FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0150, 948 aa
  1>>>pF1KSDA0150 948 - 948 aa - 948 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0979+/-0.000887; mu= 1.7685+/- 0.054
 mean_var=280.4997+/-55.617, 0's: 0 Z-trim(115.4): 12  B-trim: 0 in 0/54
 Lambda= 0.076579
 statistics sampled from 16000 (16008) to 16000 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.492), width:  16
 Scan time:  3.760

The best scores are:                                      opt bits E(32554)
CCDS6402.1 ZC3H3 gene_id:23144|Hs108|chr8          ( 948) 6448 726.2 7.4e-209


>>CCDS6402.1 ZC3H3 gene_id:23144|Hs108|chr8               (948 aa)
 initn: 6448 init1: 6448 opt: 6448  Z-score: 3863.1  bits: 726.2 E(32554): 7.4e-209
Smith-Waterman score: 6448; 99.7% identity (100.0% similar) in 948 aa overlap (1-948:1-948)

               10        20        30        40        50        60
pF1KSD MEEKEILRRQIRLLQGLIDDYKTLHGNAPAPGTPAASGWQPPTYHSGRAFSARYPRPSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MEEKEILRRQIRLLQGLIDDYKTLHGNAPAPGTPAASGWQPPTYHSGRAFSARYPRPSRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD GYSSHHGPSWRKKYSLVNRPPGPSDPPADHAVRPLHGARGGQPPVPQQHVLERQVQLSQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GYSSHHGPSWRKKYSLVNRPPGPSDPPADHAVRPLHGARGGQPPVPQQHVLERQVQLSQG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD QNVVIKVKPPSKSGSASASGAQRGSLEEFEDTPWSDQRPREGEGEPPRGQLQPSRPTRAR
       ::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
CCDS64 QNVVIKVKPPSKSGSASASGAQRGSLEEFEETPWSDQRPREGEGEPPRGQLQPSRPTRAR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GTCSVEDPLLVCQKEPGKPRMVKSVGSVGDSPREPRRTVSESVIAVKASFPSSALPPRTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GTCSVEDPLLVCQKEPGKPRMVKSVGSVGDSPREPRRTVSESVIAVKASFPSSALPPRTG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD VALGRKLGSHSVASCAPQLLGDRRVDAGHTDQPVPSGSVGGPARPASGPRQAREASLVVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VALGRKLGSHSVASCAPQLLGDRRVDAGHTDQPVPSGSVGGPARPASGPRQAREASLVVT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD CRTNKFRKNNYKWVAASSKSPRVARRALSPRVAAENVCKASAGMANKVEKPQLIADPEPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 CRTNKFRKNNYKWVAASSKSPRVARRALSPRVAAENVCKASAGMANKVEKPQLIADPEPK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD PRKPATSSKPGSAPSKYKWKASSPSASSSSSFRWQSEAGSKDHASQLSPVLSRSPSGDRP
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS64 PRKPATSSKPGSAPSKYKWKASSPSASSSSSFRWQSEASSKDHASQLSPVLSRSPSGDRP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD AVGHSGLKPLSGETPLSAYKVKSRTKIIRRRGSTSLPGDKKSGTSPAATAKSHLSLRRRQ
       :::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS64 AVGHSGLKPLSGETPLSAYKVKSRTKIIRRRSSTSLPGDKKSGTSPAATAKSHLSLRRRQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD ALRGKSSPVLKKTPNKGLVQVTTHRLCRLPPSRAHLPTKEASSLHAVRTAPTSKVIKTRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ALRGKSSPVLKKTPNKGLVQVTTHRLCRLPPSRAHLPTKEASSLHAVRTAPTSKVIKTRY
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD RIVKKTPASPLSAPPFPLSLPSWRARRLSLSRSLVLNRLRPVASGGGKAQPGSPWWRSKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RIVKKTPASPLSAPPFPLSLPSWRARRLSLSRSLVLNRLRPVASGGGKAQPGSPWWRSKG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD YRCIGGVLYKVSANKLSKTSGQPSDAGSRPLLRTGRLDPAGSCSRSLASRAVQRSLAIIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 YRCIGGVLYKVSANKLSKTSGQPSDAGSRPLLRTGRLDPAGSCSRSLASRAVQRSLAIIR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD QARQRREKRKEYCMYYNRFGRCNRGERCPYIHDPEKVAVCTRFVRGTCKKTDGTCPFSHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 QARQRREKRKEYCMYYNRFGRCNRGERCPYIHDPEKVAVCTRFVRGTCKKTDGTCPFSHH
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD VSKEKMPVCSYFLKGICSNSNCPYSHVYVSRKAEVCSDFLKGYCPLGAKCKKKHTLLCPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VSKEKMPVCSYFLKGICSNSNCPYSHVYVSRKAEVCSDFLKGYCPLGAKCKKKHTLLCPD
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD FARRGACPRGAQCQLLHRTQKRHSRRAATSPAPGPSDATARSRVSASHGPRKPSASQRPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 FARRGACPRGAQCQLLHRTQKRHSRRAATSPAPGPSDATARSRVSASHGPRKPSASQRPT
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD RQTPSSAALTAAAVAAPPHCPGGSASPSSSKASSSSSSSSSPPASLDHEAPSLQEAALAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RQTPSSAALTAAAVAAPPHCPGGSASPSSSKASSSSSSSSSPPASLDHEAPSLQEAALAA
              850       860       870       880       890       900

              910       920       930       940        
pF1KSD ACSNRLCKLPSFISLQSSPSPGAQPRVRAPRAPLTKDSGKPLHIKPRL
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ACSNRLCKLPSFISLQSSPSPGAQPRVRAPRAPLTKDSGKPLHIKPRL
              910       920       930       940        




948 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:16:47 2016 done: Thu Nov  3 00:16:48 2016
 Total Scan time:  3.760 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]