Result of FASTA (omim) for
pF1KSDA0163
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0163, 550 aa
1>>>pF1KSDA0163 550 - 550 aa - 550 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0689+/-0.000341; mu= 6.7280+/- 0.021
mean_var=204.2393+/-40.725, 0's: 0 Z-trim(121.2): 47 B-trim: 41 in 1/59
Lambda= 0.089744
statistics sampled from 37524 (37575) to 37524 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.441), width: 16
Scan time: 8.590
The best scores are: opt bits E(85289)
NP_005128 (OMIM: 192430,600594) integral membrane ( 550) 3960 525.5 1.7e-148
NP_001171710 (OMIM: 192430,600594) integral membra ( 547) 3917 519.9 8e-147
NP_001167004 (OMIM: 192430,600594) integral membra ( 509) 3475 462.6 1.3e-129
NP_001167005 (OMIM: 192430,600594) integral membra ( 506) 3432 457.1 6e-128
XP_016873225 (OMIM: 133780,144750,166710,259770,60 ( 833) 241 44.1 0.002
NP_001278831 (OMIM: 133780,144750,166710,259770,60 (1034) 241 44.2 0.0024
XP_016873224 (OMIM: 133780,144750,166710,259770,60 (1072) 241 44.2 0.0024
XP_011543333 (OMIM: 133780,144750,166710,259770,60 (1600) 241 44.4 0.0033
NP_002326 (OMIM: 133780,144750,166710,259770,60181 (1615) 241 44.4 0.0033
XP_011543332 (OMIM: 133780,144750,166710,259770,60 (1624) 241 44.4 0.0033
XP_005274051 (OMIM: 133780,144750,166710,259770,60 (1653) 241 44.4 0.0033
XP_011543331 (OMIM: 133780,144750,166710,259770,60 (1662) 241 44.4 0.0034
>>NP_005128 (OMIM: 192430,600594) integral membrane prot (550 aa)
initn: 3960 init1: 3960 opt: 3960 Z-score: 2787.0 bits: 525.5 E(85289): 1.7e-148
Smith-Waterman score: 3960; 100.0% identity (100.0% similar) in 550 aa overlap (1-550:1-550)
10 20 30 40 50 60
pF1KSD MVPKADSGAFLLLFLLVLTVTEPLRPELRCNPGQFACRSGTIQCIPLPWQCDGWATCEDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MVPKADSGAFLLLFLLVLTVTEPLRPELRCNPGQFACRSGTIQCIPLPWQCDGWATCEDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SDEANCPEVTGEVRPHHGKEAVDPRQGRARGGDPSHFHAVNVAQPVRFSSFLGKCPTGWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SDEANCPEVTGEVRPHHGKEAVDPRQGRARGGDPSHFHAVNVAQPVRFSSFLGKCPTGWH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD HYEGTASCYRVYLSGENYWDAAQTCQRLNGSLATFSTDQELRFVLAQEWDQPERSFGWKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 HYEGTASCYRVYLSGENYWDAAQTCQRLNGSLATFSTDQELRFVLAQEWDQPERSFGWKD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD QRKLWVGYQYVITGRNRSLEGRWEVAFKGSSEVFLPPDPIFASAMSENDNVFCAQLQCFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QRKLWVGYQYVITGRNRSLEGRWEVAFKGSSEVFLPPDPIFASAMSENDNVFCAQLQCFH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD