Result of FASTA (omim) for
pF1KSDA0161
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0161, 292 aa
1>>>pF1KSDA0161 292 - 292 aa - 292 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4325+/-0.000383; mu= 17.3457+/- 0.024
mean_var=126.9826+/-26.018, 0's: 0 Z-trim(117.2): 97 B-trim: 1355 in 2/50
Lambda= 0.113816
statistics sampled from 28953 (29057) to 28953 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.341), width: 16
Scan time: 6.030
The best scores are: opt bits E(85289)
NP_001120833 (OMIM: 610872) E3 ubiquitin-protein l ( 587) 450 85.1 3.5e-16
NP_001287755 (OMIM: 610872) E3 ubiquitin-protein l ( 731) 450 85.2 4e-16
XP_011519741 (OMIM: 605624) PREDICTED: E3 ubiquiti ( 465) 389 75.0 3.1e-13
XP_011519740 (OMIM: 605624) PREDICTED: E3 ubiquiti ( 498) 389 75.0 3.2e-13
NP_005735 (OMIM: 605624) E3 ubiquitin-protein liga ( 557) 389 75.1 3.5e-13
XP_016861030 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 409) 380 73.4 8e-13
XP_016861029 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 409) 380 73.4 8e-13
XP_016861026 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 380 73.5 8.1e-13
XP_016861025 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 380 73.5 8.1e-13
XP_016861028 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 380 73.5 8.1e-13
XP_016861027 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 380 73.5 8.1e-13
XP_011531577 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 380 73.5 8.1e-13
XP_016861021 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 493) 380 73.5 8.9e-13
XP_016861020 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 493) 380 73.5 8.9e-13
NP_006312 (OMIM: 605615) E3 ubiquitin-protein liga ( 493) 380 73.5 8.9e-13
NP_001304262 (OMIM: 605615) E3 ubiquitin-protein l ( 493) 380 73.5 8.9e-13
NP_001304263 (OMIM: 605615) E3 ubiquitin-protein l ( 351) 362 70.4 5.6e-12
XP_006710421 (OMIM: 610872) PREDICTED: E3 ubiquiti ( 588) 338 66.7 1.2e-10
XP_006710420 (OMIM: 610872) PREDICTED: E3 ubiquiti ( 688) 338 66.8 1.3e-10
NP_699172 (OMIM: 610872) E3 ubiquitin-protein liga ( 732) 338 66.9 1.4e-10
XP_006710419 (OMIM: 610872) PREDICTED: E3 ubiquiti ( 732) 338 66.9 1.4e-10
XP_011531575 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 432) 334 65.9 1.5e-10
XP_011531572 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 444) 334 65.9 1.6e-10
XP_016861022 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 444) 334 65.9 1.6e-10
XP_016861023 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 444) 334 65.9 1.6e-10
XP_016861024 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 444) 334 65.9 1.6e-10
XP_011531573 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 444) 334 65.9 1.6e-10
XP_011531570 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 516) 334 66.0 1.7e-10
XP_011531569 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 516) 334 66.0 1.7e-10
