(Circular) (Six-base) MAPSORT of: pF1KSDA0194.seq Check: 4693 from: 1 to: 7013 pF1KSDA0194 7013 bp With 182 enzymes: SgfI * June 20, 2008 10:33 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2928 3124 3173 2928 Size: 196 49 6768 Fragments arranged by size: 6768 196 49 AccI GT'mk_AC Cuts at: 2021 4051 2021 Size: 2030 4983 Acc65I G'GTAC_C Cuts at: 4029 4029 Size: 7013 AclI AA'CG_TT Cuts at: 6853 6853 Size: 7013 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1813 1828 2668 2863 4838 5270 6017 6285 1813 Size: 15 840 195 1975 432 747 268 2541 Fragments arranged by size: 2541 1975 840 747 432 268 195 15 AflIII A'CryG_T Cuts at: 4365 5469 6446 4365 Size: 1104 977 4932 Fragments arranged by size: 4932 1104 977 AgeI A'CCGG_T Cuts at: 5401 5401 Size: 7013 AhdI GACnn_n'nnGTC Cuts at: 1787 1787 Size: 7013 AleI CACnn'nnGTG Cuts at: 1119 3439 1119 Size: 2320 4693 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 684 1744 2230 684 Size: 1060 486 5467 Fragments arranged by size: 5467 1060 486 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 577 609 1006 1038 577 Size: 32 397 32 6552 Fragments arranged by size: 6552 397 32 32 AlwNI CAG_nnn'CTG Cuts at: 672 724 1326 2202 2470 2712 3073 3165 3592 Size: 52 602 876 268 242 361 92 427 Cuts at: 3592 4318 5885 672 Size: 726 1567 1800 Fragments arranged by size: 1800 1567 876 726 602 427 361 268 242 92 52 ApaI G_GGCC'C Cuts at: 2426 2426 Size: 7013 ApaLI G'TGCA_C Cuts at: 5783 5783 Size: 7013 ApoI r'AATT_y Cuts at: 1263 1302 2045 2869 2971 4017 6366 6622 1263 Size: 39 743 824 102 1046 2349 256 1654 Fragments arranged by size: 2349 1654 1046 824 743 256 102 39 AseI AT'TA_AT Cuts at: 20 20 Size: 7013 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 7013 AvaI C'yCGr_G Cuts at: 1417 4033 1417 Size: 2616 4397 AvrII C'CTAG_G Cuts at: 1143 1143 Size: 7013 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 137 170 1421 1454 137 Size: 33 1251 33 5696 Fragments arranged by size: 5696 1251 33 33 BamHI G'GATC_C Cuts at: 432 1157 4038 432 Size: 725 2881 3407 Fragments arranged by size: 3407 2881 725 BanI G'GyrC_C Cuts at: 3112 3686 3717 4029 4443 4691 4726 3112 Size: 574 31 312 414 248 35 5399 Fragments arranged by size: 5399 574 414 312 248 35 31 BanII G_rGCy'C Cuts at: 317 708 1617 2119 2153 2426 2881 3557 4027 Size: 391 909 502 34 273 455 676 470 Cuts at: 4027 5057 317 Size: 1030 2273 Fragments arranged by size: 2273 1030 909 676 502 470 455 391 273 34 BbeI G_GCGC'C Cuts at: 4447 4695 4447 Size: 248 6765 BbsI GAAGACnn'nnnn_ Cuts at: 2244 2680 3206 2244 Size: 436 526 6051 Fragments arranged by size: 6051 526 436 BbvCI CC'TCA_GC Cuts at: 560 692 754 2246 560 Size: 132 62 1492 5327 Fragments arranged by size: 5327 1492 132 62 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 2023 2057 2023 Size: 34 6979 BciVI GTATCCnnnnn_n' Cuts at: 4911 5672 7013 4911 Size: 761 1341 4911 Fragments arranged by size: 4911 1341 761 BclI T'GATC_A Cuts at: 1379 4533 1379 Size: 3154 3859 BglI GCCn_nnn'nGGC Cuts at: 653 1744 3994 653 Size: 1091 2250 3672 Fragments arranged by size: 3672 2250 1091 BglII A'GATC_T Cuts at: 4528 6565 4528 Size: 2037 4976 BlpI GC'TnA_GC Cuts at: 2695 4125 2695 Size: 1430 5583 Bme1580I G_kGCm'C Cuts at: 644 