FPTLRHHDLHSWHAESCYEKSSFLCKRSQTCVDIKDNVVDEGFYFTPKGDDPCLSCTCHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FPTLRHHDLHSWHAESCYEKSSFLCKRSQTCVDIKDNVVDEGFYFTPKGDDPCLSCTCHG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD GEPEMCVAALCERPQGCQQYRKDPKECCKFMCLDPDGNSLFDSMASGMRLVVSCISSFLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GEPEMCVAALCERPQGCQQYRKDPKECCKFMCLDPDGNSLFDSMASGMRLVVSCISSFLI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD LSLLLFMVHRLRQRRRERIESLIGANLHHFNLGRRIPGFDYGPDGFGTGLTPLHLSDDGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LSLLLFMVHRLRQRRRERIESLIGANLHHFNLGRRIPGFDYGPDGFGTGLTPLHLSDDGE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD GGTFHFHDPPPPYTAYKYPDIGQPDDPPPPYEASIHPDSVFYDPADDDAFEPVEVSLPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GGTFHFHDPPPPYTAYKYPDIGQPDDPPPPYEASIHPDSVFYDPADDDAFEPVEVSLPAP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD GDGGSEGALLRRLEQPLPTAGASLADLEDSADSSSALLVPPDPAQSGSTPAAEALPGGGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GDGGSEGALLRRLEQPLPTAGASLADLEDSADSSSALLVPPDPAQSGSTPAAEALPGGGR
490 500 510 520 530 540
550
pF1KSD HSRSSLNTVV
::::::::::
NP_005 HSRSSLNTVV
550
>>NP_001171710 (OMIM: 192430,600594) integral membrane p (547 aa)
initn: 3920 init1: 3142 opt: 3917 Z-score: 2756.9 bits: 519.9 E(85289): 8e-147
Smith-Waterman score: 3917; 99.3% identity (99.3% similar) in 550 aa overlap (1-550:1-547)
10 20 30 40 50 60
pF1KSD MVPKADSGAFLLLFLLVLTVTEPLRPELRCNPGQFACRSGTIQCIPLPWQCDGWATCEDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVPKADSGAFLLLFLLVLTVTEPLRPELRCNPGQFACRSGTIQCIPLPWQCDGWATCEDE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD SDEANCPEVTGEVRPHHGKEAVDPRQGRARGGDPSHFHAVNVAQPVRFSSFLGKCPTGWH
::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
NP_001 SDEANCPEVTGEVRPHHGKEAVDPRQGRARGGDPSHFHAVNVAQPVRFSR---KCPTGWH
70 80 90 100 110
130 140 150 160 170 180
pF1KSD HYEGTASCYRVYLSGENYWDAAQTCQRLNGSLATFSTDQELRFVLAQEWDQPERSFGWKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HYEGTASCYRVYLSGENYWDAAQTCQRLNGSLATFSTDQELRFVLAQEWDQPERSFGWKD
120 130 140 150 160 170
190 200 210 220 230 240
pF1KSD QRKLWVGYQYVITGRNRSLEGRWEVAFKGSSEVFLPPDPIFASAMSENDNVFCAQLQCFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRKLWVGYQYVITGRNRSLEGRWEVAFKGSSEVFLPPDPIFASAMSENDNVFCAQLQCFH
180 190 200 210 220 230
250 260 270 280 290 300
pF1KSD FPTLRHHDLHSWHAESCYEKSSFLCKRSQTCVDIKDNVVDEGFYFTPKGDDPCLSCTCHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPTLRHHDLHSWHAESCYEKSSFLCKRSQTCVDIKDNVVDEGFYFTPKGDDPCLSCTCHG
240 250 260 270 280 290
310 320 330 340 350 360
pF1KSD GEPEMCVAALCERPQGCQQYRKDPKECCKFMCLDPDGNSLFDSMASGMRLVVSCISSFLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEPEMCVAALCERPQGCQQYRKDPKECCKFMCLDPDGNSLFDSMASGMRLVVSCISSFLI
