Result of FASTA (ccds) for
pF1KSDA0161
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0161, 292 aa
1>>>pF1KSDA0161 292 - 292 aa - 292 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6490+/-0.000924; mu= 16.1592+/- 0.056
mean_var=122.7700+/-24.471, 0's: 0 Z-trim(110.4): 34 B-trim: 0 in 0/51
Lambda= 0.115752
statistics sampled from 11588 (11615) to 11588 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.357), width: 16
Scan time: 2.120
The best scores are: opt bits E(32554)
CCDS1657.1 RNF144A gene_id:9781|Hs108|chr2 ( 292) 2137 367.5 6.5e-102
CCDS34345.1 RNF144B gene_id:255488|Hs108|chr6 ( 303) 1227 215.6 3.7e-56
CCDS44107.1 RNF19B gene_id:127544|Hs108|chr1 ( 587) 450 86.1 6.5e-17
CCDS72754.1 RNF19B gene_id:127544|Hs108|chr1 ( 731) 450 86.3 7.5e-17
CCDS10244.1 ARIH1 gene_id:25820|Hs108|chr15 ( 557) 389 75.9 7.4e-14
CCDS2780.1 ARIH2 gene_id:10425|Hs108|chr3 ( 493) 380 74.4 1.9e-13
CCDS69191.1 RNF217 gene_id:154214|Hs108|chr6 ( 542) 345 68.6 1.2e-11
CCDS372.2 RNF19B gene_id:127544|Hs108|chr1 ( 732) 338 67.5 3.2e-11
CCDS34595.1 RNF216 gene_id:54476|Hs108|chr7 ( 866) 331 66.5 8.1e-11
CCDS34594.1 RNF216 gene_id:54476|Hs108|chr7 ( 923) 331 66.5 8.4e-11
CCDS6286.1 RNF19A gene_id:25897|Hs108|chr8 ( 838) 330 66.3 8.9e-11
>>CCDS1657.1 RNF144A gene_id:9781|Hs108|chr2 (292 aa)
initn: 2137 init1: 2137 opt: 2137 Z-score: 1943.2 bits: 367.5 E(32554): 6.5e-102
Smith-Waterman score: 2137; 99.7% identity (100.0% similar) in 292 aa overlap (1-292:1-292)
10 20 30 40 50 60
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLE
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MTTTRYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD TAISCPDAACPKQGHLQENEIECMVAAEIMQRYKKLQFEREVLFDPCRTWCPASTCQAVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 TAISCPDAACPKQGHLQENEIECMVAAEIMQRYKKLQFEREVLFDPCRTWCPASTCQAVC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD QLQDVGLQTPQPVQCKACRMEFCSTCKASWHPGQGCPETMPITFLPGETSAAFKMEEDDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 QLQDVGLQTPQPVQCKACRMEFCSTCKASWHPGQGCPETMPITFLPGETSAAFKMEEDDA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD PIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLDDDFLLIHYDKGPCRNKLGHSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 PIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLDDDFLLIHYDKGPCRNKLGHSR
190 200 210 220 230 240
250 260 270 280 290
pF1KSD ASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCKCKCSKGDDDPLPT
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 ASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCKCKCSKGDDDPLPT
250 260 270 280 290
>>CCDS34345.1 RNF144B gene_id:255488|Hs108|chr6 (303 aa)
initn: 1232 init1: 620 opt: 1227 Z-score: 1121.7 bits: 215.6 E(32554): 3.7e-56
Smith-Waterman score: 1227; 55.6% identity (77.3% similar) in 295 aa overlap (1-292:12-303)
10 20 30 40
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQ
::. : ::: ::..::::: : ...:::. .::::::: ::::
CCDS34 MGSAGRLHYLAMTAENPTPG-DLAPAPLITCKLCLCEQSLDKMTTLQECQCIFCTACLKQ
10 20 30 40 50
50 60 70 80 90 100
pF1KSD YVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYKKLQFEREVLFDPCRT
:..: :.:: . :.::: .: ..: ::: :: :.: .. .: :..:.::::: .:: ::
CCDS34 YMQLAIREGCGSPITCPDMVCLNHGTLQEAEIACLVPVDQFQLYQRLKFEREVHLDPYRT
60 70 80 90 100 110
110 120 130 140 150 160
pF1KSD WCPASTCQAVCQLQDVGLQTPQPVQCKACRMEFCSTCKASWHPGQGCPETMPITFLPGET
:::.. ::.:: . . : :.: .:...::: :: .:: .: ...::. :: :