XP_011531568 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 516) 334 66.0 1.7e-10
XP_011531567 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 516) 334 66.0 1.7e-10
XP_016867854 (OMIM: 212840,609948) PREDICTED: E3 u ( 488) 331 65.5 2.3e-10
XP_011513738 (OMIM: 212840,609948) PREDICTED: E3 u ( 488) 331 65.5 2.3e-10
XP_016867852 (OMIM: 212840,609948) PREDICTED: E3 u ( 866) 331 65.8 3.4e-10
NP_996999 (OMIM: 212840,609948) E3 ubiquitin-prote ( 866) 331 65.8 3.4e-10
XP_005249842 (OMIM: 212840,609948) PREDICTED: E3 u ( 923) 331 65.8 3.5e-10
NP_996994 (OMIM: 212840,609948) E3 ubiquitin-prote ( 923) 331 65.8 3.5e-10
XP_016868793 (OMIM: 607119) PREDICTED: E3 ubiquiti ( 784) 330 65.6 3.5e-10
XP_011515258 (OMIM: 607119) PREDICTED: E3 ubiquiti ( 784) 330 65.6 3.5e-10
XP_005250910 (OMIM: 607119) PREDICTED: E3 ubiquiti ( 838) 330 65.6 3.7e-10
XP_016868792 (OMIM: 607119) PREDICTED: E3 ubiquiti ( 838) 330 65.6 3.7e-10
NP_001267468 (OMIM: 607119) E3 ubiquitin-protein l ( 838) 330 65.6 3.7e-10
XP_016868791 (OMIM: 607119) PREDICTED: E3 ubiquiti ( 838) 330 65.6 3.7e-10
NP_904355 (OMIM: 607119) E3 ubiquitin-protein liga ( 838) 330 65.6 3.7e-10
NP_056250 (OMIM: 607119) E3 ubiquitin-protein liga ( 838) 330 65.6 3.7e-10
XP_011512731 (OMIM: 607489) PREDICTED: cullin-9 is (1834) 311 62.9 5.2e-09
XP_016866079 (OMIM: 607489) PREDICTED: cullin-9 is (1909) 311 63.0 5.3e-09
XP_011512729 (OMIM: 607489) PREDICTED: cullin-9 is (2095) 311 63.0 5.6e-09
XP_011512728 (OMIM: 607489) PREDICTED: cullin-9 is (2339) 311 63.1 6e-09
XP_011512727 (OMIM: 607489) PREDICTED: cullin-9 is (2456) 311 63.1 6.2e-09
>>NP_001120833 (OMIM: 610872) E3 ubiquitin-protein ligas (587 aa)
initn: 325 init1: 141 opt: 450 Z-score: 411.6 bits: 85.1 E(85289): 3.5e-16
Smith-Waterman score: 450; 30.4% identity (57.9% similar) in 273 aa overlap (18-273:117-376)
10 20 30 40
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTLCL
: : ::: . : :. . .: : ::
NP_001 EAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECPLCLVRLPPERAPRLLSCPHRSCRDCL
90 100 110 120 130 140
50 60 70 80 90 100
pF1KSD KQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVA-AEIMQRYKKLQFEREVLFDP
..:..: :.:. .. ::::. : .. :. ..:. ..: .:..:......: . ::
NP_001 RHYLRLEISES-RVPISCPE--CSER--LNPHDIRLLLADPPLMHKYEEFMLRRYLASDP
150 160 170 180 190 200
110 120 130 140 150
pF1KSD -CRTWCPASTC-QAVCQLQDVGLQTPQPVQCK--ACRMEFCSTCKASWHPGQGCP-----
:: :::: : :: : . . :. .:. ::: :: :::.: :
NP_001 DCR-WCPAPDCGYAVIAY---GCASCPKLTCEREGCQTEFCYHCKQIWHPNQTCDMARQQ
210 220 230 240 250
160 170 180 190 200 210
pF1KSD ETMPITFLPGETSA-AFKMEEDDAPIKRCPKCKVYIER--DEGCAQMMCKNCKHAFCWYC
... . .::. .. .: :: ::.:..:: . : .: .: : : ::: :
NP_001 RAQTLRVRTKHTSGLSYGQESGPDDIKPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWLC
260 270 280 290 300 310
220 230 240 250 260 270
pF1KSD LESLDDDFLLIHY-DKGPCR--NKLGHSRAS-VIWHRTQVVGIFAGFGLLLLVASPFLLL
.. ..: .:: . . : .: :: . ..:. ..: .:..:. .: : ...