300 310 320 330 340 350
370 380 390 400 410 420
pF1KSD LSLLLFMVHRLRQRRRERIESLIGANLHHFNLGRRIPGFDYGPDGFGTGLTPLHLSDDGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLLLFMVHRLRQRRRERIESLIGANLHHFNLGRRIPGFDYGPDGFGTGLTPLHLSDDGE
360 370 380 390 400 410
430 440 450 460 470 480
pF1KSD GGTFHFHDPPPPYTAYKYPDIGQPDDPPPPYEASIHPDSVFYDPADDDAFEPVEVSLPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGTFHFHDPPPPYTAYKYPDIGQPDDPPPPYEASIHPDSVFYDPADDDAFEPVEVSLPAP
420 430 440 450 460 470
490 500 510 520 530 540
pF1KSD GDGGSEGALLRRLEQPLPTAGASLADLEDSADSSSALLVPPDPAQSGSTPAAEALPGGGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDGGSEGALLRRLEQPLPTAGASLADLEDSADSSSALLVPPDPAQSGSTPAAEALPGGGR
480 490 500 510 520 530
550
pF1KSD HSRSSLNTVV
::::::::::
NP_001 HSRSSLNTVV
540
>>NP_001167004 (OMIM: 192430,600594) integral membrane p (509 aa)
initn: 3475 init1: 3475 opt: 3475 Z-score: 2448.1 bits: 462.6 E(85289): 1.3e-129
Smith-Waterman score: 3536; 92.5% identity (92.5% similar) in 550 aa overlap (1-550:1-509)
10 20 30 40 50 60
pF1KSD MVPKADSGAFLLLFLLVLTVTEPLRPELRCNPGQFACRSGTIQCIPLPWQCDGWATCEDE
:::::::::::::::::::::::::::
NP_001 MVPKADSGAFLLLFLLVLTVTEPLRPE---------------------------------
10 20
70 80 90 100 110 120
pF1KSD SDEANCPEVTGEVRPHHGKEAVDPRQGRARGGDPSHFHAVNVAQPVRFSSFLGKCPTGWH
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 --------VTGEVRPHHGKEAVDPRQGRARGGDPSHFHAVNVAQPVRFSSFLGKCPTGWH
30 40 50 60 70
130 140 150 160 170 180
pF1KSD HYEGTASCYRVYLSGENYWDAAQTCQRLNGSLATFSTDQELRFVLAQEWDQPERSFGWKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HYEGTASCYRVYLSGENYWDAAQTCQRLNGSLATFSTDQELRFVLAQEWDQPERSFGWKD
80 90 100 110 120 130
190 200 210 220 230 240
pF1KSD QRKLWVGYQYVITGRNRSLEGRWEVAFKGSSEVFLPPDPIFASAMSENDNVFCAQLQCFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRKLWVGYQYVITGRNRSLEGRWEVAFKGSSEVFLPPDPIFASAMSENDNVFCAQLQCFH
140 150 160 170 180 190
250 260 270 280 290 300
pF1KSD FPTLRHHDLHSWHAESCYEKSSFLCKRSQTCVDIKDNVVDEGFYFTPKGDDPCLSCTCHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPTLRHHDLHSWHAESCYEKSSFLCKRSQTCVDIKDNVVDEGFYFTPKGDDPCLSCTCHG
200 210 220 230 240 250
310 320 330 340 350 360
pF1KSD GEPEMCVAALCERPQGCQQYRKDPKECCKFMCLDPDGNSLFDSMASGMRLVVSCISSFLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEPEMCVAALCERPQGCQQYRKDPKECCKFMCLDPDGNSLFDSMASGMRLVVSCISSFLI
260 270 280 290 300 310
370 380 390 400 410 420
pF1KSD LSLLLFMVHRLRQRRRERIESLIGANLHHFNLGRRIPGFDYGPDGFGTGLTPLHLSDDGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLLLFMVHRLRQRRRERIESLIGANLHHFNLGRRIPGFDYGPDGFGTGLTPLHLSDDGE
320 330 340 350 360 370
430 440 450 460 470 480
