNMMMGGGGSFSAGGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHA
: . : : ..:. : :: : .. :.: .. . . .. :.. :: :::: ..
NP_004 ICLMVANTLIGNWDR-SFGG-GMNLSSKLA-QLTCHGNLCHSFQSFNTSYTDTGLWGLYM
320 330 340 350 360
400 410 420 430 440 450
pF1KSD SADPRQVREMVEIITKEFILMGGTVDTVELERAKTQLTSMLMMNLESRPVIFEDVGRQVL
. : .:.... ::.. . .: :. ::.. : . ....:.. : ::.:::.:
NP_004 VCESSTVADMLHVVQKEWMRLCTSVTESEVARARNLLKTNMLLQLDGSTPICEDIGRQML
370 380 390 400 410 420
460 470 480 490 500 510
pF1KSD ATRSRKLP-HELCTLIRNVKPEDVKRVASKMLRGK-PAVAALGDLTDLPTYEHIQTALSS
.:..: :: . : :. : ...: .:.. .. ::.::.: . .:: ...:.. .
NP_004 C-YNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAIAAVGPIKQLPDFKQIRSNMCW
430 440 450 460 470 480
520
pF1KSD KDGRLPRTYRLFR
NP_004 LRD
>>XP_006716244 (OMIM: 603131) PREDICTED: mitochondrial-p (506 aa)
initn: 507 init1: 194 opt: 423 Z-score: 511.2 bits: 104.2 E(85289): 9.8e-22
Smith-Waterman score: 645; 30.3% identity (63.0% similar) in 459 aa overlap (66-521:57-495)
40 50 60 70 80 90
pF1KSD GGAYPNIPLSSPLPGVPKPVFATVDGQEKFETKVTTLDNGLRVASQNKFGQFCTVGILIN
::.:: :..::::::... . ::::. :.
XP_006 IRGAAGRSLYFGENRLRSTQAATQVVLNVPETRVTCLESGLRVASEDSGLSTCTVGLWID
30 40 50 60 70 80
100 110 120 130 140 150
pF1KSD SGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSA
.::::: . .: :::::..::..: . :. .. : .:. :. . :::. :.: ..:
XP_006 AGSRYENEKNNGTAHFLEHMAFKGTKK-RSQLDLELEIENMGAHLNAYTSREQTVYYAKA
90 100 110 120 130 140
160 170 180 190 200 210
pF1KSD DSKGLDTVVALLADVVLQPRLTDEEVEMTRMAVQFELEDLNLRPDPEPLLTEMIHEAAYR
:: : .: .:::.. . : . :.: : .. :..... . . .. ...: .::.
XP_006 FSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVE--TNLQEVVFDYLHATAYQ
150 160 170 180 190 200
220 230 240 250 260 270
pF1KSD ENTVGLHRFCPTENVAKINREVLHSYLRNYYTPDRMVLAGVG-VEHEHLVDCARKYLLGV
....: . ::::. .:.:. : .:. ..: :.:::..: : :..:.: : :. .:
XP_006 NTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAGGVSHDELLDLA-KFHFGD
210 220 230 240 250 260
280 290 300 310 320 330
pF1KSD QPAWGSAEAVDIDRSVAQYTGGIAKLERDMSNVSLGPTPIPELTHIMVGLESCSFLEEDF
. ..: . ..::. ... : .: :.:. ...:. .. . :
XP_006 SLCTHKGEIPALPPC--KFTGSEIRVRDD---------KMP-LAHLAIAVEAVGWAHPDT
270 280 290 300 310
340 350 360 370 380 390
pF1KSD IPFAVLNMMMGGGGSFSAGGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHA
: . : : ..:. : :: : .. :.: .. . . .. :.. :: :::: ..
