Result of FASTA (ccds) for
pF1KSDA0195
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0195, 1356 aa
1>>>pF1KSDA0195 1356 - 1356 aa - 1356 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5842+/-0.000856; mu= 17.4546+/- 0.052
mean_var=96.5156+/-19.037, 0's: 0 Z-trim(109.7): 14 B-trim: 0 in 0/52
Lambda= 0.130550
statistics sampled from 11058 (11060) to 11058 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.34), width: 16
Scan time: 4.260
The best scores are: opt bits E(32554)
CCDS32732.1 TMEM94 gene_id:9772|Hs108|chr17 (1356) 9229 1749.2 0
CCDS82204.1 TMEM94 gene_id:9772|Hs108|chr17 (1366) 9176 1739.2 0
>>CCDS32732.1 TMEM94 gene_id:9772|Hs108|chr17 (1356 aa)
initn: 9229 init1: 9229 opt: 9229 Z-score: 9386.4 bits: 1749.2 E(32554): 0
Smith-Waterman score: 9229; 100.0% identity (100.0% similar) in 1356 aa overlap (1-1356:1-1356)
10 20 30 40 50 60
pF1KSD MDLKEKHLGEPPSALGLSTRKALSVLKEQLEAVLEGHLRERKKCLTWKEVWRSSFLHHSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MDLKEKHLGEPPSALGLSTRKALSVLKEQLEAVLEGHLRERKKCLTWKEVWRSSFLHHSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD RCSCFHWPGASLMLLAVLLLLGCCGGQPAGSRGVGLVNASALFLLLLLNLVLIGRQDRLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RCSCFHWPGASLMLLAVLLLLGCCGGQPAGSRGVGLVNASALFLLLLLNLVLIGRQDRLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD RREVERRLRGIIDQIQDALRDGREIQWPSAMYPDLHMPFAPSWSLHWAYRDGHLVNLPVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RREVERRLRGIIDQIQDALRDGREIQWPSAMYPDLHMPFAPSWSLHWAYRDGHLVNLPVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LLVEGDIIALRPGQESFASLRGIKDDEHIVLEPGDLFPPFSPPPSPRGEVERGPQSPQQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LLVEGDIIALRPGQESFASLRGIKDDEHIVLEPGDLFPPFSPPPSPRGEVERGPQSPQQH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD RLFRVLETPVIDNIRWCLDMALSRPVTALDNERFTVQSVMLHYAVPVVLAGFLITNALRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RLFRVLETPVIDNIRWCLDMALSRPVTALDNERFTVQSVMLHYAVPVVLAGFLITNALRF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD IFSAPGVTSWQYTLLQLQVNGVLPILPLLFPVLWVLATACGEARVLAQMSKASPSSLLAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IFSAPGVTSWQYTLLQLQVNGVLPILPLLFPVLWVLATACGEARVLAQMSKASPSSLLAK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD FSEDTLSSYTEAVSSQEMLRCIWGHFLRVLGGTSPTLSHSSSLLHSLGSVTVLCCVDKQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FSEDTLSSYTEAVSSQEMLRCIWGHFLRVLGGTSPTLSHSSSLLHSLGSVTVLCCVDKQG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD ILSWPNPSPETVLFFSGKVEPPHSSHEDLTDGLSTRSFCHPEPHERDALLAGSLNNTLHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ILSWPNPSPETVLFFSGKVEPPHSSHEDLTDGLSTRSFCHPEPHERDALLAGSLNNTLHL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD SNEQERGDWPGEAPKPPEPYSHHKAHGRSKHPSGSNVSFSRDTEGGEEEPSKTQPGMESD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SNEQERGDWPGEAPKPPEPYSHHKAHGRSKHPSGSNVSFSRDTEGGEEEPSKTQPGMESD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD PYEAEDFVCDYHLEMLSLSQDQQNPSCIQFDDSNWQLHLTSLKPLGLNVLLNLCDASVTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PYEAEDFVCDYHLEMLSLSQDQQNPSCIQFDDSNWQLHLTSLKPLGLNVLLNLCDASVTE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD RLCRFSDHLCNIALQESHSAVLPVHVPWGLCELARLIGFTPGAKELFKQENHLALYRLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RLCRFSDHLCNIALQESHSAVLPVHVPWGLCELARLIGFTPGAKELFKQENHLALYRLPS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD AETMKETSLGRLSCVTKRRPPLSHMISLFIKDTTTSTEQMLSHGTADVVLEACTDFWDGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AETMKETSLGRLSCVTKRRPPLSHMISLFIKDTTTSTEQMLSHGTADVVLEACTDFWDGA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD DIYPLSGSDRKKVLDFYQRACLSGYCSAFAYKPMNCALSSQLNGKCIELVQVPGQSSIFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DIYPLSGSDRKKVLDFYQRACLSGYCSAFAYKPMNCALSSQLNGKCIELVQVPGQSSIFT
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD MCELPSTIPIKQNARRSSWSSDEGIGEVLEKEDCMQALSGQIFMGMVSSQYQARLDIVRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MCELPSTIPIKQNARRSSWSSDEGIGEVLEKEDCMQALSGQIFMGMVSSQYQARLDIVRL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD IDGLVNACIRFVYFSLEDELKSKVFAEKMGLETGWNCHISLTPNGDMPGSEIPPSSPSHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IDGLVNACIRFVYFSLEDELKSKVFAEKMGLETGWNCHISLTPNGDMPGSEIPPSSPSHA
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD GSLHDDLNQVSRDDAEGLLLMEEEGHSDLISFQPTDSDIPSFLEDSNRAKLPRGIHQVRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GSLHDDLNQVSRDDAEGLLLMEEEGHSDLISFQPTDSDIPSFLEDSNRAKLPRGIHQVRP
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD HLQNIDNVPLLVPLFTDCTPETMCEMIKIMQEYGEVTCCLGSSANLRNSCLFLQSDISIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HLQNIDNVPLLVPLFTDCTPETMCEMIKIMQEYGEVTCCLGSSANLRNSCLFLQSDISIA
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD LDPLYPSRCSWETFGYATSISMAQASDGLSPLQLSGQLNSLPCSLTFRQEETISIIRLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LDPLYPSRCSWETFGYATSISMAQASDGLSPLQLSGQLNSLPCSLTFRQEETISIIRLIE
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KSD QARHATYGIRKCFLFLLQCQLTLVVIQFLSCLVQLPPLLSTTDILWLSCFCYPLLSISLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QARHATYGIRKCFLFLLQCQLTLVVIQFLSCLVQLPPLLSTTDILWLSCFCYPLLSISLL
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KSD GKPPHSSIMSMATGKNLQSIPKKTQHYFLLCFLLKFSLTISSCLICFGFTLQSFCDSSRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GKPPHSSIMSMATGKNLQSIPKKTQHYFLLCFLLKFSLTISSCLICFGFTLQSFCDSSRD
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KSD RNLTNCSSVMLPSNDDRAPAWFEDFANGLLSAQKLTAALIVLHTVFISITHVHRTKPLWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RNLTNCSSVMLPSNDDRAPAWFEDFANGLLSAQKLTAALIVLHTVFISITHVHRTKPLWR
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KSD KSPLTNLWWAVTVPVVLLGQVVQTAVDLQLWTHRDSHVHFGLEDVPLLTWLLGCLSLVLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KSPLTNLWWAVTVPVVLLGQVVQTAVDLQLWTHRDSHVHFGLEDVPLLTWLLGCLSLVLV
1270 1280 1290 1300 1310 1320
