Result of FASTA (ccds) for
pF1KSDA0170
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0170, 2089 aa
1>>>pF1KSDA0170 2089 - 2089 aa - 2089 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 15.5018+/-0.00139; mu= -23.2724+/- 0.083
mean_var=544.7762+/-113.958, 0's: 0 Z-trim(112.4): 117 B-trim: 0 in 0/52
Lambda= 0.054950
statistics sampled from 13042 (13141) to 13042 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.404), width: 16
Scan time: 6.250
The best scores are: opt bits E(32554)
CCDS34384.1 MDC1 gene_id:9656|Hs108|chr6 (2089) 13800 1110.7 0
>>CCDS34384.1 MDC1 gene_id:9656|Hs108|chr6 (2089 aa)
initn: 13800 init1: 13800 opt: 13800 Z-score: 5928.8 bits: 1110.7 E(32554): 0
Smith-Waterman score: 13800; 99.8% identity (100.0% similar) in 2089 aa overlap (1-2089:1-2089)
10 20 30 40 50 60
pF1KSD MEDTQAIDWDVEEEEETEQSSESLRCNVEPVGRLHIFSGAHGPEKDFPLHLGKNVVGRMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MEDTQAIDWDVEEEEETEQSSESLRCNVEPVGRLHIFSGAHGPEKDFPLHLGKNVVGRMP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DCSVALPFPSISKQHAEIEILAWDKAPILRDCGSLNGTQILRPPKVLSPGVSHRLRDQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DCSVALPFPSISKQHAEIEILAWDKAPILRDCGSLNGTQILRPPKVLSPGVSHRLRDQEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD ILFADLLCQYHRLDVSLPFVSRGPLTVEETPRVQGETQPQRLLLAEDSEEEVDFLSERRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ILFADLLCQYHRLDVSLPFVSRGPLTVEETPRVQGETQPQRLLLAEDSEEEVDFLSERRM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD VKKSRTTSSSVIVPESDEEGHSPVLGGLGPPFAFNLNSDTDVEEGQQPATEEASSAARRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VKKSRTTSSSVIVPESDEEGHSPVLGGLGPPFAFNLNSDTDVEEGQQPATEEASSAARRG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD ATVEAKQSEAEVVTEIQLEKDQPLVKERDNDTKVKRGAGNGVVPAGVILERSQPPGEDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ATVEAKQSEAEVVTEIQLEKDQPLVKERDNDTKVKRGAGNGVVPAGVILERSQPPGEDSD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD TDVDDDSRPPGRPAEVHLERAQPFGFIDSDTDAEEERIPATPVVIPMKKRKIFHGVGTRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TDVDDDSRPPGRPAEVHLERAQPFGFIDSDTDAEEERIPATPVVIPMKKRKIFHGVGTRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD PGAPGLAHLQESQAGSDTDVEEGKAPQAVPLEKSQASMVINSDTDDEEEVSAALTLAHLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PGAPGLAHLQESQAGSDTDVEEGKAPQAVPLEKSQASMVINSDTDDEEEVSAALTLAHLK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD ESQPAIWNRDAEEDMPQRVVLLQRSQTTTERDSDTDVEEEELPVENREAVLKDHTKIRAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ESQPAIWNRDAEEDMPQRVVLLQRSQTTTERDSDTDVEEEELPVENREAVLKDHTKIRAL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD VRAHSEKDQPPFGDSDDSVEADKSSPGIHLERSQASTTVDINTQVEKEVPPGSAIMHIKK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
CCDS34 VRAHSEKDQPPFGDSDDSVEADKSSPGIHLERSQASTTVDINTQVEKEVPPGSAIIHIKK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD HQVSVEGTNQTDVKAVGGPAKLLVVSLEEAWPLHGDCETDAEEGTSLTASVVADVRKSQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HQVSVEGTNQTDVKAVGGPAKLLVVSLEEAWPLHGDCETDAEEGTSLTASVVADVRKSQL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD PAEGDAGAEWAAAVLKQERAHEVGAQGGPPVAQVEQDLPISRENLTDLVVDTDTLGESTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PAEGDAGAEWAAAVLKQERAHEVGAQGGPPVAQVEQDLPISRENLTDLVVDTDTLGESTQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD PQREGAQVPTGREREQHVGGTKDSEDNYGDSEDLDLQATQCFLENQGLEAVQSMEDEPTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PQREGAQVPTGREREQHVGGTKDSEDNYGDSEDLDLQATQCFLENQGLEAVQSMEDEPTQ
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD AFMLTPPQELGPSHCSFQTTGTLDEPWEVLATQPFCLRESEDSETQPFDTHLEAYGPCLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AFMLTPPQELGPSHCSFQTTGTLDEPWEVLATQPFCLRESEDSETQPFDTHLEAYGPCLS
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD PPRAIPGDQHPESPVHTEPMGIQGRGRQTVDKVMGIPKETAERVGPERGPLERETEKLLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PPRAIPGDQHPESPVHTEPMGIQGRGRQTVDKVMGIPKETAERVGPERGPLERETEKLLP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD ERQTDVTGEEELTKGKQDREQKQLLARDTQRQESDKNGESASPERDRESLKVEIETSEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ERQTDVTGEEELTKGKQDREQKQLLARDTQRQESDKNGESASPERDRESLKVEIETSEEI
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD QEKQVQKQTLPSKAFEREVERPVANRECDPAELEEKVPKVILERDTQRGEPEGGSQDQKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QEKQVQKQTLPSKAFEREVERPVANRECDPAELEEKVPKVILERDTQRGEPEGGSQDQKG