NP_001 MKEISD----LHYLSPSGCTFWGKKPWSRKKKILWQLGTLIGAPVGISLIAGIAIPAMVI
320 330 340 350 360 370
280 290
pF1KSD ATPFVLCCKCKCSKGDDDPLPT
. :
NP_001 GIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVSVGIGVPIMLAYVYG
380 390 400 410 420 430
>>NP_001287755 (OMIM: 610872) E3 ubiquitin-protein ligas (731 aa)
initn: 325 init1: 141 opt: 450 Z-score: 410.5 bits: 85.2 E(85289): 4e-16
Smith-Waterman score: 450; 30.4% identity (57.9% similar) in 273 aa overlap (18-273:117-376)
10 20 30 40
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTLCL
: : ::: . : :. . .: : ::
NP_001 EAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECPLCLVRLPPERAPRLLSCPHRSCRDCL
90 100 110 120 130 140
50 60 70 80 90 100
pF1KSD KQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVA-AEIMQRYKKLQFEREVLFDP
..:..: :.:. .. ::::. : .. :. ..:. ..: .:..:......: . ::
NP_001 RHYLRLEISES-RVPISCPE--CSER--LNPHDIRLLLADPPLMHKYEEFMLRRYLASDP
150 160 170 180 190 200
110 120 130 140 150
pF1KSD -CRTWCPASTC-QAVCQLQDVGLQTPQPVQCK--ACRMEFCSTCKASWHPGQGCP-----
:: :::: : :: : . . :. .:. ::: :: :::.: :
NP_001 DCR-WCPAPDCGYAVIAY---GCASCPKLTCEREGCQTEFCYHCKQIWHPNQTCDMARQQ
210 220 230 240 250
160 170 180 190 200 210
pF1KSD ETMPITFLPGETSA-AFKMEEDDAPIKRCPKCKVYIER--DEGCAQMMCKNCKHAFCWYC
... . .::. .. .: :: ::.:..:: . : .: .: : : ::: :
NP_001 RAQTLRVRTKHTSGLSYGQESGPDDIKPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWLC
260 270 280 290 300 310
220 230 240 250 260 270
pF1KSD LESLDDDFLLIHY-DKGPCR--NKLGHSRAS-VIWHRTQVVGIFAGFGLLLLVASPFLLL
.. ..: .:: . . : .: :: . ..:. ..: .:..:. .: : ...
NP_001 MKEISD----LHYLSPSGCTFWGKKPWSRKKKILWQLGTLIGAPVGISLIAGIAIPAMVI
320 330 340 350 360 370
280 290
pF1KSD ATPFVLCCKCKCSKGDDDPLPT
. :
NP_001 GIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVSVGIGVPIMLAYVYG
380 390 400 410 420 430
>>XP_011519741 (OMIM: 605624) PREDICTED: E3 ubiquitin-pr (465 aa)
initn: 303 init1: 116 opt: 389 Z-score: 358.6 bits: 75.0 E(85289): 3.1e-13
Smith-Waterman score: 389; 31.5% identity (55.2% similar) in 203 aa overlap (20-215:94-284)
10 20 30 40
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQ
:..: .:: .: . .: :: : ..
XP_011 KLFAECHVINPSKKSRTRQMNTRSSAQDMPCQICYLNYPNSYFTGL-ECGHKFCMQCWSE
70 80 90 100 110 120
50 60 70 80 90 100
pF1KSD YVEL-LIKEGLETAISCPDAACPKQGHLQENEIECMVA-AEIMQRYKKLQFEREVLFDPC
:. ...::. .:::: .: ...: . ... ... .:..: . : .
XP_011 YLTTKIMEEGMGQTISCPAHGCDIL--VDDNTVMRLITDSKVKLKYQHLITNSFVECNRL
130 140 150 160 170 180
110 120 130 140 150 160
pF1KSD RTWCPASTCQAVCQLQDVGLQTPQPVQCKACRMEFCSTCKASWHPGQGCP---ETMPITF
:::: :. : ..: .::.:: : .:: .: .:: : . .
XP_011 LKWCPAPDCHHVVKVQ---YPDAKPVRCK-CGRQFCFNCGENWHDPVKCKWLKKWIKKCD
190 200 210 220 230
170 180 190 200 210 220
pF1KSD LPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKN--CKHAFCWYCLESLDDDF
.::: . : :.::::.: ::.: :: .:.:.: :: ::: ::
XP_011 DDSETSNWIA-----ANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG
240 250 260 270 280 290
230 240 250 260 270 280
pF1KSD LLIHYDKGPCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCKCKC
XP_011 SAWYNCNRYNEDDAKAARDAQERSRAALQRYLFYCNRYMNHMQSLRFEHKLYAQVKQKME
300 310 320 330 340 350
>>XP_011519740 (OMIM: 605624) PREDICTED: E3 ubiquitin-pr (498 aa)
initn: 303 init1: 116 opt: 389 Z-score: 358.3 bits: 75.0 E(85289): 3.2e-13
Smith-Waterman score: 389; 31.5% identity (55.2% similar) in 203 aa overlap (20-215:127-317)
10 20 30 40
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQ
:..: .:: .: . .: :: : ..
