Result of FASTA (omim) for
pF1KSDA0198
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0198, 496 aa
1>>>pF1KSDA0198 496 - 496 aa - 496 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7079+/-0.000414; mu= 4.9681+/- 0.025
mean_var=417.5215+/-94.795, 0's: 0 Z-trim(121.6): 1264 B-trim: 2196 in 1/56
Lambda= 0.062767
statistics sampled from 36516 (38391) to 36516 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.45), width: 16
Scan time: 10.350
The best scores are: opt bits E(85289)
NP_002648 (OMIM: 604866) zinc finger protein PLAGL ( 496) 3453 327.2 6.5e-89
XP_005260493 (OMIM: 604866) PREDICTED: zinc finger ( 496) 3453 327.2 6.5e-89
XP_011527166 (OMIM: 604866) PREDICTED: zinc finger ( 496) 3453 327.2 6.5e-89
XP_011527165 (OMIM: 604866) PREDICTED: zinc finger ( 496) 3453 327.2 6.5e-89
NP_002646 (OMIM: 181030,603026) zinc finger protei ( 500) 1452 146.0 2.3e-34
XP_016869065 (OMIM: 181030,603026) PREDICTED: zinc ( 500) 1452 146.0 2.3e-34
NP_001108106 (OMIM: 181030,603026) zinc finger pro ( 500) 1452 146.0 2.3e-34
XP_011515846 (OMIM: 181030,603026) PREDICTED: zinc ( 418) 1278 130.2 1.2e-29
NP_001108107 (OMIM: 181030,603026) zinc finger pro ( 418) 1278 130.2 1.2e-29
XP_016869066 (OMIM: 181030,603026) PREDICTED: zinc ( 418) 1278 130.2 1.2e-29
NP_001275973 (OMIM: 601410,603044) zinc finger pro ( 463) 1260 128.6 3.8e-29
NP_001275976 (OMIM: 601410,603044) zinc finger pro ( 463) 1260 128.6 3.8e-29
NP_001275971 (OMIM: 601410,603044) zinc finger pro ( 463) 1260 128.6 3.8e-29
NP_001074422 (OMIM: 601410,603044) zinc finger pro ( 463) 1260 128.6 3.8e-29
NP_001275974 (OMIM: 601410,603044) zinc finger pro ( 463) 1260 128.6 3.8e-29
NP_001074420 (OMIM: 601410,603044) zinc finger pro ( 463) 1260 128.6 3.8e-29
NP_001304091 (OMIM: 601410,603044) zinc finger pro ( 463) 1260 128.6 3.8e-29
NP_006709 (OMIM: 601410,603044) zinc finger protei ( 463) 1260 128.6 3.8e-29
NP_001074423 (OMIM: 601410,603044) zinc finger pro ( 463) 1260 128.6 3.8e-29
NP_001304088 (OMIM: 601410,603044) zinc finger pro ( 463) 1260 128.6 3.8e-29
NP_001275975 (OMIM: 601410,603044) zinc finger pro ( 463) 1260 128.6 3.8e-29
NP_001074421 (OMIM: 601410,603044) zinc finger pro ( 463) 1260 128.6 3.8e-29
NP_001304086 (OMIM: 601410,603044) zinc finger pro ( 463) 1260 128.6 3.8e-29
NP_001304090 (OMIM: 601410,603044) zinc finger pro ( 463) 1260 128.6 3.8e-29
NP_001275977 (OMIM: 601410,603044) zinc finger pro ( 463) 1260 128.6 3.8e-29
NP_001275972 (OMIM: 601410,603044) zinc finger pro ( 463) 1260 128.6 3.8e-29
NP_001275978 (OMIM: 601410,603044) zinc finger pro ( 463) 1260 128.6 3.8e-29
NP_001304085 (OMIM: 601410,603044) zinc finger pro ( 463) 1260 128.6 3.8e-29
NP_001275967 (OMIM: 601410,603044) zinc finger pro ( 411) 1096 113.7 1e-24
NP_001275969 (OMIM: 601410,603044) zinc finger pro ( 411) 1096 113.7 1e-24
NP_001275970 (OMIM: 601410,603044) zinc finger pro ( 411) 1096 113.7 1e-24
NP_001304087 (OMIM: 601410,603044) zinc finger pro ( 411) 1096 113.7 1e-24
NP_001074424 (OMIM: 601410,603044) zinc finger pro ( 411) 1096 113.7 1e-24
NP_001304089 (OMIM: 601410,603044) zinc finger pro ( 411) 1096 113.7 1e-24
NP_001275968 (OMIM: 601410,603044) zinc finger pro ( 411) 1096 113.7 1e-24
NP_001074425 (OMIM: 601410,603044) zinc finger pro ( 411) 1096 113.7 1e-24
NP_001275966 (OMIM: 601410,603044) zinc finger pro ( 411) 1096 113.7 1e-24
NP_001303926 (OMIM: 606957) zinc finger protein 25 ( 487) 426 53.1 2.1e-06