890 1126 2426 3115 3319 3369 3689 3709 Size: 246 236 1300 689 204 50 320 20 Cuts at: 3709 4638 4731 5787 644 Size: 929 93 1056 1870 Fragments arranged by size: 1870 1300 1056 929 689 320 246 236 204 93 50 20 BmgBI CAC'GTC Cuts at: 3283 3437 3283 Size: 154 6859 BmrI ACTGGGnnnn_n' Cuts at: 708 1690 3607 3671 4225 4306 4641 6785 708 Size: 982 1917 64 554 81 335 2144 936 Fragments arranged by size: 2144 1917 982 936 554 335 81 64 BmtI G_CTAG'C Cuts at: 2839 2839 Size: 7013 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 575 969 2133 2349 3153 5380 575 Size: 394 1164 216 804 2227 2208 Fragments arranged by size: 2227 2208 1164 804 394 216 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1318 1532 1536 1601 3088 1318 Size: 214 4 65 1487 5243 Fragments arranged by size: 5243 1487 214 65 4 Bpu10I CC'TnA_GC Cuts at: 560 692 754 2155 2246 3169 560 Size: 132 62 1401 91 923 4404 Fragments arranged by size: 4404 1401 923 132 91 62 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 4189 5068 5560 5858 4189 Size: 879 492 298 5344 Fragments arranged by size: 5344 879 492 298 BsaI GGTCTCn'nnnn_ Cuts at: 832 2545 6717 832 Size: 1713 4172 1128 Fragments arranged by size: 4172 1713 1128 BsaAI yAC'GTr Cuts at: 4005 4366 4005 Size: 361 6652 BsaBI GATnn'nnATC Cuts at: 6 4527 6564 6 Size: 4521 2037 455 Fragments arranged by size: 4521 2037 455 BsaHI Gr'CG_yC Cuts at: 1205 1447 4444 4692 5394 6890 1205 Size: 242 2997 248 702 1496 1328 Fragments arranged by size: 2997 1496 1328 702 248 242 BsaWI w'CCGG_w Cuts at: 471 548 2081 4202 4723 5401 5675 5822 6233 Size: 77 1533 2121 521 678 274 147 411 Cuts at: 6233 471 Size: 1251 Fragments arranged by size: 2121 1533 1251 678 521 411 274 147 77 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 848 878 1006 1036 1351 1381 1505 1535 2701 Size: 30 128 30 315 30 124 30 1166 Cuts at: 2701 2731 3011 3041 848 Size: 30 280 30 4820 Fragments arranged by size: 4820 1166 315 280 128 124 30 30 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 402 599 709 945 1328 1372 2323 2704 2832 Size: 197 110 236 383 44 951 381 128 Cuts at: 2832 2839 3032 3976 3979 3994 402 Size: 7 193 944 3 15 3421 Fragments arranged by size: 3421 951 944 383 381 236 197 193 128 110 44 15 7 3 BseYI C'CCAG_C Cuts at: 643 1815 2053 2419 3682 4438 5196 5773 6269 Size: 1172 238 366 1263 756 758 577 496 Cuts at: 6269 643 Size: 1387 Fragments arranged by size: 1387 1263 1172 758 756 577 496 366 238 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 325 437 944 1489 1929 2497 2677 3082 325 Size: 112 507 545 440 568 180 405 4256 Fragments arranged by size: 4256 568 545 507 440 405 180 112 BsiEI CG_ry'CG Cuts at: 104 4555 4601 5809 104 Size: 4451 46 1208 1308 Fragments arranged by size: 4451 1308 1208 46 BsiHKAI G_wGCw'C Cuts at: 317 770 1087 1617 1638 2119 2161 3557 3599 Size: 453 317 530 21 481 42 1396 42 Cuts at: 3599 4027 4805 4995 5787 317 Size: 428 778 190 792 1543 Fragments arranged by size: 1543 1396 792 778 530 481 453 428 317 190 42 42 21 BsmI GAATG_Cn' Cuts at: 2145 2145 Size: 7013 BsmBI CGTCTCn'nnnn_ Cuts at: 1212 1212 Size: 7013 Bsp1286I G_dGCh'C Cuts at: 317 644 708 770 890 1087 1126 1617 1638 Size: 327 64 62 120 197 39 491 21 Cuts at: 1638 2119 2153 