FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0153, 644 aa
  1>>>pF1KSDA0153 644 - 644 aa - 644 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4335+/-0.000735; mu= 19.3345+/- 0.044
 mean_var=70.3516+/-14.036, 0's: 0 Z-trim(109.0): 14  B-trim: 115 in 2/49
 Lambda= 0.152910
 statistics sampled from 10593 (10607) to 10593 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.326), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS14047.1 TTLL12 gene_id:23170|Hs108|chr22       ( 644) 4493 1000.3       0
CCDS5301.1 TTLL2 gene_id:83887|Hs108|chr6          ( 592)  305 76.4 1.3e-13


>>CCDS14047.1 TTLL12 gene_id:23170|Hs108|chr22            (644 aa)
 initn: 4493 init1: 4493 opt: 4493  Z-score: 5350.5  bits: 1000.3 E(32554):    0
Smith-Waterman score: 4493; 100.0% identity (100.0% similar) in 644 aa overlap (1-644:1-644)

               10        20        30        40        50        60
pF1KSD MEAERGPERRPAERSSPGQTPEEGAQALAEFAALHGPALRASGVPERYWGRLLHKLEHEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MEAERGPERRPAERSSPGQTPEEGAQALAEFAALHGPALRASGVPERYWGRLLHKLEHEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FDAGEVFGIMQVEEVEEEEDEAAREVRKQQPNPGNELCYKVIVTRESGLQAAHPNSIFLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FDAGEVFGIMQVEEVEEEEDEAAREVRKQQPNPGNELCYKVIVTRESGLQAAHPNSIFLI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD DHAWTCRVEHARQQLQQVPGLLHRMANLMGIEFHGELPSTEAVALVLEEMWKFNQTYQLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DHAWTCRVEHARQQLQQVPGLLHRMANLMGIEFHGELPSTEAVALVLEEMWKFNQTYQLA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD HGTAEEKMPVWYIMDEFGSRIQHADVPSFATAPFFYMPQQVAYTLLWPLRDLDTGEEVTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HGTAEEKMPVWYIMDEFGSRIQHADVPSFATAPFFYMPQQVAYTLLWPLRDLDTGEEVTR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD DFAYGETDPLIRKCMLLPWAPTDMLDLSSCTPEPPAEHYQAILEENKEKLPLDINPVVHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DFAYGETDPLIRKCMLLPWAPTDMLDLSSCTPEPPAEHYQAILEENKEKLPLDINPVVHP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD HGHIFKVYTDVQQVASSLTHPRFTLTQSEADADILFNFSHFKDYRKLSQERPGVLLNQFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HGHIFKVYTDVQQVASSLTHPRFTLTQSEADADILFNFSHFKDYRKLSQERPGVLLNQFP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD CENLLTVKDCLASIARRAGGPEGPPWLPRTFNLRTELPQFVSYFQQRERWGEDNHWICKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CENLLTVKDCLASIARRAGGPEGPPWLPRTFNLRTELPQFVSYFQQRERWGEDNHWICKP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD WNLARSLDTHVTKSLHSIIRHRESTPKVVSKYIESPVLFLREDVGKVKFDIRYIVLLRSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 WNLARSLDTHVTKSLHSIIRHRESTPKVVSKYIESPVLFLREDVGKVKFDIRYIVLLRSV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD RPLRLFVYDVFWLRFSNRAFALNDLDDYEKHFTVMNYDPDVVLKQVHCEEFIPEFEKQYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RPLRLFVYDVFWLRFSNRAFALNDLDDYEKHFTVMNYDPDVVLKQVHCEEFIPEFEKQYP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD EFPWTDVQAEIFRAFTELFQVACAKPPPLGLCDYPSSRAMYAVDLMLKWDNGPDGRRVMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EFPWTDVQAEIFRAFTELFQVACAKPPPLGLCDYPSSRAMYAVDLMLKWDNGPDGRRVMQ
              550       560       570       580       590       600