CCDS34 WCPVADCQTVCPVASSDPGQPVLVECPSCHLKFCSCCKDAWHAEVSCRDSQPIV-LPTEH
120 130 140 150 160 170
170 180 190 200 210 220
pF1KSD SAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLDDDFLLIHYDK
: : . . ::::.:: :.:::::.:::::::::::::.::::::..::.:..: ::::
CCDS34 RALFGTDAE-APIKQCPVCRVYIERNEGCAQMMCKNCKHTFCWYCLQNLDNDIFLRHYDK
180 190 200 210 220 230
230 240 250 260 270 280
pF1KSD GPCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCKCKCSKGDD--
::::::::::::::.:.:::::::..:.:.. ::.::.::::.: ..:: :: .:
CCDS34 GPCRNKLGHSRASVMWNRTQVVGILVGLGIIALVTSPLLLLASPCIICCVCKSCRGKKKK
240 250 260 270 280 290
290
pF1KSD -DPLPT
:: :
CCDS34 HDPSTT
300
>>CCDS44107.1 RNF19B gene_id:127544|Hs108|chr1 (587 aa)
initn: 325 init1: 141 opt: 450 Z-score: 417.1 bits: 86.1 E(32554): 6.5e-17
Smith-Waterman score: 450; 30.4% identity (57.9% similar) in 273 aa overlap (18-273:117-376)
10 20 30 40
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTLCL
: : ::: . : :. . .: : ::
CCDS44 EAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECPLCLVRLPPERAPRLLSCPHRSCRDCL
90 100 110 120 130 140
50 60 70 80 90 100
pF1KSD KQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVA-AEIMQRYKKLQFEREVLFDP
..:..: :.:. .. ::::. : .. :. ..:. ..: .:..:......: . ::
CCDS44 RHYLRLEISES-RVPISCPE--CSER--LNPHDIRLLLADPPLMHKYEEFMLRRYLASDP
150 160 170 180 190 200
110 120 130 140 150
pF1KSD -CRTWCPASTC-QAVCQLQDVGLQTPQPVQCK--ACRMEFCSTCKASWHPGQGCP-----
:: :::: : :: : . . :. .:. ::: :: :::.: :
CCDS44 DCR-WCPAPDCGYAVIAY---GCASCPKLTCEREGCQTEFCYHCKQIWHPNQTCDMARQQ
210 220 230 240 250
160 170 180 190 200 210
pF1KSD ETMPITFLPGETSA-AFKMEEDDAPIKRCPKCKVYIER--DEGCAQMMCKNCKHAFCWYC
... . .::. .. .: :: ::.:..:: . : .: .: : : ::: :
CCDS44 RAQTLRVRTKHTSGLSYGQESGPDDIKPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWLC
260 270 280 290 300 310
220 230 240 250 260 270
pF1KSD LESLDDDFLLIHY-DKGPCR--NKLGHSRAS-VIWHRTQVVGIFAGFGLLLLVASPFLLL
.. ..: .:: . . : .: :: . ..:. ..: .:..:. .: : ...
CCDS44 MKEISD----LHYLSPSGCTFWGKKPWSRKKKILWQLGTLIGAPVGISLIAGIAIPAMVI
320 330 340 350 360 370
280 290
pF1KSD ATPFVLCCKCKCSKGDDDPLPT
. :
CCDS44 GIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVSVGIGVPIMLAYVYG
380 390 400 410 420 430
>>CCDS72754.1 RNF19B gene_id:127544|Hs108|chr1 (731 aa)
initn: 325 init1: 141 opt: 450 Z-score: 416.0 bits: 86.3 E(32554): 7.5e-17
Smith-Waterman score: 450; 30.4% identity (57.9% similar) in 273 aa overlap (18-273:117-376)
10 20 30 40
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTLCL
: : ::: . : :. . .: : ::
CCDS72 EAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECPLCLVRLPPERAPRLLSCPHRSCRDCL
90 100 110 120 130 140
50 60 70 80 90 100
pF1KSD KQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVA-AEIMQRYKKLQFEREVLFDP
..:..: :.:. .. ::::. : .. :. ..:. ..: .:..:......: . ::
CCDS72 RHYLRLEISES-RVPISCPE--CSER--LNPHDIRLLLADPPLMHKYEEFMLRRYLASDP
150 160 170 180 190 200
110 120 130 140 150
pF1KSD -CRTWCPASTC-QAVCQLQDVGLQTPQPVQCK--ACRMEFCSTCKASWHPGQGCP-----
:: :::: : :: : . . :. .:. ::: :: :::.: :
CCDS72 DCR-WCPAPDCGYAVIAY---GCASCPKLTCEREGCQTEFCYHCKQIWHPNQTCDMARQQ
210 220 230 240 250
160 170 180 190 200 210
pF1KSD ETMPITFLPGETSA-AFKMEEDDAPIKRCPKCKVYIER--DEGCAQMMCKNCKHAFCWYC
... . .::. .. .: :: ::.:..:: . : .: .: : : ::: :
CCDS72 RAQTLRVRTKHTSGLSYGQESGPDDIKPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWLC
260 270 280 290 300 310
220 230 240 250 260 270
pF1KSD LESLDDDFLLIHY-DKGPCR--NKLGHSRAS-VIWHRTQVVGIFAGFGLLLLVASPFLLL
.. ..: .:: . . : .: :: . ..:. ..: .:..:. .: : ...