2161 2426 2881 3115 3319 3369 Size: 481 34 8 265 455 234 204 50 Cuts at: 3369 3557 3599 3689 3709 4027 4638 4731 4805 Size: 188 42 90 20 318 611 93 74 Cuts at: 4805 4995 5057 5787 317 Size: 190 62 730 1543 Fragments arranged by size: 1543 730 611 491 481 455 327 318 265 234 204 197 190 188 120 93 90 74 64 62 62 50 42 39 34 21 20 8 BspEI T'CCGG_A Cuts at: 471 6233 471 Size: 5762 1251 BspHI T'CATG_A Cuts at: 929 2265 3011 6189 929 Size: 1336 746 3178 1753 Fragments arranged by size: 3178 1753 1336 746 BspMI ACCTGCnnnn'nnnn_ Cuts at: 1601 2928 3124 3173 3392 4063 4277 4579 4960 Size: 1327 196 49 219 671 214 302 381 Cuts at: 4960 1601 Size: 3654 Fragments arranged by size: 3654 1327 671 381 302 219 214 196 49 BsrBI CCG'CTC Cuts at: 50 5305 5359 6843 7008 50 Size: 5255 54 1484 165 55 Fragments arranged by size: 5255 1484 165 55 54 BsrDI GCAATG_nn' Cuts at: 2727 3782 4925 2727 Size: 1055 1143 4815 Fragments arranged by size: 4815 1143 1055 BsrFI r'CCGG_y Cuts at: 5011 5192 5401 5011 Size: 181 209 6623 Fragments arranged by size: 6623 209 181 BsrGI T'GTAC_A Cuts at: 726 3249 3879 726 Size: 2523 630 3860 Fragments arranged by size: 3860 2523 630 BssSI C'ACGA_G Cuts at: 5284 5642 5284 Size: 358 6655 BstAPI GCAn_nnn'nTGC Cuts at: 460 2202 2712 2950 3165 4390 460 Size: 1742 510 238 215 1225 3083 Fragments arranged by size: 3083 1742 1225 510 238 215 BstBI TT'CG_AA Cuts at: 110 5374 110 Size: 5264 1749 BstEII G'GTnAC_C Cuts at: 3670 3670 Size: 7013 BstXI CCAn_nnnn'nTGG Cuts at: 3441 3441 Size: 7013 BstYI r'GATC_y Cuts at: 1 432 494 749 1157 2174 3866 4038 4505 Size: 431 62 255 408 1017 1692 172 467 Cuts at: 4505 4528 4863 5109 6121 6207 6219 6565 1 Size: 23 335 246 1012 86 12 346 449 Fragments arranged by size: 1692 1017 1012 467 449 431 408 346 335 255 246 172 86 62 23 12 Bsu36I CC'TnA_GG Cuts at: 1475 1475 Size: 7013 BtgI C'CryG_G Cuts at: 125 1059 125 Size: 934 6079 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 4963 5144 5307 4963 Size: 181 163 6669 Fragments arranged by size: 6669 181 163 BtsI GCAGTG_nn' Cuts at: 623 673 2191 2374 3084 3090 3181 3998 4256 Size: 50 1518 183 710 6 91 817 258 Cuts at: 4256 623 Size: 3380 Fragments arranged by size: 3380 1518 817 710 258 183 91 50 6 DraI TTT'AAA Cuts at: 4012 4012 Size: 7013 DraIII CAC_nnn'GTG Cuts at: 2369 2369 Size: 7013 DrdI GACnn_nn'nnGTC Cuts at: 4719 5577 4719 Size: 858 6155 EaeI y'GGCC_r Cuts at: 380 3406 3431 3986 4598 4772 5163 5190 6535 Size: 3026 25 555 612 174 391 27 1345 Cuts at: 6535 380 Size: 858 Fragments arranged by size: 3026 1345 858 612 555 391 174 27 25 EagI C'GGCC_G Cuts at: 4598 4598 Size: 7013 EarI CTCTTCn'nnn_ Cuts at: 830 1215 2839 3143 3399 3971 5036 5246 830 Size: 385 1624 304 256 572 1065 210 2597 Fragments arranged by size: 2597 1624 1065 572 385 304 256 210 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 3760 5221 5531 5677 6823 3760 Size: 1461 310 146 1146 3950 Fragments arranged by size: 3950 1461 1146 310 146 EcoICRI GAG'CTC Cuts at: 315 1615 2117 3555 4025 315 Size: 1300 502 1438 470 3303 Fragments arranged by size: 3303 1438 1300 502 470 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1318 1532 1536 1601 1813 1828 2668 2863 3088 Size: 214 4 65 212 15 840 195 225 