pF1KSD GGTFHFHDPPPPYTAYKYPDIGQPDDPPPPYEASIHPDSVFYDPADDDAFEPVEVSLPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGTFHFHDPPPPYTAYKYPDIGQPDDPPPPYEASIHPDSVFYDPADDDAFEPVEVSLPAP
380 390 400 410 420 430
490 500 510 520 530 540
pF1KSD GDGGSEGALLRRLEQPLPTAGASLADLEDSADSSSALLVPPDPAQSGSTPAAEALPGGGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDGGSEGALLRRLEQPLPTAGASLADLEDSADSSSALLVPPDPAQSGSTPAAEALPGGGR
440 450 460 470 480 490
550
pF1KSD HSRSSLNTVV
::::::::::
NP_001 HSRSSLNTVV
500
>>NP_001167005 (OMIM: 192430,600594) integral membrane p (506 aa)
initn: 3435 init1: 3142 opt: 3432 Z-score: 2418.0 bits: 457.1 E(85289): 6e-128
Smith-Waterman score: 3493; 91.8% identity (91.8% similar) in 550 aa overlap (1-550:1-506)
10 20 30 40 50 60
pF1KSD MVPKADSGAFLLLFLLVLTVTEPLRPELRCNPGQFACRSGTIQCIPLPWQCDGWATCEDE
:::::::::::::::::::::::::::
NP_001 MVPKADSGAFLLLFLLVLTVTEPLRPE---------------------------------
10 20
70 80 90 100 110 120
pF1KSD SDEANCPEVTGEVRPHHGKEAVDPRQGRARGGDPSHFHAVNVAQPVRFSSFLGKCPTGWH
::::::::::::::::::::::::::::::::::::::::: :::::::
NP_001 --------VTGEVRPHHGKEAVDPRQGRARGGDPSHFHAVNVAQPVRFSR---KCPTGWH
30 40 50 60 70
130 140 150 160 170 180
pF1KSD HYEGTASCYRVYLSGENYWDAAQTCQRLNGSLATFSTDQELRFVLAQEWDQPERSFGWKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HYEGTASCYRVYLSGENYWDAAQTCQRLNGSLATFSTDQELRFVLAQEWDQPERSFGWKD
80 90 100 110 120 130
190 200 210 220 230 240
pF1KSD QRKLWVGYQYVITGRNRSLEGRWEVAFKGSSEVFLPPDPIFASAMSENDNVFCAQLQCFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRKLWVGYQYVITGRNRSLEGRWEVAFKGSSEVFLPPDPIFASAMSENDNVFCAQLQCFH
140 150 160 170 180 190
250 260 270 280 290 300
pF1KSD FPTLRHHDLHSWHAESCYEKSSFLCKRSQTCVDIKDNVVDEGFYFTPKGDDPCLSCTCHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPTLRHHDLHSWHAESCYEKSSFLCKRSQTCVDIKDNVVDEGFYFTPKGDDPCLSCTCHG
200 210 220 230 240 250
310 320 330 340 350 360
pF1KSD GEPEMCVAALCERPQGCQQYRKDPKECCKFMCLDPDGNSLFDSMASGMRLVVSCISSFLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEPEMCVAALCERPQGCQQYRKDPKECCKFMCLDPDGNSLFDSMASGMRLVVSCISSFLI
260 270 280 290 300 310
370 380 390 400 410 420
pF1KSD LSLLLFMVHRLRQRRRERIESLIGANLHHFNLGRRIPGFDYGPDGFGTGLTPLHLSDDGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLLLFMVHRLRQRRRERIESLIGANLHHFNLGRRIPGFDYGPDGFGTGLTPLHLSDDGE
320 330 340 350 360 370
430 440 450 460 470 480
pF1KSD GGTFHFHDPPPPYTAYKYPDIGQPDDPPPPYEASIHPDSVFYDPADDDAFEPVEVSLPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGTFHFHDPPPPYTAYKYPDIGQPDDPPPPYEASIHPDSVFYDPADDDAFEPVEVSLPAP
380 390 400 410 420 430
490 500 510 520 530 540
pF1KSD GDGGSEGALLRRLEQPLPTAGASLADLEDSADSSSALLVPPDPAQSGSTPAAEALPGGGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDGGSEGALLRRLEQPLPTAGASLADLEDSADSSSALLVPPDPAQSGSTPAAEALPGGGR