NP_001303927 (OMIM: 606957) zinc finger protein 25 ( 487) 426 53.1 2.1e-06
NP_001303925 (OMIM: 606957) zinc finger protein 25 ( 531) 426 53.2 2.2e-06
NP_258429 (OMIM: 606957) zinc finger protein 257 i ( 563) 426 53.2 2.3e-06
NP_001255984 (OMIM: 607022) transcriptional repres ( 299) 417 52.0 2.9e-06
NP_001255979 (OMIM: 607022) transcriptional repres ( 422) 418 52.3 3.2e-06
NP_001255983 (OMIM: 607022) transcriptional repres ( 403) 417 52.2 3.4e-06
NP_001255978 (OMIM: 607022) transcriptional repres ( 460) 417 52.3 3.6e-06
NP_001255974 (OMIM: 607022) transcriptional repres ( 627) 418 52.6 4e-06
NP_001255976 (OMIM: 607022) transcriptional repres ( 573) 417 52.4 4.1e-06
NP_001255971 (OMIM: 607022) transcriptional repres ( 662) 417 52.5 4.4e-06
NP_542185 (OMIM: 607022) transcriptional repressor ( 663) 417 52.5 4.4e-06
NP_001255969 (OMIM: 607022) transcriptional repres ( 663) 417 52.5 4.4e-06
>>NP_002648 (OMIM: 604866) zinc finger protein PLAGL2 [H (496 aa)
initn: 3453 init1: 3453 opt: 3453 Z-score: 1717.2 bits: 327.2 E(85289): 6.5e-89
Smith-Waterman score: 3453; 100.0% identity (100.0% similar) in 496 aa overlap (1-496:1-496)
10 20 30 40 50 60
pF1KSD MTTFFTSVPPWIQDAKQEEEVGWKLVPRPRGREAESQVKCQCEISGTPFSNGEKLRPHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MTTFFTSVPPWIQDAKQEEEVGWKLVPRPRGREAESQVKCQCEISGTPFSNGEKLRPHSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD PQPEQRPYSCPQLHCGKAFASKYKLYRHMATHSAQKPHQCMYCDKMFHRKDHLRNHLQTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PQPEQRPYSCPQLHCGKAFASKYKLYRHMATHSAQKPHQCMYCDKMFHRKDHLRNHLQTH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DPNKEALHCSECGKNYNTKLGYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAHSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DPNKEALHCSECGKNYNTKLGYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAHSR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD RVAGGAKEKKHPCDHCDRRFYTRKDVRRHLVVHTGRKDFLCQYCAQRFGRKDHLTRHVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RVAGGAKEKKHPCDHCDRRFYTRKDVRRHLVVHTGRKDFLCQYCAQRFGRKDHLTRHVKK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SHSQELLKIKTEPVDMLGLLSCSSTVSVKEELSPVLCMASRDVMGTKAFPGMLPMGMYGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SHSQELLKIKTEPVDMLGLLSCSSTVSVKEELSPVLCMASRDVMGTKAFPGMLPMGMYGA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD HIPTMPSTGVPHSLVHNTLPMGMSYPLESSPISSPAQLPPKYQLGSTSYLPDKLPKVEVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 HIPTMPSTGVPHSLVHNTLPMGMSYPLESSPISSPAQLPPKYQLGSTSYLPDKLPKVEVD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SFLAELPGSLSLSSAEPQPASPQPAAAAALLDEALLAKSPANLSEALCAANVDFSHLLGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SFLAELPGSLSLSSAEPQPASPQPAAAAALLDEALLAKSPANLSEALCAANVDFSHLLGF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LPLNLPPCNPPGATGGLVMGYSQAEAQPLLTTLQAQPQDSPGAGGPLNFGPLHSLPPVFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LPLNLPPCNPPGATGGLVMGYSQAEAQPLLTTLQAQPQDSPGAGGPLNFGPLHSLPPVFT
430 440 450 460 470 480
490
pF1KSD SGLSSTTLPRFHQAFQ
::::::::::::::::
NP_002 SGLSSTTLPRFHQAFQ
490
>>XP_005260493 (OMIM: 604866) PREDICTED: zinc finger pro (496 aa)
initn: 3453 init1: 3453 opt: 3453 Z-score: 1717.2 bits: 327.2 E(85289): 6.5e-89
Smith-Waterman score: 3453; 100.0% identity (100.0% similar) in 496 aa overlap (1-496:1-496)
10 20 30 40 50 60