XP_011 KLFAECHVINPSKKSRTRQMNTRSSAQDMPCQICYLNYPNSYFTGL-ECGHKFCMQCWSE
100 110 120 130 140 150
50 60 70 80 90 100
pF1KSD YVEL-LIKEGLETAISCPDAACPKQGHLQENEIECMVA-AEIMQRYKKLQFEREVLFDPC
:. ...::. .:::: .: ...: . ... ... .:..: . : .
XP_011 YLTTKIMEEGMGQTISCPAHGCDIL--VDDNTVMRLITDSKVKLKYQHLITNSFVECNRL
160 170 180 190 200 210
110 120 130 140 150 160
pF1KSD RTWCPASTCQAVCQLQDVGLQTPQPVQCKACRMEFCSTCKASWHPGQGCP---ETMPITF
:::: :. : ..: .::.:: : .:: .: .:: : . .
XP_011 LKWCPAPDCHHVVKVQ---YPDAKPVRCK-CGRQFCFNCGENWHDPVKCKWLKKWIKKCD
220 230 240 250 260
170 180 190 200 210 220
pF1KSD LPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKN--CKHAFCWYCLESLDDDF
.::: . : :.::::.: ::.: :: .:.:.: :: ::: ::
XP_011 DDSETSNWIA-----ANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG
270 280 290 300 310 320
230 240 250 260 270 280
pF1KSD LLIHYDKGPCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCKCKC
XP_011 SAWYNCNRYNEDDAKAARDAQERSRAALQRYLFYCNRYMNHMQSLRFEHKLYAQVKQKME
330 340 350 360 370 380
>>NP_005735 (OMIM: 605624) E3 ubiquitin-protein ligase A (557 aa)
initn: 303 init1: 116 opt: 389 Z-score: 357.7 bits: 75.1 E(85289): 3.5e-13
Smith-Waterman score: 389; 31.5% identity (55.2% similar) in 203 aa overlap (20-215:186-376)
10 20 30 40
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQ
:..: .:: .: . .: :: : ..
NP_005 KLFAECHVINPSKKSRTRQMNTRSSAQDMPCQICYLNYPNSYFTGL-ECGHKFCMQCWSE
160 170 180 190 200 210
50 60 70 80 90 100
pF1KSD YVEL-LIKEGLETAISCPDAACPKQGHLQENEIECMVA-AEIMQRYKKLQFEREVLFDPC
:. ...::. .:::: .: ...: . ... ... .:..: . : .
NP_005 YLTTKIMEEGMGQTISCPAHGCDIL--VDDNTVMRLITDSKVKLKYQHLITNSFVECNRL
220 230 240 250 260 270
110 120 130 140 150 160
pF1KSD RTWCPASTCQAVCQLQDVGLQTPQPVQCKACRMEFCSTCKASWHPGQGCP---ETMPITF
:::: :. : ..: .::.:: : .:: .: .:: : . .
