FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0163, 550 aa
  1>>>pF1KSDA0163 550 - 550 aa - 550 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4169+/-0.000851; mu= 10.9068+/- 0.051
 mean_var=188.7576+/-37.789, 0's: 0 Z-trim(113.8): 34  B-trim: 177 in 2/52
 Lambda= 0.093352
 statistics sampled from 14415 (14439) to 14415 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.444), width:  16
 Scan time:  3.030

The best scores are:                                      opt bits E(32554)
CCDS33598.1 DGCR2 gene_id:9993|Hs108|chr22         ( 550) 3960 545.8  5e-155
CCDS54496.1 DGCR2 gene_id:9993|Hs108|chr22         ( 509) 3475 480.4 2.2e-135


>>CCDS33598.1 DGCR2 gene_id:9993|Hs108|chr22              (550 aa)
 initn: 3960 init1: 3960 opt: 3960  Z-score: 2896.7  bits: 545.8 E(32554): 5e-155
Smith-Waterman score: 3960; 100.0% identity (100.0% similar) in 550 aa overlap (1-550:1-550)

               10        20        30        40        50        60
pF1KSD MVPKADSGAFLLLFLLVLTVTEPLRPELRCNPGQFACRSGTIQCIPLPWQCDGWATCEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MVPKADSGAFLLLFLLVLTVTEPLRPELRCNPGQFACRSGTIQCIPLPWQCDGWATCEDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD SDEANCPEVTGEVRPHHGKEAVDPRQGRARGGDPSHFHAVNVAQPVRFSSFLGKCPTGWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SDEANCPEVTGEVRPHHGKEAVDPRQGRARGGDPSHFHAVNVAQPVRFSSFLGKCPTGWH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD HYEGTASCYRVYLSGENYWDAAQTCQRLNGSLATFSTDQELRFVLAQEWDQPERSFGWKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 HYEGTASCYRVYLSGENYWDAAQTCQRLNGSLATFSTDQELRFVLAQEWDQPERSFGWKD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD QRKLWVGYQYVITGRNRSLEGRWEVAFKGSSEVFLPPDPIFASAMSENDNVFCAQLQCFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QRKLWVGYQYVITGRNRSLEGRWEVAFKGSSEVFLPPDPIFASAMSENDNVFCAQLQCFH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD FPTLRHHDLHSWHAESCYEKSSFLCKRSQTCVDIKDNVVDEGFYFTPKGDDPCLSCTCHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FPTLRHHDLHSWHAESCYEKSSFLCKRSQTCVDIKDNVVDEGFYFTPKGDDPCLSCTCHG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD GEPEMCVAALCERPQGCQQYRKDPKECCKFMCLDPDGNSLFDSMASGMRLVVSCISSFLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GEPEMCVAALCERPQGCQQYRKDPKECCKFMCLDPDGNSLFDSMASGMRLVVSCISSFLI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD LSLLLFMVHRLRQRRRERIESLIGANLHHFNLGRRIPGFDYGPDGFGTGLTPLHLSDDGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LSLLLFMVHRLRQRRRERIESLIGANLHHFNLGRRIPGFDYGPDGFGTGLTPLHLSDDGE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD GGTFHFHDPPPPYTAYKYPDIGQPDDPPPPYEASIHPDSVFYDPADDDAFEPVEVSLPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GGTFHFHDPPPPYTAYKYPDIGQPDDPPPPYEASIHPDSVFYDPADDDAFEPVEVSLPAP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD GDGGSEGALLRRLEQPLPTAGASLADLEDSADSSSALLVPPDPAQSGSTPAAEALPGGGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GDGGSEGALLRRLEQPLPTAGASLADLEDSADSSSALLVPPDPAQSGSTPAAEALPGGGR
              490       500       510       520       530       540