pF1KSD MTTFFTSVPPWIQDAKQEEEVGWKLVPRPRGREAESQVKCQCEISGTPFSNGEKLRPHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MTTFFTSVPPWIQDAKQEEEVGWKLVPRPRGREAESQVKCQCEISGTPFSNGEKLRPHSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD PQPEQRPYSCPQLHCGKAFASKYKLYRHMATHSAQKPHQCMYCDKMFHRKDHLRNHLQTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQPEQRPYSCPQLHCGKAFASKYKLYRHMATHSAQKPHQCMYCDKMFHRKDHLRNHLQTH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DPNKEALHCSECGKNYNTKLGYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAHSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DPNKEALHCSECGKNYNTKLGYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAHSR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD RVAGGAKEKKHPCDHCDRRFYTRKDVRRHLVVHTGRKDFLCQYCAQRFGRKDHLTRHVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RVAGGAKEKKHPCDHCDRRFYTRKDVRRHLVVHTGRKDFLCQYCAQRFGRKDHLTRHVKK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SHSQELLKIKTEPVDMLGLLSCSSTVSVKEELSPVLCMASRDVMGTKAFPGMLPMGMYGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SHSQELLKIKTEPVDMLGLLSCSSTVSVKEELSPVLCMASRDVMGTKAFPGMLPMGMYGA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD HIPTMPSTGVPHSLVHNTLPMGMSYPLESSPISSPAQLPPKYQLGSTSYLPDKLPKVEVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HIPTMPSTGVPHSLVHNTLPMGMSYPLESSPISSPAQLPPKYQLGSTSYLPDKLPKVEVD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SFLAELPGSLSLSSAEPQPASPQPAAAAALLDEALLAKSPANLSEALCAANVDFSHLLGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SFLAELPGSLSLSSAEPQPASPQPAAAAALLDEALLAKSPANLSEALCAANVDFSHLLGF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LPLNLPPCNPPGATGGLVMGYSQAEAQPLLTTLQAQPQDSPGAGGPLNFGPLHSLPPVFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LPLNLPPCNPPGATGGLVMGYSQAEAQPLLTTLQAQPQDSPGAGGPLNFGPLHSLPPVFT
430 440 450 460 470 480
490
pF1KSD SGLSSTTLPRFHQAFQ
::::::::::::::::
XP_005 SGLSSTTLPRFHQAFQ
490
>>XP_011527166 (OMIM: 604866) PREDICTED: zinc finger pro (496 aa)
initn: 3453 init1: 3453 opt: 3453 Z-score: 1717.2 bits: 327.2 E(85289): 6.5e-89
Smith-Waterman score: 3453; 100.0% identity (100.0% similar) in 496 aa overlap (1-496:1-496)
10 20 30 40 50 60
pF1KSD MTTFFTSVPPWIQDAKQEEEVGWKLVPRPRGREAESQVKCQCEISGTPFSNGEKLRPHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTTFFTSVPPWIQDAKQEEEVGWKLVPRPRGREAESQVKCQCEISGTPFSNGEKLRPHSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD PQPEQRPYSCPQLHCGKAFASKYKLYRHMATHSAQKPHQCMYCDKMFHRKDHLRNHLQTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PQPEQRPYSCPQLHCGKAFASKYKLYRHMATHSAQKPHQCMYCDKMFHRKDHLRNHLQTH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DPNKEALHCSECGKNYNTKLGYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAHSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DPNKEALHCSECGKNYNTKLGYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAHSR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD RVAGGAKEKKHPCDHCDRRFYTRKDVRRHLVVHTGRKDFLCQYCAQRFGRKDHLTRHVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RVAGGAKEKKHPCDHCDRRFYTRKDVRRHLVVHTGRKDFLCQYCAQRFGRKDHLTRHVKK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SHSQELLKIKTEPVDMLGLLSCSSTVSVKEELSPVLCMASRDVMGTKAFPGMLPMGMYGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SHSQELLKIKTEPVDMLGLLSCSSTVSVKEELSPVLCMASRDVMGTKAFPGMLPMGMYGA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD HIPTMPSTGVPHSLVHNTLPMGMSYPLESSPISSPAQLPPKYQLGSTSYLPDKLPKVEVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HIPTMPSTGVPHSLVHNTLPMGMSYPLESSPISSPAQLPPKYQLGSTSYLPDKLPKVEVD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SFLAELPGSLSLSSAEPQPASPQPAAAAALLDEALLAKSPANLSEALCAANVDFSHLLGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFLAELPGSLSLSSAEPQPASPQPAAAAALLDEALLAKSPANLSEALCAANVDFSHLLGF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LPLNLPPCNPPGATGGLVMGYSQAEAQPLLTTLQAQPQDSPGAGGPLNFGPLHSLPPVFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LPLNLPPCNPPGATGGLVMGYSQAEAQPLLTTLQAQPQDSPGAGGPLNFGPLHSLPPVFT
