FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0180, 388 aa
  1>>>pF1KSDA0180 388 - 388 aa - 388 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.2404+/-0.000306; mu= 23.6815+/- 0.019
 mean_var=69.9493+/-14.235, 0's: 0 Z-trim(116.1): 17  B-trim: 0 in 0/54
 Lambda= 0.153350
 statistics sampled from 27078 (27087) to 27078 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.318), width:  16
 Scan time:  8.580

The best scores are:                                      opt bits E(85289)
NP_056167 (OMIM: 607491,615327) GDP-fucose protein ( 388) 2714 609.3 4.9e-174
NP_758436 (OMIM: 607491,615327) GDP-fucose protein ( 194) 1305 297.2 2.2e-80


>>NP_056167 (OMIM: 607491,615327) GDP-fucose protein O-f  (388 aa)
 initn: 2714 init1: 2714 opt: 2714  Z-score: 3245.4  bits: 609.3 E(85289): 4.9e-174
Smith-Waterman score: 2714; 100.0% identity (100.0% similar) in 388 aa overlap (1-388:1-388)

               10        20        30        40        50        60
pF1KSD MGAAAWARPLSVSFLLLLLPLPGMPAGSWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MGAAAWARPLSVSFLLLLLPLPGMPAGSWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LNRTLAVPPWIEYQHHKPPFTNLHVSYQKYFKLEPLQAYHRVISLEDFMEKLAPTHWPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LNRTLAVPPWIEYQHHKPPFTNLHVSYQKYFKLEPLQAYHRVISLEDFMEKLAPTHWPPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KRVAYCFEVAAQRSPDKKTCPMKEGNPFGPFWDQFHVSFNKSELFTGISFSASYREQWSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 KRVAYCFEVAAQRSPDKKTCPMKEGNPFGPFWDQFHVSFNKSELFTGISFSASYREQWSQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD RFSPKEHPVLALPGAPAQFPVLEEHRPLQKYMVWSDEMVKTGEAQIHAHLVRPYVGIHLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 RFSPKEHPVLALPGAPAQFPVLEEHRPLQKYMVWSDEMVKTGEAQIHAHLVRPYVGIHLR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD IGSDWKNACAMLKDGTAGSHFMASPQCVGYSRSTAAPLTMTMCLPDLKEIQRAVKLWVRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 IGSDWKNACAMLKDGTAGSHFMASPQCVGYSRSTAAPLTMTMCLPDLKEIQRAVKLWVRS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD LDAQSVYVATDSESYVPELQQLFKGKVKVVSLKPEVAQVDLYILGQADHFIGNCVSSFTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LDAQSVYVATDSESYVPELQQLFKGKVKVVSLKPEVAQVDLYILGQADHFIGNCVSSFTA
              310       320       330       340       350       360

              370       380        
pF1KSD FVKRERDLQGRPSSFFGMDRPPKLRDEF
       ::::::::::::::::::::::::::::
NP_056 FVKRERDLQGRPSSFFGMDRPPKLRDEF
              370       380        

>>NP_758436 (OMIM: 607491,615327) GDP-fucose protein O-f  (194 aa)
 initn: 1304 init1: 1304 opt: 1305  Z-score: 1564.3  bits: 297.2 E(85289): 2.2e-80
Smith-Waterman score: 1305; 94.8% identity (96.4% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KSD MGAAAWARPLSVSFLLLLLPLPGMPAGSWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_758 MGAAAWARPLSVSFLLLLLPLPGMPAGSWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LNRTLAVPPWIEYQHHKPPFTNLHVSYQKYFKLEPLQAYHRVISLEDFMEKLAPTHWPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_758 LNRTLAVPPWIEYQHHKPPFTNLHVSYQKYFKLEPLQAYHRVISLEDFMEKLAPTHWPPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD KRVAYCFEVAAQRSPDKKTCPMKEGNPFGPFWDQFHVSFNKSELFTGISFSASYREQWSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_758 KRVAYCFEVAAQRSPDKKTCPMKEGNPFGPFWDQFHVSFNKSELFTGISFSASYREQWSQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD RFSPKEHPVLALPGAPAQFPVLEEHRPLQKYMVWSDEMVKTGEAQIHAHLVRPYVGIHLR
       :   .   .: .:                                               
NP_758 RRENHSCVTLLFPR                                              
              190                                                  




388 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:29:31 2016 done: Thu Nov  3 00:29:32 2016
 Total Scan time:  8.580 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]