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD QASSPTPEPGVGAGDLPGPTSAPVPSGSQSGGRGSPVSPRRHQKGLLNCKMPPAEKASRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QASSPTPEPGVGAGDLPGPTSAPVPSGSQSGGRGSPVSPRRHQKGLLNCKMPPAEKASRI
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD RAAEKVSRGDQESPDACLPPAVPEAPAPPQKPLNSQSQKHLAPPPLLSPLLPSIKPTVRK
::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
CCDS34 RAAEKVSRGDQESPDACLPPTVPEAPAPPQKPLNSQSQKHLAPPPLLSPLLPSIKPTVRK
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KSD TRQDGSQEAPEAPLSSELEPFHPKPKIRTRKSSRMTPFPATSAAPEPHPSTSTAQPVTPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TRQDGSQEAPEAPLSSELEPFHPKPKIRTRKSSRMTPFPATSAAPEPHPSTSTAQPVTPK
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KSD PTSQATRSRTNRSSVKTPEPVVPTAPELQPSTSTDQPVTSEPTSQVTRGRKSRSSVKTPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PTSQATRSRTNRSSVKTPEPVVPTAPELQPSTSTDQPVTSEPTSQVTRGRKSRSSVKTPE
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KSD TVVPTALELQPSTSTDRPVTSEPTSQATRGRKNRSSVKTPEPVVPTAPELQPSTSTDQPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TVVPTALELQPSTSTDRPVTSEPTSQATRGRKNRSSVKTPEPVVPTAPELQPSTSTDQPV
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KSD TSEPTYQATRGRKNRSSVKTPEPVVPTAPELRPSTSTDRPVTPKPTSRTTRSRTNMSSVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TSEPTYQATRGRKNRSSVKTPEPVVPTAPELRPSTSTDRPVTPKPTSRTTRSRTNMSSVK
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KSD TPETVVPTAPELQISTSTDQPVTPKPTSRTTRSRTNMSSVKNPESTVPIAPELPPSTSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TPETVVPTAPELQISTSTDQPVTPKPTSRTTRSRTNMSSVKNPESTVPIAPELPPSTSTE
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KSD QPVTPEPTSRATRGRKNRSSGKTPETLVPTAPKLEPSTSTDQPVTPEPTSQATRGRTNRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QPVTPEPTSRATRGRKNRSSGKTPETLVPTAPKLEPSTSTDQPVTPEPTSQATRGRTNRS
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KSD SVKTPETVVPTAPELQPSTSTDQPVTPEPTSQATRGRTDRSSVKTPETVVPTAPELQASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SVKTPETVVPTAPELQPSTSTDQPVTPEPTSQATRGRTDRSSVKTPETVVPTAPELQASA
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KSD STDQPVTSEPTSRTTRGRKNRSSVKTPETVVPAAPELQPPTSTDRPVTPEPTSRATRGRT
::::::::::::::::::::::::::::::::::::::: ::::.:::::::::::::::
CCDS34 STDQPVTSEPTSRTTRGRKNRSSVKTPETVVPAAPELQPSTSTDQPVTPEPTSRATRGRT
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KSD NRSSVKTPESIVPIAPELQPSTSRNQLVTPEPTSRATRCRTNRSSVKTPEPVVPTAPEPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NRSSVKTPESIVPIAPELQPSTSRNQLVTPEPTSRATRCRTNRSSVKTPEPVVPTAPEPH
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KSD PTTSTDQPVTPKLTSRATRRKTNRSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PTTSTDQPVTPKLTSRATRRKTNRSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQ
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KSD SKTLRSSTVRAMPVPTTPEFQSPVTTDQPISPEPITQPSCIKRQRAAGNPGSLAAPIDHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SKTLRSSTVRAMPVPTTPEFQSPVTTDQPISPEPITQPSCIKRQRAAGNPGSLAAPIDHK
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KSD PCSAPLEPKSQASRNQRWGAVRAAESLTAIPEPASPQLLETPIHASQIQKVEPAGRSRFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PCSAPLEPKSQASRNQRWGAVRAAESLTAIPEPASPQLLETPIHASQIQKVEPAGRSRFT
1750 1760 1770 1780 1790 1800
1810 1820 1830 1840 1850 1860
pF1KSD PELQPKASQSRKRSLATMDSPPHQKQPQRGEVSQKTVIIKEEEEDTAEKPGKEEDVVTPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PELQPKASQSRKRSLATMDSPPHQKQPQRGEVSQKTVIIKEEEEDTAEKPGKEEDVVTPK
1810 1820 1830 1840 1850 1860
1870 1880 1890 1900 1910 1920
pF1KSD PGKRKRDQAEEEPNRIPSRSLRRTKLNQESTAPKVLFTGVVDARGERAVLALGGSLAGSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PGKRKRDQAEEEPNRIPSRSLRRTKLNQESTAPKVLFTGVVDARGERAVLALGGSLAGSA
1870 1880 1890 1900 1910 1920
1930 1940 1950 1960 1970 1980
pF1KSD AEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFFLPPDEYVVTDPEQEKNFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFFLPPDEYVVTDPEQEKNFG
1930 1940 1950 1960 1970 1980
1990 2000 2010 2020 2030 2040
pF1KSD FSLQDALSRARERRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FSLQDALSRARERRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVVI
1990 2000 2010 2020 2030 2040
2050 2060 2070 2080
pF1KSD TCPQDFPHCSIPLRVGLPLLSPEFLLTGVLKQEAKPEAFVLSPLEMSST
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TCPQDFPHCSIPLRVGLPLLSPEFLLTGVLKQEAKPEAFVLSPLEMSST
2050 2060 2070 2080
2089 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:24:54 2016 done: Thu Nov 3 00:24:55 2016
Total Scan time: 6.250 Total Display time: 0.210
Function used was FASTA [36.3.4 Apr, 2011]