430 440 450 460 470 480
490
pF1KSD SGLSSTTLPRFHQAFQ
::::::::::::::::
XP_011 SGLSSTTLPRFHQAFQ
490
>>XP_011527165 (OMIM: 604866) PREDICTED: zinc finger pro (496 aa)
initn: 3453 init1: 3453 opt: 3453 Z-score: 1717.2 bits: 327.2 E(85289): 6.5e-89
Smith-Waterman score: 3453; 100.0% identity (100.0% similar) in 496 aa overlap (1-496:1-496)
10 20 30 40 50 60
pF1KSD MTTFFTSVPPWIQDAKQEEEVGWKLVPRPRGREAESQVKCQCEISGTPFSNGEKLRPHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTTFFTSVPPWIQDAKQEEEVGWKLVPRPRGREAESQVKCQCEISGTPFSNGEKLRPHSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD PQPEQRPYSCPQLHCGKAFASKYKLYRHMATHSAQKPHQCMYCDKMFHRKDHLRNHLQTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PQPEQRPYSCPQLHCGKAFASKYKLYRHMATHSAQKPHQCMYCDKMFHRKDHLRNHLQTH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD DPNKEALHCSECGKNYNTKLGYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAHSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DPNKEALHCSECGKNYNTKLGYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAHSR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD RVAGGAKEKKHPCDHCDRRFYTRKDVRRHLVVHTGRKDFLCQYCAQRFGRKDHLTRHVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RVAGGAKEKKHPCDHCDRRFYTRKDVRRHLVVHTGRKDFLCQYCAQRFGRKDHLTRHVKK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SHSQELLKIKTEPVDMLGLLSCSSTVSVKEELSPVLCMASRDVMGTKAFPGMLPMGMYGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SHSQELLKIKTEPVDMLGLLSCSSTVSVKEELSPVLCMASRDVMGTKAFPGMLPMGMYGA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD HIPTMPSTGVPHSLVHNTLPMGMSYPLESSPISSPAQLPPKYQLGSTSYLPDKLPKVEVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HIPTMPSTGVPHSLVHNTLPMGMSYPLESSPISSPAQLPPKYQLGSTSYLPDKLPKVEVD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SFLAELPGSLSLSSAEPQPASPQPAAAAALLDEALLAKSPANLSEALCAANVDFSHLLGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFLAELPGSLSLSSAEPQPASPQPAAAAALLDEALLAKSPANLSEALCAANVDFSHLLGF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LPLNLPPCNPPGATGGLVMGYSQAEAQPLLTTLQAQPQDSPGAGGPLNFGPLHSLPPVFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LPLNLPPCNPPGATGGLVMGYSQAEAQPLLTTLQAQPQDSPGAGGPLNFGPLHSLPPVFT
430 440 450 460 470 480
490
pF1KSD SGLSSTTLPRFHQAFQ
::::::::::::::::
XP_011 SGLSSTTLPRFHQAFQ
490
>>NP_002646 (OMIM: 181030,603026) zinc finger protein PL (500 aa)
initn: 1642 init1: 1232 opt: 1452 Z-score: 737.9 bits: 146.0 E(85289): 2.3e-34
Smith-Waterman score: 1709; 52.0% identity (75.2% similar) in 504 aa overlap (6-496:3-500)
10 20 30 40 50 60
pF1KSD MTTFFTSVPPWIQDAKQEEEVGWKLVPRPRGREAESQVKCQCEISGTPFSNGEKLRPHSL
: .: ...... ..: : :: :.. . . :.. :.. :::. ::
NP_002 MATVIPGDLSEVRDTQKV--PSGKRKRG-ETKPRKNFPCQLCDKAFNSVEKLKVHSY
10 20 30 40 50
70 80 90 100 110 120
pF1KSD PQPEQRPYSCPQLHCGKAFASKYKLYRHMATHSAQKPHQCMYCDKMFHRKDHLRNHLQTH
. .:::.: : : :::.::::: ::::::: .: :.: ::.:::::::::.:::.::
NP_002 SHTGERPYKCIQQDCTKAFVSKYKLQRHMATHSPEKTHKCNYCEKMFHRKDHLKNHLHTH
60 70 80 90 100 110
130 140 150 160 170 180
pF1KSD DPNKEALHCSECGKNYNTKLGYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAHSR
:::::...: :::::::::::..::::.:::.::::.::::::::::: .::::::.:.