              610       620       630       640    
pF1KSD PQILEVNFNPDCERACRYHPTFFNDVFSTLFLDQPGGCHVTCLV
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PQILEVNFNPDCERACRYHPTFFNDVFSTLFLDQPGGCHVTCLV
              610       620       630       640    

>>CCDS5301.1 TTLL2 gene_id:83887|Hs108|chr6               (592 aa)
 initn: 151 init1:  61 opt: 305  Z-score: 358.0  bits: 76.4 E(32554): 1.3e-13
Smith-Waterman score: 310; 25.5% identity (54.8% similar) in 325 aa overlap (327-633:116-418)

        300       310       320       330       340       350      
pF1KSD VVHPHGHIFKVYTDVQQVASSLTHPRFTLTQSEADADILFNFSHFKDYRKLSQERPGVLL
                                     :.  : .. .  : :. . . .. .:   :
CCDS53 PLVFRVDETTPAVVQSVLLERGWNKFDKQEQNAEDWNLYWRTSSFR-MTEHNSVKPWQQL
          90       100       110       120       130        140    

        360       370          380       390       400        410  
pF1KSD NQFPCENLLTVKDCLASI---ARRAGGPEGPPWLPRTFNLRTELPQFVS-YFQQRERWG-
       :. :  . :: :::::.     ::  :     ..: :: . ..  .::. :::.:.  : 
CCDS53 NHHPGTTKLTRKDCLAKHLKHMRRMYGTSLYQFIPLTFVMPNDYTKFVAEYFQERQMLGT
          150       160       170       180       190       200    

             420       430       440       450       460       470 
pF1KSD EDNHWICKPWNLARSLDTHVTKSLHSIIRHRESTPKVVSKYIESPVLFLREDVGKVKFDI
       . ..::::: .:.:.    . ......:    .   .:.::: .:.:     .:. : :.
CCDS53 KHSYWICKPAELSRGRGILIFSDFKDFIF---DDMYIVQKYISNPLL-----IGRYKCDL
          210       220       230          240            250      

             480       490       500       510       520           
pF1KSD RYIVLLRSVRPLRLFVYDVFWLRFSNRAFALNDLDDYEKHFTVMNYDPDVV----LKQV-
       :  : . . .:: ..::.   .::... : :..:..   :.:  . . . .    .:.: 
CCDS53 RIYVCVTGFKPLTIYVYQEGLVRFATEKFDLSNLQNNYAHLTNSSINKSGASYEKIKEVI
        260       270       280       290       300       310      

          530       540         550       560       570       580  
pF1KSD -H-CEEFIPEFEKQYPEFPWTDV--QAEIFRAFTELFQVACAKPPPLGLCDYPSSRAMYA
        : :.  . .: .    .   :.    .: :    :  .: :   :..   .     ...
CCDS53 GHGCKWTLSRFFSYLRSWDVDDLLLWKKIHRMVI-LTILAIAPSVPFAANCF----ELFG
        320       330       340       350        360           370 

            590       600       610           620       630        
pF1KSD VDLMLKWDNGPDGRRVMQPQILEVNFNP----DCERACRYHPTFFNDVFSTLFLDQPGGC
        :...  ::       ..: .::::..:    ::      .  . .:... ..:.     
CCDS53 FDILID-DN-------LKPWLLEVNYSPALTLDCSTDVLVKRKLVHDIIDLIYLNGLRNE
                     380       390       400       410       420   

      640                                                          
pF1KSD HVTCLV                                                      
                                                                   
CCDS53 GREASNATHGNSNIDAAKSDRGGLDAPDCLPYDSLSFTSRMYNEDDSVVEKAVSVRPEAA
           430       440       450       460       470       480   




644 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:18:06 2016 done: Thu Nov  3 00:18:06 2016
 Total Scan time:  2.260 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]