              550
pF1KSD HSRSSLNTVV
       ::::::::::
CCDS33 HSRSSLNTVV
              550

>>CCDS54496.1 DGCR2 gene_id:9993|Hs108|chr22              (509 aa)
 initn: 3475 init1: 3475 opt: 3475  Z-score: 2544.1  bits: 480.4 E(32554): 2.2e-135
Smith-Waterman score: 3536; 92.5% identity (92.5% similar) in 550 aa overlap (1-550:1-509)

               10        20        30        40        50        60
pF1KSD MVPKADSGAFLLLFLLVLTVTEPLRPELRCNPGQFACRSGTIQCIPLPWQCDGWATCEDE
       :::::::::::::::::::::::::::                                 
CCDS54 MVPKADSGAFLLLFLLVLTVTEPLRPE---------------------------------
               10        20                                        

               70        80        90       100       110       120
pF1KSD SDEANCPEVTGEVRPHHGKEAVDPRQGRARGGDPSHFHAVNVAQPVRFSSFLGKCPTGWH
               ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 --------VTGEVRPHHGKEAVDPRQGRARGGDPSHFHAVNVAQPVRFSSFLGKCPTGWH
                30        40        50        60        70         

              130       140       150       160       170       180
pF1KSD HYEGTASCYRVYLSGENYWDAAQTCQRLNGSLATFSTDQELRFVLAQEWDQPERSFGWKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HYEGTASCYRVYLSGENYWDAAQTCQRLNGSLATFSTDQELRFVLAQEWDQPERSFGWKD
      80        90       100       110       120       130         

              190       200       210       220       230       240
pF1KSD QRKLWVGYQYVITGRNRSLEGRWEVAFKGSSEVFLPPDPIFASAMSENDNVFCAQLQCFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QRKLWVGYQYVITGRNRSLEGRWEVAFKGSSEVFLPPDPIFASAMSENDNVFCAQLQCFH
     140       150       160       170       180       190         

              250       260       270       280       290       300
pF1KSD FPTLRHHDLHSWHAESCYEKSSFLCKRSQTCVDIKDNVVDEGFYFTPKGDDPCLSCTCHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FPTLRHHDLHSWHAESCYEKSSFLCKRSQTCVDIKDNVVDEGFYFTPKGDDPCLSCTCHG
     200       210       220       230       240       250         

              310       320       330       340       350       360
pF1KSD GEPEMCVAALCERPQGCQQYRKDPKECCKFMCLDPDGNSLFDSMASGMRLVVSCISSFLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GEPEMCVAALCERPQGCQQYRKDPKECCKFMCLDPDGNSLFDSMASGMRLVVSCISSFLI
     260       270       280       290       300       310         

              370       380       390       400       410       420
pF1KSD LSLLLFMVHRLRQRRRERIESLIGANLHHFNLGRRIPGFDYGPDGFGTGLTPLHLSDDGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LSLLLFMVHRLRQRRRERIESLIGANLHHFNLGRRIPGFDYGPDGFGTGLTPLHLSDDGE
     320       330       340       350       360       370         

              430       440       450       460       470       480
pF1KSD GGTFHFHDPPPPYTAYKYPDIGQPDDPPPPYEASIHPDSVFYDPADDDAFEPVEVSLPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GGTFHFHDPPPPYTAYKYPDIGQPDDPPPPYEASIHPDSVFYDPADDDAFEPVEVSLPAP
     380       390       400       410       420       430         

              490       500       510       520       530       540
pF1KSD GDGGSEGALLRRLEQPLPTAGASLADLEDSADSSSALLVPPDPAQSGSTPAAEALPGGGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GDGGSEGALLRRLEQPLPTAGASLADLEDSADSSSALLVPPDPAQSGSTPAAEALPGGGR
     440       450       460       470       480       490         

              550
pF1KSD HSRSSLNTVV
       ::::::::::
CCDS54 HSRSSLNTVV
     500         




550 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:22:36 2016 done: Thu Nov  3 00:22:37 2016
 Total Scan time:  3.030 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]