NP_002 DPNKETFKCEECGKNYNTKLGFKRHLALHAATSGDLTCKVCLQTFESTGVLLEHLKSHAG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KSD RVAGGAKEKKHPCDHCDRRFYTRKDVRRHLVVHTGRKDFLCQYCAQRFGRKDHLTRHVKK
. .::.::::: :.:::::::::::::::.:::::::::::::::::::::::::::.::
NP_002 KSSGGVKEKKHQCEHCDRRFYTRKDVRRHMVVHTGRKDFLCQYCAQRFGRKDHLTRHMKK
180 190 200 210 220 230
250 260 270 280 290 300
pF1KSD SHSQELLKIKTEPVDMLGLLSCSSTVSVKEELSPVLCMASRDVMGTKAFPGMLPMGMYGA
::.:::::.::::::.: ..:. .: .:.:: ::. . : ... .: : . : ...:..
NP_002 SHNQELLKVKTEPVDFLDPFTCNVSVPIKDELLPVMSLPSSELL-SKPFTNTLQLNLYNT
240 250 260 270 280 290
310 320 330 340 350
pF1KSD HIPTMPSTGVPHSLVHNTLPMGMSYPLESSPISSPAQLPPKYQLGSTSY---LPDK-LP-
. .: :.: :... .:::.::. :.. . . .: :: ..:::: .:.: :
NP_002 PFQSMQSSGSAHQMI-TTLPLGMTCPIDMDTVHPSHHLSFKYPFSSTSYAISIPEKEQPL
300 310 320 330 340 350
360 370 380 390 400
pF1KSD KVEVDSFLAELPGSLSLSSAEPQPAS-------PQPAAAAALLDEALLAKSPANLSEALC
: :..:.: :: :.. :: . : .: :: .. . :.:: ..:. :
NP_002 KGEIESYLMELQGGVPSSSQDSQASSSSKLGLDPQIGSLDDGAGDLSLSKSSISISDPLN
360 370 380 390 400 410
410 420 430 440 450 460
pF1KSD AANVDFSHLLGFLPLNLPPCNPPGATGGLVMGYSQAEAQPLLTTLQAQPQDSPGAGGPLN
. .:::.:..:.::: :: :: ..:.: :.::: ::. .. : : :: .. ..