XP_006 ICLMVANTLIGNWDR-SFGG-GMNLSSKLA-QLTCHGNLCHSFQSFNTSYTDTGLWGLYM
320 330 340 350 360
400 410 420 430 440 450
pF1KSD SADPRQVREMVEIITKEFILMGGTVDTVELERAKTQLTSMLMMNLESRPVIFEDVGRQVL
. : .:.... ::.. . .: :. ::.. : . ....:.. : ::.:::.:
XP_006 VCESSTVADMLHVVQKEWMRLCTSVTESEVARARNLLKTNMLLQLDGSTPICEDIGRQML
370 380 390 400 410 420
460 470 480 490 500 510
pF1KSD ATRSRKLP-HELCTLIRNVKPEDVKRVASKMLRGK-PAVAALGDLTDLPTYEHIQTALSS
.:..: :: . : :. : ...: .:.. .. ::.::.: .: . : :
XP_006 C-YNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAIAAVGYNHRSELHEWKWNKLFS
430 440 450 460 470 480
520
pF1KSD KDGRLPRTYRLFR
: . .:
XP_006 KRQTISYSYVNILLPQPQPQ
490 500
>>XP_005250774 (OMIM: 603131) PREDICTED: mitochondrial-p (508 aa)
initn: 507 init1: 194 opt: 423 Z-score: 511.2 bits: 104.2 E(85289): 9.8e-22
Smith-Waterman score: 645; 30.3% identity (63.0% similar) in 459 aa overlap (66-521:57-495)
40 50 60 70 80 90
pF1KSD GGAYPNIPLSSPLPGVPKPVFATVDGQEKFETKVTTLDNGLRVASQNKFGQFCTVGILIN
::.:: :..::::::... . ::::. :.
XP_005 IRGAAGRSLYFGENRLRSTQAATQVVLNVPETRVTCLESGLRVASEDSGLSTCTVGLWID
30 40 50 60 70 80
100 110 120 130 140 150
pF1KSD SGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSA
.::::: . .: :::::..::..: . :. .. : .:. :. . :::. :.: ..:
XP_005 AGSRYENEKNNGTAHFLEHMAFKGTKK-RSQLDLELEIENMGAHLNAYTSREQTVYYAKA
90 100 110 120 130 140
160 170 180 190 200 210
pF1KSD DSKGLDTVVALLADVVLQPRLTDEEVEMTRMAVQFELEDLNLRPDPEPLLTEMIHEAAYR
:: : .: .:::.. . : . :.: : .. :..... . . .. ...: .::.
XP_005 FSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVE--TNLQEVVFDYLHATAYQ
150 160 170 180 190 200
220 230 240 250 260 270
pF1KSD ENTVGLHRFCPTENVAKINREVLHSYLRNYYTPDRMVLAGVG-VEHEHLVDCARKYLLGV
....: . ::::. .:.:. : .:. ..: :.:::..: : :..:.: : :. .:
XP_005 NTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAGGVSHDELLDLA-KFHFGD
210 220 230 240 250 260
280 290 300 310 320 330
pF1KSD QPAWGSAEAVDIDRSVAQYTGGIAKLERDMSNVSLGPTPIPELTHIMVGLESCSFLEEDF
. ..: . ..::. ... : .: :.:. ...:. .. . :
XP_005 SLCTHKGEIPALPPC--KFTGSEIRVRDD---------KMP-LAHLAIAVEAVGWAHPDT
270 280 290 300 310
340 350 360 370 380 390
pF1KSD IPFAVLNMMMGGGGSFSAGGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHA
: . : : ..:. : :: : .. :.: .. . . .. :.. :: :::: ..
XP_005 ICLMVANTLIGNWDR-SFGG-GMNLSSKLA-QLTCHGNLCHSFQSFNTSYTDTGLWGLYM
320 330 340 350 360
400 410 420 430 440 450
pF1KSD SADPRQVREMVEIITKEFILMGGTVDTVELERAKTQLTSMLMMNLESRPVIFEDVGRQVL
. : .:.... ::.. . .: :. ::.. : . ....:.. : ::.:::.:
XP_005 VCESSTVADMLHVVQKEWMRLCTSVTESEVARARNLLKTNMLLQLDGSTPICEDIGRQML
370 380 390 400 410 420
460 470 480 490 500 510
pF1KSD ATRSRKLP-HELCTLIRNVKPEDVKRVASKMLRGK-PAVAALGDLTDLPTYEHIQTALSS
.:..: :: . : :. : ...: .:.. .. ::.::.: .: . : :
XP_005 C-YNRRIPIPELEARIDAVNAETIREVCTKYIYNRSPAIAAVGYNHRSELHEWKWNKLFS
430 440 450 460 470 480
520
pF1KSD KDGRLPRTYRLFR
: . .:
XP_005 KRQTISYSYVNILLPQPQPQYV
490 500
>>NP_003356 (OMIM: 191328) cytochrome b-c1 complex subun (480 aa)
initn: 399 init1: 183 opt: 415 Z-score: 501.8 bits: 102.4 E(85289): 3.3e-21
Smith-Waterman score: 597; 31.0% identity (60.6% similar) in 452 aa overlap (66-510:47-475)
40 50 60 70 80 90
pF1KSD GGAYPNIPLSSPLPGVPKPVFATVDGQEKFETKVTTLDNGLRVASQNKFGQFCTVGILIN
::.:. :::::::::... ::::. :.