NP_005 LKWCPAPDCHHVVKVQ---YPDAKPVRCK-CGRQFCFNCGENWHDPVKCKWLKKWIKKCD
280 290 300 310 320
170 180 190 200 210 220
pF1KSD LPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKN--CKHAFCWYCLESLDDDF
.::: . : :.::::.: ::.: :: .:.:.: :: ::: ::
NP_005 DDSETSNWIA-----ANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG
330 340 350 360 370 380
230 240 250 260 270 280
pF1KSD LLIHYDKGPCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCKCKC
NP_005 SAWYNCNRYNEDDAKAARDAQERSRAALQRYLFYCNRYMNHMQSLRFEHKLYAQVKQKME
390 400 410 420 430 440
>>XP_016861030 (OMIM: 605615) PREDICTED: E3 ubiquitin-pr (409 aa)
initn: 339 init1: 184 opt: 380 Z-score: 351.2 bits: 73.4 E(85289): 8e-13
Smith-Waterman score: 380; 29.2% identity (54.0% similar) in 202 aa overlap (16-215:51-243)
10 20 30 40
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTL
: : .:. :.. ..: :: ::
XP_016 ILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLA-CQHQFCRS
30 40 50 60 70
50 60 70 80 90 100
pF1KSD CLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAE-IMQRYKKLQFEREVLF
: .:. .:.:.:. ...:: :: . :. . .. : . ..:.. :. :
XP_016 CWEQHCSVLVKDGVGVGVSCMAQDCPLR--TPEDFVFPLLPNEELREKYRRYLFRDYVES
80 90 100 110 120 130
110 120 130 140 150 160
pF1KSD DPCRTWCPASTCQAVCQLQDVGLQTPQPVQCKACRMEFCSTCKASWHPGQGCPETMP-IT
::.. : : ..:. . :::. : :: :. .: : .:
XP_016 HYQLQLCPGADCPMVIRVQE---PRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLT
140 150 160 170 180 190
170 180 190 200 210 220
pF1KSD FLPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLDDDFL
.. .: . .: : ::::.. ::.. :: .:.:..::: :::.::
XP_016 KCADDSETANYI---SAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGS
200 210 220 230 240 250
230 240 250 260 270 280
pF1KSD LIHYDKGPCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCKCKCS
XP_016 EYYECSRYKENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQE
260 270 280 290 300 310
>>XP_016861029 (OMIM: 605615) PREDICTED: E3 ubiquitin-pr (409 aa)
initn: 339 init1: 184 opt: 380 Z-score: 351.2 bits: 73.4 E(85289): 8e-13
Smith-Waterman score: 380; 29.2% identity (54.0% similar) in 202 aa overlap (16-215:51-243)
10 20 30 40
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTL
: : .:. :.. ..: :: ::
XP_016 ILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLA-CQHQFCRS
30 40 50 60 70
50 60 70 80 90 100
pF1KSD CLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAE-IMQRYKKLQFEREVLF
: .:. .:.:.:. ...:: :: . :. . .. : . ..:.. :. :
XP_016 CWEQHCSVLVKDGVGVGVSCMAQDCPLR--TPEDFVFPLLPNEELREKYRRYLFRDYVES
80 90 100 110 120 130
110 120 130 140 150 160
pF1KSD DPCRTWCPASTCQAVCQLQDVGLQTPQPVQCKACRMEFCSTCKASWHPGQGCPETMP-IT
::.. : : ..:. . :::. : :: :. .: : .:
XP_016 HYQLQLCPGADCPMVIRVQE---PRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLT
140 150 160 170 180 190
170 180 190 200 210 220
pF1KSD FLPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLDDDFL
.. .: . .: : ::::.. ::.. :: .:.:..::: :::.::
XP_016 KCADDSETANYI---SAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGS
200 210 220 230 240 250
230 240 250 260 270 280
pF1KSD LIHYDKGPCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCKCKCS
XP_016 EYYECSRYKENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQE
260 270 280 290 300 310
>>XP_016861026 (OMIM: 605615) PREDICTED: E3 ubiquitin-pr (421 aa)
initn: 339 init1: 184 opt: 380 Z-score: 351.1 bits: 73.5 E(85289): 8.1e-13
Smith-Waterman score: 380; 29.2% identity (54.0% similar) in 202 aa overlap (16-215:63-255)
10 20 30 40
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTL
: : .:. :.. ..: :: ::
XP_016 ILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLA-CQHQFCRS
40 50 60 70 80 90
50 60 70 80 90 100
pF1KSD CLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAE-IMQRYKKLQFEREVLF