440 450 460 470 480 490
550
pF1KSD HSRSSLNTVV
::::::::::
NP_001 HSRSSLNTVV
500
>>XP_016873225 (OMIM: 133780,144750,166710,259770,601813 (833 aa)
initn: 252 init1: 186 opt: 241 Z-score: 182.3 bits: 44.1 E(85289): 0.002
Smith-Waterman score: 241; 35.9% identity (55.6% similar) in 117 aa overlap (3-115:416-528)
10 20 30
pF1KSD MVPKADSGAFLLLFLLVLTVTEPLRPELRCNP
:. . . :.:. .:: :: : :.:
XP_016 EVSLEEFSAHPCARDNGGCSHICIAKGDGTPRCSCPVHLVLLQNLLTCGEP--P--TCSP
390 400 410 420 430 440
40 50 60 70 80
pF1KSD GQFACRSGTIQCIPLPWQCDGWATCEDESDEANCPEVTGEVRPHHGKEAVDPR---QGRA
:::: .: :.::: :.:::. :.:.::: .:: .. : . :: : .:.:
XP_016 DQFACATGEIDCIPGAWRCDGFPECDDQSDEEGCPVCSAAQFPCARGQCVDLRLRCDGEA
450 460 470 480 490 500
90 100 110 120 130 140
pF1KSD RGGDPSHFHAVN-VAQPVRFSSFLGKCPTGWHHYEGTASCYRVYLSGENYWDAAQTCQRL
: : . . : .: :.:
XP_016 DCQDRSDEADCDAICLPNQFRCASGQCVLIKQQCDSFPDCIDGSDELMCEITKPPSDDSP
510 520 530 540 550 560
>>NP_001278831 (OMIM: 133780,144750,166710,259770,601813 (1034 aa)
initn: 252 init1: 186 opt: 241 Z-score: 181.1 bits: 44.2 E(85289): 0.0024
Smith-Waterman score: 241; 35.9% identity (55.6% similar) in 117 aa overlap (3-115:655-767)
10 20 30
pF1KSD MVPKADSGAFLLLFLLVLTVTEPLRPELRCNP
:. . . :.:. .:: :: : :.:
NP_001 EVSLEEFSAHPCARDNGGCSHICIAKGDGTPRCSCPVHLVLLQNLLTCGEP--P--TCSP
630 640 650 660 670 680
40 50 60 70 80
pF1KSD GQFACRSGTIQCIPLPWQCDGWATCEDESDEANCPEVTGEVRPHHGKEAVDPR---QGRA
:::: .: :.::: :.:::. :.:.::: .:: .. : . :: : .:.:
NP_001 DQFACATGEIDCIPGAWRCDGFPECDDQSDEEGCPVCSAAQFPCARGQCVDLRLRCDGEA
690 700 710 720 730 740
90 100 110 120 130 140
pF1KSD RGGDPSHFHAVN-VAQPVRFSSFLGKCPTGWHHYEGTASCYRVYLSGENYWDAAQTCQRL
: : . . : .: :.:
NP_001 DCQDRSDEADCDAICLPNQFRCASGQCVLIKQQCDSFPDCIDGSDELMCEITKPPSDDSP
750 760 770 780 790 800
>>XP_016873224 (OMIM: 133780,144750,166710,259770,601813 (1072 aa)
initn: 252 init1: 186 opt: 241 Z-score: 180.9 bits: 44.2 E(85289): 0.0024
Smith-Waterman score: 241; 35.9% identity (55.6% similar) in 117 aa overlap (3-115:655-767)
10 20 30
pF1KSD MVPKADSGAFLLLFLLVLTVTEPLRPELRCNP
:. . . :.:. .:: :: : :.:
XP_016 EVSLEEFSAHPCARDNGGCSHICIAKGDGTPRCSCPVHLVLLQNLLTCGEP--P--TCSP
630 640 650 660 670 680
40 50 60 70 80
pF1KSD GQFACRSGTIQCIPLPWQCDGWATCEDESDEANCPEVTGEVRPHHGKEAVDPR---QGRA
:::: .: :.::: :.:::. :.:.::: .:: .. : . :: : .:.:
XP_016 DQFACATGEIDCIPGAWRCDGFPECDDQSDEEGCPVCSAAQFPCARGQCVDLRLRCDGEA
690 700 710 720 730 740
90 100 110 120 130 140
pF1KSD RGGDPSHFHAVN-VAQPVRFSSFLGKCPTGWHHYEGTASCYRVYLSGENYWDAAQTCQRL
: : . . : .: :.:
XP_016 DCQDRSDEADCDAICLPNQFRCASGQCVLIKQQCDSFPDCIDGSDELMCEITKPPSDDSP
750 760 770 780 790 800
>>XP_011543333 (OMIM: 133780,144750,166710,259770,601813 (1600 aa)