NP_003 LLRARRSPALLRTPALRSTATFAQALQFVPETQVSLLDNGLRVASEQSSQPTCTVGVWID
20 30 40 50 60 70
100 110 120 130 140 150
pF1KSD SGSRYEAKYLSGIAHFLEKLAFSSTA-RFDSKDEILLTLEKHGGICDCQTSRDTTMYAVS
:::.:.. .: ..:::.:::..: : : : .:. :. . ..:. : : ..
NP_003 VGSRFETEKNNGAGYFLEHLAFKGTKNRPGSALE--KEVESMGAHLNAYSTREHTAYYIK
80 90 100 110 120 130
160 170 180 190 200 210
pF1KSD ADSKGLDTVVALLADVVLQPRLTDEEVEMTRMAVQFELE--DLNLRPDPEPLLTEMIHEA
: :: : .: ::.:.: . : : ..: : .. :.. : ..: .. ...: .
NP_003 ALSKDLPKAVELLGDIVQNCSLEDSQIEKERDVILREMQENDASMRD----VVFNYLHAT
140 150 160 170 180 190
220 230 240 250 260 270
pF1KSD AYRENTVGLHRFCPTENVAKINREVLHSYLRNYYTPDRMVLAGVG-VEHEHLVDCARKYL
:.. . .. :.::: :..: : :: ..: :::::..: :::..:.: :.:.:
NP_003 AFQGTPLAQAVEGPSENVRKLSRADLTEYLSTHYKAPRMVLAAAGGVEHQQLLDLAQKHL
200 210 220 230 240 250
280 290 300 310 320 330
pF1KSD LGVQPAWGSAEAVDIDRSVAQYTGGIAKLERDMSNVSLGPTPIPELTHIMVGLESCSFLE
:. : : :: . . ..::. . .:: .: ..:. ...:. ..
NP_003 GGI-P-WTYAEDAVPTLTPCRFTGSEIR-HRD--------DALP-FAHVAIAVEGPGWAS
260 270 280 290
340 350 360 370 380 390
pF1KSD EDFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLYLN-VLNRHHWMYNATSYHHSYEDTGLL
: . . : : ..: . :: : . : : . : :. ... : : .::::
NP_003 PDNVALQVANAIIGHYDC-TYGG-GVHLSSPLASGAVANKLCQSFQTFSI--CYAETGLL
300 310 320 330 340 350
400 410 420 430 440 450
pF1KSD CIHASADPRQVREMVEIITKEFILMGGTVDTVELERAKTQLTSMLMMNLESRPVIFEDVG
: : .. .:. .. ... . .. :. :.:. : . :. .:.. . ::.:
NP_003 GAHFVCDRMKIDDMMFVLQGQWMRLCTSATESEVARGKNILRNALVSHLDGTTPVCEDIG
360 370 380 390 400 410
460 470 480 490 500
pF1KSD RQVLATRSRKLP-HELCTLIRNVKPEDVKRVASKMLRGK-PAVAALGDLTDLPTYEHIQT
:..: : .:..: : . : .: :... ::.. . ::::. : . .:: :..:..
NP_003 RSLL-TYGRRIPLAEWESRIAEVDASVVREICSKYIYDQCPAVAGYGPIEQLPDYNRIRS
420 430 440 450 460 470
510 520
pF1KSD ALSSKDGRLPRTYRLFR
..
NP_003 GMFWLRF
480
525 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:06:57 2016 done: Thu Nov 3 00:06:58 2016
Total Scan time: 6.900 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]