: .:. .:.:.:. ...:: :: . :. . .. : . ..:.. :. :
XP_016 CWEQHCSVLVKDGVGVGVSCMAQDCPLR--TPEDFVFPLLPNEELREKYRRYLFRDYVES
100 110 120 130 140
110 120 130 140 150 160
pF1KSD DPCRTWCPASTCQAVCQLQDVGLQTPQPVQCKACRMEFCSTCKASWHPGQGCPETMP-IT
::.. : : ..:. . :::. : :: :. .: : .:
XP_016 HYQLQLCPGADCPMVIRVQE---PRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLT
150 160 170 180 190 200
170 180 190 200 210 220
pF1KSD FLPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLDDDFL
.. .: . .: : ::::.. ::.. :: .:.:..::: :::.::
XP_016 KCADDSETANYI---SAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGS
210 220 230 240 250 260
230 240 250 260 270 280
pF1KSD LIHYDKGPCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCKCKCS
XP_016 EYYECSRYKENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQE
270 280 290 300 310 320
>>XP_016861025 (OMIM: 605615) PREDICTED: E3 ubiquitin-pr (421 aa)
initn: 339 init1: 184 opt: 380 Z-score: 351.1 bits: 73.5 E(85289): 8.1e-13
Smith-Waterman score: 380; 29.2% identity (54.0% similar) in 202 aa overlap (16-215:63-255)
10 20 30 40
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTL
: : .:. :.. ..: :: ::
XP_016 ILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLA-CQHQFCRS
40 50 60 70 80 90
50 60 70 80 90 100
pF1KSD CLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAE-IMQRYKKLQFEREVLF
: .:. .:.:.:. ...:: :: . :. . .. : . ..:.. :. :
XP_016 CWEQHCSVLVKDGVGVGVSCMAQDCPLR--TPEDFVFPLLPNEELREKYRRYLFRDYVES
100 110 120 130 140
110 120 130 140 150 160
pF1KSD DPCRTWCPASTCQAVCQLQDVGLQTPQPVQCKACRMEFCSTCKASWHPGQGCPETMP-IT
::.. : : ..:. . :::. : :: :. .: : .:
XP_016 HYQLQLCPGADCPMVIRVQE---PRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLT
150 160 170 180 190 200
170 180 190 200 210 220
pF1KSD FLPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLDDDFL
.. .: . .: : ::::.. ::.. :: .:.:..::: :::.::
XP_016 KCADDSETANYI---SAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGS
210 220 230 240 250 260
230 240 250 260 270 280
pF1KSD LIHYDKGPCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCKCKCS
XP_016 EYYECSRYKENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQE
270 280 290 300 310 320
>>XP_016861028 (OMIM: 605615) PREDICTED: E3 ubiquitin-pr (421 aa)
initn: 339 init1: 184 opt: 380 Z-score: 351.1 bits: 73.5 E(85289): 8.1e-13
Smith-Waterman score: 380; 29.2% identity (54.0% similar) in 202 aa overlap (16-215:63-255)
10 20 30 40
pF1KSD MTTARYRPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTL
: : .:. :.. ..: :: ::
XP_016 ILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLA-CQHQFCRS
40 50 60 70 80 90
50 60 70 80 90 100
pF1KSD CLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAE-IMQRYKKLQFEREVLF
: .:. .:.:.:. ...:: :: . :. . .. : . ..:.. :. :
XP_016 CWEQHCSVLVKDGVGVGVSCMAQDCPLR--TPEDFVFPLLPNEELREKYRRYLFRDYVES
100 110 120 130 140
110 120 130 140 150 160
pF1KSD DPCRTWCPASTCQAVCQLQDVGLQTPQPVQCKACRMEFCSTCKASWHPGQGCPETMP-IT
::.. : : ..:. . :::. : :: :. .: : .:
XP_016 HYQLQLCPGADCPMVIRVQE---PRARRVQCNRCNEVFCFKCRQMYHAPTDCATIRKWLT
150 160 170 180 190 200
170 180 190 200 210 220
pF1KSD FLPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLDDDFL
.. .: . .: : ::::.. ::.. :: .:.:..::: :::.::
XP_016 KCADDSETANYI---SAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGS
210 220 230 240 250 260
230 240 250 260 270 280
pF1KSD LIHYDKGPCRNKLGHSRASVIWHRTQVVGIFAGFGLLLLVASPFLLLATPFVLCCKCKCS
XP_016 EYYECSRYKENPDIVNQSQQAQAREALKKYLFYFERWENHNKSLQLEAQTYQRIHEKIQE
270 280 290 300 310 320
292 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:21:24 2016 done: Thu Nov 3 00:21:25 2016
Total Scan time: 6.030 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]