FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0194, 1292 aa
  1>>>pF1KSDA0194 1292 - 1292 aa - 1292 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9096+/- 0.001; mu= 10.8640+/- 0.060
 mean_var=157.4650+/-31.739, 0's: 0 Z-trim(110.0): 30  B-trim: 4 in 1/49
 Lambda= 0.102207
 statistics sampled from 11269 (11287) to 11269 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.347), width:  16
 Scan time:  4.680

The best scores are:                                      opt bits E(32554)
CCDS54935.1 HMGXB3 gene_id:22993|Hs108|chr5        (1292) 8555 1274.5       0


>>CCDS54935.1 HMGXB3 gene_id:22993|Hs108|chr5             (1292 aa)
 initn: 8555 init1: 8555 opt: 8555  Z-score: 6822.0  bits: 1274.5 E(32554):    0
Smith-Waterman score: 8555; 99.9% identity (100.0% similar) in 1292 aa overlap (1-1292:1-1292)

               10        20        30        40        50        60
pF1KSD MDASYDGTEVTVVMEEIEEAYCYTSPGPPKKKKKYKIHGEKTKKPRSAYLLYYYDIYLKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MDASYDGTEVTVVMEEIEEAYCYTSPGPPKKKKKYKIHGEKTKKPRSAYLLYYYDIYLKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD QQELPHLPQSEINKKISESWRLLSVAERSYYLEKAKLEKEGLDPNSKLSALTAVVPDIPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QQELPHLPQSEINKKISESWRLLSVAERSYYLEKAKLEKEGLDPNSKLSALTAVVPDIPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD FRKILPRSDYIIIPKSSLQEDRSCPQLELCVAQNQMSPKGPPLVSNTAPETVPSHAGMAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FRKILPRSDYIIIPKSSLQEDRSCPQLELCVAQNQMSPKGPPLVSNTAPETVPSHAGMAE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD QCLAVEALAEEVGALTQSGAVQEIATSEILSQDVLLEDASLEVGESHQPYQTSLVIEETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QCLAVEALAEEVGALTQSGAVQEIATSEILSQDVLLEDASLEVGESHQPYQTSLVIEETL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD VNGSPDLPTGSLAVPHPQVGESVSVVTVMRDSSESSSSAPATQFIMLPLPAYSVVENPTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VNGSPDLPTGSLAVPHPQVGESVSVVTVMRDSSESSSSAPATQFIMLPLPAYSVVENPTS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD IKLTTTYTRRGHGTCTSPGCSFTYVTRHKPPKCPTCGNFLGGKWIPKEKPAKVKVELASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IKLTTTYTRRGHGTCTSPGCSFTYVTRHKPPKCPTCGNFLGGKWIPKEKPAKVKVELASG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD VSSKGSVVKRNQQPVTTEQNSSKENASKLTLENSEAVSQLLNVAPPREVGEESEWEEVII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VSSKGSVVKRNQQPVTTEQNSSKENASKLTLENSEAVSQLLNVAPPREVGEESEWEEVII
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD SDAHVLVKEAPGNCGTAVTKTPVVKSGVQPEVTLGTTDNDSPGADVPTPSEGTSTSSPLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SDAHVLVKEAPGNCGTAVTKTPVVKSGVQPEVTLGTTDNDSPGADVPTPSEGTSTSSPLP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD APKKPTGVDLLTPGSRAPELKGRARGKPSLLAAARPMRAILPAPVNVGRGSSMGLPRARQ
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 APKKPTGADLLTPGSRAPELKGRARGKPSLLAAARPMRAILPAPVNVGRGSSMGLPRARQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD AFSLSDKTPSVRTCGLKPSTLKQLGQPIQQPSGPGEVKLPSGPSNRTSQVKVVEVKPDMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AFSLSDKTPSVRTCGLKPSTLKQLGQPIQQPSGPGEVKLPSGPSNRTSQVKVVEVKPDMF
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD PPYKYSCTVTLDLGLATSRGRGKCKNPSCSYVYTNRHKPRICPSCGVNLAKDRTEKTTKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PPYKYSCTVTLDLGLATSRGRGKCKNPSCSYVYTNRHKPRICPSCGVNLAKDRTEKTTKA
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD IEVSSPLPDVLNATEPLSTAQREIQRQSTLQLLRKVLQIPENESELAEVFALIHELNSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IEVSSPLPDVLNATEPLSTAQREIQRQSTLQLLRKVLQIPENESELAEVFALIHELNSSR
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD LILSNVSEETVTIEQTSWSNYYESPSTQCLLCSSPLFKGGQNSLAGPQECWLLTASRLQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LILSNVSEETVTIEQTSWSNYYESPSTQCLLCSSPLFKGGQNSLAGPQECWLLTASRLQT
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD VTAQVKMCLNPHCLALHSFIDIYTGLFNVGNKLLVSLDLLFAIRNQIKLGEDPRVSINVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VTAQVKMCLNPHCLALHSFIDIYTGLFNVGNKLLVSLDLLFAIRNQIKLGEDPRVSINVV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD LKSVQEQTEKTLTSEELSQLQELLCNGYWAFECLTVRDYNDMICGICGVAPKVEMAQRSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LKSVQEQTEKTLTSEELSQLQELLCNGYWAFECLTVRDYNDMICGICGVAPKVEMAQRSE
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD ENVLALKSVEFTWPEFLGSNEVNVEDFWATMETEVIEQVAFPASIPITKFDASVIAPFFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ENVLALKSVEFTWPEFLGSNEVNVEDFWATMETEVIEQVAFPASIPITKFDASVIAPFFP
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD PLMRGAVVVNTEKDKNLDVQPVPGSGSALVRLLQEGTCKLDEIGSYSEEKLQHLLRQCGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PLMRGAVVVNTEKDKNLDVQPVPGSGSALVRLLQEGTCKLDEIGSYSEEKLQHLLRQCGI
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD PFGAEDSKDQLCFSLLALYESVQNGARAIRPPRHFTGGKIYKVCPHQVVCGSKYLVRGES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PFGAEDSKDQLCFSLLALYESVQNGARAIRPPRHFTGGKIYKVCPHQVVCGSKYLVRGES
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KSD ARDHVDLLASSRHWPPVYVVDMATSVALCADLCYPELTNQMWGRNQGCFSSPTEPPVSVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ARDHVDLLASSRHWPPVYVVDMATSVALCADLCYPELTNQMWGRNQGCFSSPTEPPVSVS
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KSD CPELLDQHYTVDMTETEHSIQHPVTKTATRRIVHAGLQPNPGDPSAGHHSLALCPELAPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CPELLDQHYTVDMTETEHSIQHPVTKTATRRIVHAGLQPNPGDPSAGHHSLALCPELAPY
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KSD ATILASIVDSKPNGVRQRPIAFDNATHYYLYNRLMDFLTSREIVNRQIHDIVQSCQPGEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ATILASIVDSKPNGVRQRPIAFDNATHYYLYNRLMDFLTSREIVNRQIHDIVQSCQPGEV
             1210      1220      1230      1240      1250      1260

             1270      1280      1290  
pF1KSD VIRDTLYRLGVAQIKTETEEEGEEEEVAAVAE
       ::::::::::::::::::::::::::::::::
CCDS54 VIRDTLYRLGVAQIKTETEEEGEEEEVAAVAE
             1270      1280      1290  




1292 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:27:20 2016 done: Thu Nov  3 18:27:20 2016
 Total Scan time:  4.680 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]