CCDS72 MKEISD----LHYLSPSGCTFWGKKPWSRKKKILWQLGTLIGAPVGISLIAGIAIPAMVI
320 330 340 350 360 370
280 290
pF1KSD ATPFVLCCKCKCSKGDDDPLPT
. :
CCDS72 GIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVSVGIGVPIMLAYVYG
380 390 400 410 420 430
>>CCDS10244.1 ARIH1 gene_id:25820|Hs108|chr15 (557 aa)
initn: 303 init1: 116 opt: 389 Z-score: 362.3 bits: 75.9 E(32554): 7.4e-14
Smith-Waterman score: 389; 31.5% identity (55.2% similar) in 203 aa overlap (20-215:186-376)
10 20 30 40
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQ
:..: .:: .: . .: :: : ..
CCDS10 KLFAECHVINPSKKSRTRQMNTRSSAQDMPCQICYLNYPNSYFTGL-ECGHKFCMQCWSE
160 170 180 190 200 210
50 60 70 80 90 100
pF1KSD YVEL-LIKEGLETAISCPDAACPKQGHLQENEIECMVA-AEIMQRYKKLQFEREVLFDPC
:. ...::. .:::: .: ...: . ... ... .:..: . : .
CCDS10 YLTTKIMEEGMGQTISCPAHGCDIL--VDDNTVMRLITDSKVKLKYQHLITNSFVECNRL
220 230 240 250 260 270
110 120 130 140 150 160
pF1KSD RTWCPASTCQAVCQLQDVGLQTPQPVQCKACRMEFCSTCKASWHPGQGCP---ETMPITF
:::: :. : ..: .::.:: : .:: .: .:: : . .
CCDS10 LKWCPAPDCHHVVKVQ---YPDAKPVRCK-CGRQFCFNCGENWHDPVKCKWLKKWIKKCD
280 290 300 310 320
170 180 190 200 210 220
pF1KSD LPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKN--CKHAFCWYCLESLDDDF
.::: . : :.::::.: ::.: :: .:.:.: :: ::: ::
CCDS10 DDSETSNWIA-----ANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG
330 340 350 360 370 380
230 240 250 260 270 280
pF1KSD LLIHYDKGPCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCKCKC
CCDS10 SAWYNCNRYNEDDAKAARDAQERSRAALQRYLFYCNRYMNHMQSLRFEHKLYAQVKQKME
390 400 410 420 430 440
>>CCDS2780.1 ARIH2 gene_id:10425|Hs108|chr3 (493 aa)
initn: 339 init1: 184 opt: 380 Z-score: 354.8 bits: 74.4 E(32554): 1.9e-13
Smith-Waterman score: 380; 29.2% identity (54.0% similar) in 202 aa overlap (16-215:135-327)
10 20 30 40
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTL
: : .:. :.. ..: :: ::
CCDS27 ILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLA-CQHQFCRS
110 120 130 140 150 160
50 60 70 80 90 100
pF1KSD CLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAE-IMQRYKKLQFEREVLF
: .:. .:.:.:. ...:: :: . :. . .. : . ..:.. :. :
CCDS27 CWEQHCSVLVKDGVGVGVSCMAQDCPLR--TPEDFVFPLLPNEELREKYRRYLFRDYVES
170 180 190 200 210 220
110 120 130 140 150 160
pF1KSD DPCRTWCPASTCQAVCQLQDVGLQTPQPVQCKACRMEFCSTCKASWHPGQGCPETMP-IT
::.. : : ..:. . :::. : :: :. .: : .:
CCDS27 HYQLQLCPGADCPMVIRVQE---PRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLT
230 240 250 260 270
170 180 190 200 210 220
pF1KSD FLPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLDDDFL
.. .: . .: : ::::.. ::.. :: .:.:..::: :::.::
CCDS27 KCADDSETANYI---SAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGS
280 290 300 310 320 330
230 240 250 260 270 280
pF1KSD LIHYDKGPCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCKCKCS
CCDS27 EYYECSRYKENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQE
340 350 360 370 380 390
>>CCDS69191.1 RNF217 gene_id:154214|Hs108|chr6 (542 aa)
initn: 245 init1: 159 opt: 345 Z-score: 322.7 bits: 68.6 E(32554): 1.2e-11
Smith-Waterman score: 346; 27.1% identity (49.7% similar) in 292 aa overlap (15-279:253-530)
10 20 30
pF1KSD MTTARYRPTWDLALDPLVS-----CKLCLGEYPVEQMTTIAQCQ
:: : :..:: . :.. . :.