initn: 186 init1: 186 opt: 241 Z-score: 178.7 bits: 44.4 E(85289): 0.0033
Smith-Waterman score: 241; 35.9% identity (55.6% similar) in 117 aa overlap (3-115:1245-1357)
10 20 30
pF1KSD MVPKADSGAFLLLFLLVLTVTEPLRPELRCNP
:. . . :.:. .:: :: : :.:
XP_011 EVSLEEFSAHPCARDNGGCSHICIAKGDGTPRCSCPVHLVLLQNLLTCGEP--P--TCSP
1220 1230 1240 1250 1260 1270
40 50 60 70 80
pF1KSD GQFACRSGTIQCIPLPWQCDGWATCEDESDEANCPEVTGEVRPHHGKEAVDPR---QGRA
:::: .: :.::: :.:::. :.:.::: .:: .. : . :: : .:.:
XP_011 DQFACATGEIDCIPGAWRCDGFPECDDQSDEEGCPVCSAAQFPCARGQCVDLRLRCDGEA
1280 1290 1300 1310 1320 1330
90 100 110 120 130 140
pF1KSD RGGDPSHFHAVN-VAQPVRFSSFLGKCPTGWHHYEGTASCYRVYLSGENYWDAAQTCQRL
: : . . : .: :.:
XP_011 DCQDRSDEADCDAICLPNQFRCASGQCVLIKQQCDSFPDCIDGSDELMCEITKPPSDDSP
1340 1350 1360 1370 1380 1390
>>NP_002326 (OMIM: 133780,144750,166710,259770,601813,60 (1615 aa)
initn: 252 init1: 186 opt: 241 Z-score: 178.6 bits: 44.4 E(85289): 0.0033
Smith-Waterman score: 241; 35.9% identity (55.6% similar) in 117 aa overlap (3-115:1236-1348)
10 20 30
pF1KSD MVPKADSGAFLLLFLLVLTVTEPLRPELRCNP
:. . . :.:. .:: :: : :.:
NP_002 EVSLEEFSAHPCARDNGGCSHICIAKGDGTPRCSCPVHLVLLQNLLTCGEP--P--TCSP
1210 1220 1230 1240 1250 1260
40 50 60 70 80
pF1KSD GQFACRSGTIQCIPLPWQCDGWATCEDESDEANCPEVTGEVRPHHGKEAVDPR---QGRA
:::: .: :.::: :.:::. :.:.::: .:: .. : . :: : .:.:
NP_002 DQFACATGEIDCIPGAWRCDGFPECDDQSDEEGCPVCSAAQFPCARGQCVDLRLRCDGEA
1270 1280 1290 1300 1310 1320
90 100 110 120 130 140
pF1KSD RGGDPSHFHAVN-VAQPVRFSSFLGKCPTGWHHYEGTASCYRVYLSGENYWDAAQTCQRL
: : . . : .: :.:
NP_002 DCQDRSDEADCDAICLPNQFRCASGQCVLIKQQCDSFPDCIDGSDELMCEITKPPSDDSP
1330 1340 1350 1360 1370 1380
>>XP_011543332 (OMIM: 133780,144750,166710,259770,601813 (1624 aa)
initn: 252 init1: 186 opt: 241 Z-score: 178.6 bits: 44.4 E(85289): 0.0033
Smith-Waterman score: 241; 35.9% identity (55.6% similar) in 117 aa overlap (3-115:1245-1357)
10 20 30
pF1KSD MVPKADSGAFLLLFLLVLTVTEPLRPELRCNP
:. . . :.:. .:: :: : :.:
XP_011 EVSLEEFSAHPCARDNGGCSHICIAKGDGTPRCSCPVHLVLLQNLLTCGEP--P--TCSP
1220 1230 1240 1250 1260 1270
40 50 60 70 80
pF1KSD GQFACRSGTIQCIPLPWQCDGWATCEDESDEANCPEVTGEVRPHHGKEAVDPR---QGRA
:::: .: :.::: :.:::. :.:.::: .:: .. : . :: : .:.:
XP_011 DQFACATGEIDCIPGAWRCDGFPECDDQSDEEGCPVCSAAQFPCARGQCVDLRLRCDGEA
1280 1290 1300 1310 1320 1330
90 100 110 120 130 140
pF1KSD RGGDPSHFHAVN-VAQPVRFSSFLGKCPTGWHHYEGTASCYRVYLSGENYWDAAQTCQRL
: : . . : .: :.:
XP_011 DCQDRSDEADCDAICLPNQFRCASGQCVLIKQQCDSFPDCIDGSDELMCEITKPPSDDSP
1340 1350 1360 1370 1380 1390
550 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:22:37 2016 done: Thu Nov 3 00:22:38 2016
Total Scan time: 8.590 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]