FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0186, 196 aa
  1>>>pF1KSDA0186 196 - 196 aa - 196 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3911+/-0.00071; mu= 12.2905+/- 0.043
 mean_var=58.9143+/-11.664, 0's: 0 Z-trim(108.2): 12  B-trim: 7 in 1/51
 Lambda= 0.167095
 statistics sampled from 10056 (10063) to 10056 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.309), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS33451.1 GINS1 gene_id:9837|Hs108|chr20         ( 196) 1330 328.6 1.6e-90


>>CCDS33451.1 GINS1 gene_id:9837|Hs108|chr20              (196 aa)
 initn: 1330 init1: 1330 opt: 1330  Z-score: 1738.8  bits: 328.6 E(32554): 1.6e-90
Smith-Waterman score: 1330; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KSD MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD TIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TIKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LATYMRSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LATYMRSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGEFEVDDGTSVLLKKNSQHFLPRW
              130       140       150       160       170       180

              190      
pF1KSD KCEQLIRQGVLEHILS
       ::::::::::::::::
CCDS33 KCEQLIRQGVLEHILS
              190      




196 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:32:29 2016 done: Thu Nov  3 00:32:29 2016
 Total Scan time:  1.940 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]