1330 1340 1350
pF1KSD VVTNEIVKLHEIRVRVRYQKRQKLQFETKLGMNSPF
::::::::::::::::::::::::::::::::::::
CCDS32 VVTNEIVKLHEIRVRVRYQKRQKLQFETKLGMNSPF
1330 1340 1350
>>CCDS82204.1 TMEM94 gene_id:9772|Hs108|chr17 (1366 aa)
initn: 9176 init1: 9176 opt: 9176 Z-score: 9332.4 bits: 1739.2 E(32554): 0
Smith-Waterman score: 9176; 100.0% identity (100.0% similar) in 1348 aa overlap (9-1356:19-1366)
10 20 30 40 50
pF1KSD MDLKEKHLGEPPSALGLSTRKALSVLKEQLEAVLEGHLRERKKCLTWKEV
::::::::::::::::::::::::::::::::::::::::::
CCDS82 MLFKQAELWMPHQGKGNKGEPPSALGLSTRKALSVLKEQLEAVLEGHLRERKKCLTWKEV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KSD WRSSFLHHSNRCSCFHWPGASLMLLAVLLLLGCCGGQPAGSRGVGLVNASALFLLLLLNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 WRSSFLHHSNRCSCFHWPGASLMLLAVLLLLGCCGGQPAGSRGVGLVNASALFLLLLLNL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KSD VLIGRQDRLKRREVERRLRGIIDQIQDALRDGREIQWPSAMYPDLHMPFAPSWSLHWAYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VLIGRQDRLKRREVERRLRGIIDQIQDALRDGREIQWPSAMYPDLHMPFAPSWSLHWAYR
130 140 150 160 170 180
180 190 200 210 220 230
pF1KSD DGHLVNLPVSLLVEGDIIALRPGQESFASLRGIKDDEHIVLEPGDLFPPFSPPPSPRGEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DGHLVNLPVSLLVEGDIIALRPGQESFASLRGIKDDEHIVLEPGDLFPPFSPPPSPRGEV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KSD ERGPQSPQQHRLFRVLETPVIDNIRWCLDMALSRPVTALDNERFTVQSVMLHYAVPVVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ERGPQSPQQHRLFRVLETPVIDNIRWCLDMALSRPVTALDNERFTVQSVMLHYAVPVVLA
250 260 270 280 290 300
300 310 320 330 340 350
pF1KSD GFLITNALRFIFSAPGVTSWQYTLLQLQVNGVLPILPLLFPVLWVLATACGEARVLAQMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GFLITNALRFIFSAPGVTSWQYTLLQLQVNGVLPILPLLFPVLWVLATACGEARVLAQMS
310 320 330 340 350 360
360 370 380 390 400 410
pF1KSD KASPSSLLAKFSEDTLSSYTEAVSSQEMLRCIWGHFLRVLGGTSPTLSHSSSLLHSLGSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KASPSSLLAKFSEDTLSSYTEAVSSQEMLRCIWGHFLRVLGGTSPTLSHSSSLLHSLGSV
370 380 390 400 410 420
420 430 440 450 460 470
pF1KSD TVLCCVDKQGILSWPNPSPETVLFFSGKVEPPHSSHEDLTDGLSTRSFCHPEPHERDALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TVLCCVDKQGILSWPNPSPETVLFFSGKVEPPHSSHEDLTDGLSTRSFCHPEPHERDALL
430 440 450 460 470 480
480 490 500 510 520 530
pF1KSD AGSLNNTLHLSNEQERGDWPGEAPKPPEPYSHHKAHGRSKHPSGSNVSFSRDTEGGEEEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AGSLNNTLHLSNEQERGDWPGEAPKPPEPYSHHKAHGRSKHPSGSNVSFSRDTEGGEEEP
490 500 510 520 530 540
540 550 560 570 580 590
pF1KSD SKTQPGMESDPYEAEDFVCDYHLEMLSLSQDQQNPSCIQFDDSNWQLHLTSLKPLGLNVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SKTQPGMESDPYEAEDFVCDYHLEMLSLSQDQQNPSCIQFDDSNWQLHLTSLKPLGLNVL
550 560 570 580 590 600
600 610 620 630 640 650
pF1KSD LNLCDASVTERLCRFSDHLCNIALQESHSAVLPVHVPWGLCELARLIGFTPGAKELFKQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LNLCDASVTERLCRFSDHLCNIALQESHSAVLPVHVPWGLCELARLIGFTPGAKELFKQE
610 620 630 640 650 660
660 670 680 690 700 710