Cuts at: 3088 4838 5270 6017 6285 1318 Size: 1750 432 747 268 2046 Fragments arranged by size: 2046 1750 840 747 432 268 225 214 212 195 65 15 4 EcoNI CCTnn'n_nnAGG Cuts at: 541 691 757 1776 3093 541 Size: 150 66 1019 1317 4461 Fragments arranged by size: 4461 1317 1019 150 66 EcoO109I rG'GnC_Cy Cuts at: 604 684 2423 2619 4152 604 Size: 80 1739 196 1533 3465 Fragments arranged by size: 3465 1739 1533 196 80 EcoRI G'AATT_C Cuts at: 1302 2869 4017 1302 Size: 1567 1148 4298 Fragments arranged by size: 4298 1567 1148 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 5032 5032 Size: 7013 FspI TGC'GCA Cuts at: 2206 4794 2206 Size: 2588 4425 HaeII r_GCGC'y Cuts at: 2184 4447 4695 5717 6696 2184 Size: 2263 248 1022 979 2501 Fragments arranged by size: 2501 2263 1022 979 248 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 424 456 898 930 1773 1805 2218 2250 2344 Size: 32 442 32 843 32 413 32 94 Cuts at: 2344 2376 2618 2650 3011 3043 4855 4885 4887 Size: 32 242 32 361 32 1812 30 2 Cuts at: 4887 4917 424 Size: 30 2520 Fragments arranged by size: 2520 1812 843 442 413 361 242 94 32 32 32 32 32 32 32 30 30 2 HincII GTy'rAC Cuts at: 1590 1701 2067 3033 4052 1590 Size: 111 366 966 1019 4551 Fragments arranged by size: 4551 1019 966 366 111 HindIII A'AGCT_T Cuts at: 3121 3121 Size: 7013 HpaI GTT'AAC Cuts at: 1701 2067 1701 Size: 366 6647 KasI G'GCGC_C Cuts at: 4443 4691 4443 Size: 248 6765 KpnI G_GTAC'C Cuts at: 4033 4033 Size: 7013 MluI A'CGCG_T Cuts at: 6446 6446 Size: 7013 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 343 644 1901 2321 5684 5868 343 Size: 301 1257 420 3363 184 1488 Fragments arranged by size: 3363 1488 1257 420 301 184 MscI TGG'CCA Cuts at: 3433 4774 3433 Size: 1341 5672 MslI CAynn'nnrTG Cuts at: 1119 3439 5002 5129 1119 Size: 2320 1563 127 3003 Fragments arranged by size: 3003 2320 1563 127 MspA1I CmG'CkG Cuts at: 1815 1943 2057 2199 2703 3777 4124 4438 4798 Size: 128 114 142 504 1074 347 314 360 Cuts at: 4798 5811 6056 1815 Size: 1013 245 2772 Fragments arranged by size: 2772 1074 1013 504 360 347 314 245 142 128 114 NaeI GCC'GGC Cuts at: 5194 5194 Size: 7013 NarI GG'CG_CC Cuts at: 4444 4692 4444 Size: 248 6765 NcoI C'CATG_G Cuts at: 125 1059 125 Size: 934 6079 NdeI CA'TA_TG Cuts at: 138 1095 138 Size: 957 6056 NgoMIV G'CCGG_C Cuts at: 5192 5192 Size: 7013 NheI G'CTAG_C Cuts at: 2835 2835 Size: 7013 NspI r_CATG'y Cuts at: 1070 4066 4566 5473 1070 Size: 2996 500 907 2610 Fragments arranged by size: 2996 2610 907 500 PasI CC'CwG_GG Cuts at: 1078 1603 1733 1078 Size: 525 130 6358 Fragments arranged by size: 6358 525 130 PciI A'CATG_T Cuts at: 5469 5469 Size: 7013 PflMI CCAn_nnn'nTGG Cuts at: 1401 2505 3073 3327 3696 1401 Size: 1104 568 254 369 4718 Fragments arranged by size: 4718 1104 568 369 254 PfoI T'CCnGG_A Cuts at: 1509 3104 1509 Size: 1595 5418 PmeI GTTT'AAAC Cuts at: 4012 4012 Size: 7013 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 1006 1038 6152 6184 1006 Size: 32 5114 32 1835 Fragments arranged by size: 5114 1835 32 32 PpuMI rG'GwC_Cy Cuts at: 604 2619 604 Size: 2015 4998 PshAI GACnn'nnGTC Cuts at: 1450 1450 Size: 7013 PspOMI G'GGCC_C Cuts at: 2422 2422 Size: 7013 PstI C_TGCA'G Cuts at: 542 1665 2198 2219 2462 2708 3161 