CCDS69 IELEFYLAPEPFSMPSLLGAPPYSGLGGVGDPYVPLMVLMCRVCLEDKPIKPLPC---CK
230 240 250 260 270
40 50 60 70 80 90
pF1KSD CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYKK-LQF
: ::: :. .. : .. :.:: . : . :.:. . .. : .:: :..
CCDS69 KAVCEECLKVYLSAQVQLG-QVEIKCPITECFE--FLEETTVVYNLTHEDSIKYKYFLEL
280 290 300 310 320 330
100 110 120 130 140 150
pF1KSD EREVLFDPCRTWCPASTCQAVCQLQDVGLQTPQP--------VQCKACRMEFCSTCKASW
: .: :: :. .. : . : : .:: .:.. .: :.. :
CCDS69 GR---IDSSTKPCPQ--CKHFTTFKKKG-HIPTPSRSESKYKIQCPTCQFVWCFKCHSPW
340 350 360 370 380 390
160 170 180 190 200 210
pF1KSD HPGQGCPETMPITFLPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAF
: : .: : : : ..:. . ..:::::..:.: ::: .: :..:. :
CCDS69 HEGVNCKEYKKGDKL--LRHWASEIEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNF
400 410 420 430 440
220 230 240 250
pF1KSD CWYCLESLDD-DFLLIH----------YDKGPCRNKLGH-SRASVIWHRTQVVGIFAGFG
:. : : . :. : : : : .: . :.:: . .. .. .:
CCDS69 CYRCGERYRQLRFFGDHTSNLSIFGCKYRYLPERPHLRRLVRGSVCAGKLFIAPLIMVLG
450 460 470 480 490 500
260 270 280 290
pF1KSD LLL-LVASPFLLLATPFVLCCKCKCSKGDDDPLPT
: : .: . :.. :. ::
CCDS69 LALGAIAVVIGLFVFPIYCLCKKQRKRSRTGMHW
510 520 530 540
>>CCDS372.2 RNF19B gene_id:127544|Hs108|chr1 (732 aa)
initn: 325 init1: 141 opt: 338 Z-score: 314.9 bits: 67.5 E(32554): 3.2e-11
Smith-Waterman score: 446; 29.6% identity (58.4% similar) in 274 aa overlap (18-273:117-377)
10 20 30 40
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTLCL
: : ::: . : :. . .: : ::
CCDS37 EAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECPLCLVRLPPERAPRLLSCPHRSCRDCL
90 100 110 120 130 140
50 60 70 80 90 100
pF1KSD KQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVA-AEIMQRYKKLQFEREVLFDP
..:..: :.:. .. ::::. : .. :. ..:. ..: .:..:......: . ::
CCDS37 RHYLRLEISES-RVPISCPE--CSER--LNPHDIRLLLADPPLMHKYEEFMLRRYLASDP
150 160 170 180 190 200
110 120 130 140 150
pF1KSD -CRTWCPASTC-QAVCQLQDVGLQTPQPVQCK--ACRMEFCSTCKASWHPGQGCP----E
:: :::: : :: : . . :. .:. ::: :: :::.: : .
CCDS37 DCR-WCPAPDCGYAVIAY---GCASCPKLTCEREGCQTEFCYHCKQIWHPNQTCDMARQQ
210 220 230 240 250
160 170 180 190 200 210
pF1KSD TMPITFLPGETSAAFKMEEDDAP---IKRCPKCKVYIER--DEGCAQMMCKNCKHAFCWY
. . ...... ....: :: ::.:..:: . : .: .: : : :::
CCDS37 RAQTLRVRTKHTSGLSYGQESGPADDIKPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWL
260 270 280 290 300 310
220 230 240 250 260
pF1KSD CLESLDDDFLLIHY-DKGPCR--NKLGHSRAS-VIWHRTQVVGIFAGFGLLLLVASPFLL
:.. ..: .:: . . : .: :: . ..:. ..: .:..:. .: : ..