pF1KSD NHLALYRLPSAETMKETSLGRLSCVTKRRPPLSHMISLFIKDTTTSTEQMLSHGTADVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NHLALYRLPSAETMKETSLGRLSCVTKRRPPLSHMISLFIKDTTTSTEQMLSHGTADVVL
670 680 690 700 710 720
720 730 740 750 760 770
pF1KSD EACTDFWDGADIYPLSGSDRKKVLDFYQRACLSGYCSAFAYKPMNCALSSQLNGKCIELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EACTDFWDGADIYPLSGSDRKKVLDFYQRACLSGYCSAFAYKPMNCALSSQLNGKCIELV
730 740 750 760 770 780
780 790 800 810 820 830
pF1KSD QVPGQSSIFTMCELPSTIPIKQNARRSSWSSDEGIGEVLEKEDCMQALSGQIFMGMVSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QVPGQSSIFTMCELPSTIPIKQNARRSSWSSDEGIGEVLEKEDCMQALSGQIFMGMVSSQ
790 800 810 820 830 840
840 850 860 870 880 890
pF1KSD YQARLDIVRLIDGLVNACIRFVYFSLEDELKSKVFAEKMGLETGWNCHISLTPNGDMPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 YQARLDIVRLIDGLVNACIRFVYFSLEDELKSKVFAEKMGLETGWNCHISLTPNGDMPGS
850 860 870 880 890 900
900 910 920 930 940 950
pF1KSD EIPPSSPSHAGSLHDDLNQVSRDDAEGLLLMEEEGHSDLISFQPTDSDIPSFLEDSNRAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EIPPSSPSHAGSLHDDLNQVSRDDAEGLLLMEEEGHSDLISFQPTDSDIPSFLEDSNRAK
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KSD LPRGIHQVRPHLQNIDNVPLLVPLFTDCTPETMCEMIKIMQEYGEVTCCLGSSANLRNSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LPRGIHQVRPHLQNIDNVPLLVPLFTDCTPETMCEMIKIMQEYGEVTCCLGSSANLRNSC
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KSD LFLQSDISIALDPLYPSRCSWETFGYATSISMAQASDGLSPLQLSGQLNSLPCSLTFRQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LFLQSDISIALDPLYPSRCSWETFGYATSISMAQASDGLSPLQLSGQLNSLPCSLTFRQE
1030 1040 1050 1060 1070 1080
1080 1090 1100 1110 1120 1130
pF1KSD ETISIIRLIEQARHATYGIRKCFLFLLQCQLTLVVIQFLSCLVQLPPLLSTTDILWLSCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ETISIIRLIEQARHATYGIRKCFLFLLQCQLTLVVIQFLSCLVQLPPLLSTTDILWLSCF
1090 1100 1110 1120 1130 1140
1140 1150 1160 1170 1180 1190
pF1KSD CYPLLSISLLGKPPHSSIMSMATGKNLQSIPKKTQHYFLLCFLLKFSLTISSCLICFGFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 CYPLLSISLLGKPPHSSIMSMATGKNLQSIPKKTQHYFLLCFLLKFSLTISSCLICFGFT
1150 1160 1170 1180 1190 1200
1200 1210 1220 1230 1240 1250
pF1KSD LQSFCDSSRDRNLTNCSSVMLPSNDDRAPAWFEDFANGLLSAQKLTAALIVLHTVFISIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LQSFCDSSRDRNLTNCSSVMLPSNDDRAPAWFEDFANGLLSAQKLTAALIVLHTVFISIT
1210 1220 1230 1240 1250 1260
1260 1270 1280 1290 1300 1310
pF1KSD HVHRTKPLWRKSPLTNLWWAVTVPVVLLGQVVQTAVDLQLWTHRDSHVHFGLEDVPLLTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 HVHRTKPLWRKSPLTNLWWAVTVPVVLLGQVVQTAVDLQLWTHRDSHVHFGLEDVPLLTW
1270 1280 1290 1300 1310 1320
1320 1330 1340 1350
pF1KSD LLGCLSLVLVVVTNEIVKLHEIRVRVRYQKRQKLQFETKLGMNSPF
::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LLGCLSLVLVVVTNEIVKLHEIRVRVRYQKRQKLQFETKLGMNSPF
1330 1340 1350 1360
1356 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:34:58 2016 done: Thu Nov 3 00:34:59 2016
Total Scan time: 4.260 Total Display time: 0.170
Function used was FASTA [36.3.4 Apr, 2011]