4060 4745 Size: 1123 533 21 243 246 453 899 685 Cuts at: 4745 542 Size: 2810 Fragments arranged by size: 2810 1123 899 685 533 453 246 243 21 PvuI CG_AT'CG Cuts at: 104 104 Size: 7013 PvuII CAG'CTG Cuts at: 1815 1943 2057 2199 2703 4438 4798 1815 Size: 128 114 142 504 1735 360 4030 Fragments arranged by size: 4030 1735 504 360 142 128 114 RsrII CG'GwC_CG Cuts at: 5208 5208 Size: 7013 SacI G_AGCT'C Cuts at: 317 1617 2119 3557 4027 317 Size: 1300 502 1438 470 3303 Fragments arranged by size: 3303 1438 1300 502 470 SalI G'TCGA_C Cuts at: 4050 4050 Size: 7013 SapI GCTCTTCn'nnn_ Cuts at: 2839 5036 5246 2839 Size: 2197 210 4606 Fragments arranged by size: 4606 2197 210 SbfI CC_TGCA'GG Cuts at: 542 4060 542 Size: 3518 3495 ScaI AGT'ACT Cuts at: 6530 6530 Size: 7013 SfcI C'TryA_G Cuts at: 33 538 1580 1661 2194 2215 2379 2458 2704 Size: 505 1042 81 533 21 164 79 246 Cuts at: 2704 3141 3157 3655 4056 4741 5734 5925 33 Size: 437 16 498 401 685 993 191 1121 Fragments arranged by size: 1121 1042 993 685 533 505 498 437 401 246 191 164 81 79 21 16 SfiI GGCCn_nnn'nGGCC Cuts at: 1744 1744 Size: 7013 SfoI GGC'GCC Cuts at: 4445 4693 4445 Size: 248 6765 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 7013 SmaI CCC'GGG Cuts at: 1419 4035 1419 Size: 2616 4397 SmlI C'TyrA_G Cuts at: 4168 5083 5575 5837 4168 Size: 915 492 262 5344 Fragments arranged by size: 5344 915 492 262 SnaBI TAC'GTA Cuts at: 4005 4005 Size: 7013 SpeI A'CTAG_T Cuts at: 67 67 Size: 7013 SphI G_CATG'C Cuts at: 4066 4566 4066 Size: 500 6513 StuI AGG'CCT Cuts at: 1747 3653 1747 Size: 1906 5107 StyI C'CwwG_G Cuts at: 125 842 1059 1143 2099 3089 3206 3695 3930 Size: 717 217 84 956 990 117 489 235 Cuts at: 3930 4147 4501 125 Size: 217 354 2637 Fragments arranged by size: 2637 990 956 717 489 354 235 217 217 117 84 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 225 3626 4596 4729 5188 5397 225 Size: 3401 970 133 459 209 1841 Fragments arranged by size: 3401 1841 970 459 209 133 TatI w'GTAC_w Cuts at: 278 726 1937 2133 3249 3879 6528 278 Size: 448 1211 196 1116 630 2649 763 Fragments arranged by size: 2649 1211 1116 763 630 448 196 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 848 880 1351 1383 2701 2733 6530 6562 848 Size: 32 471 32 1318 32 3797 32 1299 Fragments arranged by size: 3797 1318 1299 471 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 4810 4810 Size: 7013 XbaI T'CTAG_A Cuts at: 4044 4044 Size: 7013 XcmI CCAnnnn_n'nnnnTGG Cuts at: 876 898 1185 1221 1293 2805 4508 876 Size: 22 287 36 72 1512 1703 3381 Fragments arranged by size: 3381 1703 1512 287 72 36 22 XmaI C'CCGG_G Cuts at: 1417 4033 1417 Size: 2616 4397 Enzymes that do cut: AarI AccI Acc65I AclI AcuI AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI AvrII BaeI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NheI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PspOMI PstI PvuI PvuII RsrII SacI SalI SapI SbfI ScaI SfcI SfiI SfoI SgfI SmaI SmlI SnaBI SpeI SphI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI Enzymes that do not cut: AatII AfeI AflII AscI BfrBI BsiWI BssHII BstZ17I ClaI CspCI EcoRV FseI FspAI MfeI NotI NruI NsiI PacI PmlI PsiI PspXI PsrI SacII SanDI SexAI SgrAI SrfI SspI SwaI XhoI XmnI ZraI