CCDS37 CMKEISD----LHYLSPSGCTFWGKKPWSRKKKILWQLGTLIGAPVGISLIAGIAIPAMV
320 330 340 350 360 370
270 280 290
pF1KSD LATPFVLCCKCKCSKGDDDPLPT
.. :
CCDS37 IGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVSVGIGVPIMLAYVY
380 390 400 410 420 430
>>CCDS34595.1 RNF216 gene_id:54476|Hs108|chr7 (866 aa)
initn: 143 init1: 65 opt: 331 Z-score: 307.7 bits: 66.5 E(32554): 8.1e-11
Smith-Waterman score: 331; 28.7% identity (53.6% similar) in 237 aa overlap (17-245:512-733)
10 20 30 40
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTLC
:. :. : ::.: :..: :. . .:: :
CCDS34 YEQKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAH-LFCKEC
490 500 510 520 530 540
50 60 70 80 90 100
pF1KSD LKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYKKLQFEREVL--F
: .:.. . . . .:: ...: . . .:.: .. :. .: . . :.:: .
CCDS34 LIRYAQEAVFGSGKLELSCMEGSCTCS--FPTSELEKVLPQTILYKYYERKAEEEVAAAY
550 560 570 580 590
110 120 130 140 150 160
pF1KSD DPCRTWCPASTCQAVCQLQDVG-LQTPQPVQCKACRMEFCSTCKASW--HPGQGCPETMP
. ::. . :. . .:: .. :.: :: : : :.. : : : : :
CCDS34 ADELVRCPSCSFPALLD-SDVKRFSCPNP----HCRKETCRKCQGLWKEHNGLTCEELAE
600 610 620 630 640 650
170 180 190 200 210
pF1KSD ITFLPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLD--
. .:: :: : :..: :: . . ..::: .: :. : .:. : :..
CCDS34 KDDIKYRTSIEEKMTA--ARIRKCHKCGTGLIKSEGCNRMSCR-CGAQMCYLCRVSINGY
660 670 680 690 700 710
220 230 240 250 260 270
pF1KSD DDFLLIHYDKG-PCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCC
: : . : ::.. :: : .:
CCDS34 DHFCQHPRSPGAPCQE---CSRCS-LWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKR
720 730 740 750 760
>>CCDS34594.1 RNF216 gene_id:54476|Hs108|chr7 (923 aa)
initn: 143 init1: 65 opt: 331 Z-score: 307.4 bits: 66.5 E(32554): 8.4e-11
Smith-Waterman score: 331; 28.7% identity (53.6% similar) in 237 aa overlap (17-245:569-790)
10 20 30 40
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTLC
:. :. : ::.: :..: :. . .:: :
CCDS34 YEQKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAH-LFCKEC
540 550 560 570 580 590
50 60 70 80 90 100
pF1KSD LKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYKKLQFEREVL--F
: .:.. . . . .:: ...: . . .:.: .. :. .: . . :.:: .
CCDS34 LIRYAQEAVFGSGKLELSCMEGSCTCS--FPTSELEKVLPQTILYKYYERKAEEEVAAAY
600 610 620 630 640 650
110 120 130 140 150 160
pF1KSD DPCRTWCPASTCQAVCQLQDVG-LQTPQPVQCKACRMEFCSTCKASW--HPGQGCPETMP
. ::. . :. . .:: .. :.: :: : : :.. : : : : :
CCDS34 ADELVRCPSCSFPALLD-SDVKRFSCPNP----HCRKETCRKCQGLWKEHNGLTCEELAE
660 670 680 690 700 710
170 180 190 200 210
pF1KSD ITFLPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLD--
. .:: :: : :..: :: . . ..::: .: :. : .:. : :..
CCDS34 KDDIKYRTSIEEKMTA--ARIRKCHKCGTGLIKSEGCNRMSCR-CGAQMCYLCRVSINGY
720 730 740 750 760
220 230 240 250 260 270
pF1KSD DDFLLIHYDKG-PCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCC
: : . : ::.. :: : .:
CCDS34 DHFCQHPRSPGAPCQE---CSRCS-LWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKR
770 780 790 800 810 820
292 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:21:23 2016 done: Thu Nov 3 00:21:24 2016
Total Scan time: 2.120 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]