NP_002 TPALDFSQLFNFIPLNGPPYNPL-SVGSLGMSYSQEEAHSSVSQLPPQTQDLQDPANTIG
420 430 440 450 460 470
470 480 490
pF1KSD FGPLHSLPPVFTSGLS-STTLPRFHQAFQ
.: :::: .:::.:: ::::::::::::
NP_002 LGSLHSLSAAFTSSLSTSTTLPRFHQAFQ
480 490 500
>>XP_016869065 (OMIM: 181030,603026) PREDICTED: zinc fin (500 aa)
initn: 1642 init1: 1232 opt: 1452 Z-score: 737.9 bits: 146.0 E(85289): 2.3e-34
Smith-Waterman score: 1709; 52.0% identity (75.2% similar) in 504 aa overlap (6-496:3-500)
10 20 30 40 50 60
pF1KSD MTTFFTSVPPWIQDAKQEEEVGWKLVPRPRGREAESQVKCQCEISGTPFSNGEKLRPHSL
: .: ...... ..: : :: :.. . . :.. :.. :::. ::
XP_016 MATVIPGDLSEVRDTQKV--PSGKRKRG-ETKPRKNFPCQLCDKAFNSVEKLKVHSY
10 20 30 40 50
70 80 90 100 110 120
pF1KSD PQPEQRPYSCPQLHCGKAFASKYKLYRHMATHSAQKPHQCMYCDKMFHRKDHLRNHLQTH
. .:::.: : : :::.::::: ::::::: .: :.: ::.:::::::::.:::.::
XP_016 SHTGERPYKCIQQDCTKAFVSKYKLQRHMATHSPEKTHKCNYCEKMFHRKDHLKNHLHTH
60 70 80 90 100 110
130 140 150 160 170 180
pF1KSD DPNKEALHCSECGKNYNTKLGYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAHSR
:::::...: :::::::::::..::::.:::.::::.::::::::::: .::::::.:.
XP_016 DPNKETFKCEECGKNYNTKLGFKRHLALHAATSGDLTCKVCLQTFESTGVLLEHLKSHAG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KSD RVAGGAKEKKHPCDHCDRRFYTRKDVRRHLVVHTGRKDFLCQYCAQRFGRKDHLTRHVKK
. .::.::::: :.:::::::::::::::.:::::::::::::::::::::::::::.::
XP_016 KSSGGVKEKKHQCEHCDRRFYTRKDVRRHMVVHTGRKDFLCQYCAQRFGRKDHLTRHMKK
180 190 200 210 220 230
250 260 270 280 290 300
pF1KSD SHSQELLKIKTEPVDMLGLLSCSSTVSVKEELSPVLCMASRDVMGTKAFPGMLPMGMYGA
::.:::::.::::::.: ..:. .: .:.:: ::. . : ... .: : . : ...:..
XP_016 SHNQELLKVKTEPVDFLDPFTCNVSVPIKDELLPVMSLPSSELL-SKPFTNTLQLNLYNT
240 250 260 270 280 290
310 320 330 340 350
pF1KSD HIPTMPSTGVPHSLVHNTLPMGMSYPLESSPISSPAQLPPKYQLGSTSY---LPDK-LP-
. .: :.: :... .:::.::. :.. . . .: :: ..:::: .:.: :
XP_016 PFQSMQSSGSAHQMI-TTLPLGMTCPIDMDTVHPSHHLSFKYPFSSTSYAISIPEKEQPL
300 310 320 330 340 350
360 370 380 390 400
pF1KSD KVEVDSFLAELPGSLSLSSAEPQPAS-------PQPAAAAALLDEALLAKSPANLSEALC
: :..:.: :: :.. :: . : .: :: .. . :.:: ..:. :
XP_016 KGEIESYLMELQGGVPSSSQDSQASSSSKLGLDPQIGSLDDGAGDLSLSKSSISISDPLN
360 370 380 390 400 410
410 420 430 440 450 460
pF1KSD AANVDFSHLLGFLPLNLPPCNPPGATGGLVMGYSQAEAQPLLTTLQAQPQDSPGAGGPLN
. .:::.:..:.::: :: :: ..:.: :.::: ::. .. : : :: .. ..
XP_016 TPALDFSQLFNFIPLNGPPYNPL-SVGSLGMSYSQEEAHSSVSQLPPQTQDLQDPANTIG
420 430 440 450 460 470
470 480 490
pF1KSD FGPLHSLPPVFTSGLS-STTLPRFHQAFQ
.: :::: .:::.:: ::::::::::::
XP_016 LGSLHSLSAAFTSSLSTSTTLPRFHQAFQ
480 490 500
>>NP_001108106 (OMIM: 181030,603026) zinc finger protein (500 aa)
initn: 1642 init1: 1232 opt: 1452 Z-score: 737.9 bits: 146.0 E(85289): 2.3e-34
Smith-Waterman score: 1709; 52.0% identity (75.2% similar) in 504 aa overlap (6-496:3-500)
10 20 30 40 50 60
pF1KSD MTTFFTSVPPWIQDAKQEEEVGWKLVPRPRGREAESQVKCQCEISGTPFSNGEKLRPHSL
: .: ...... ..: : :: :.. . . :.. :.. :::. ::
NP_001 MATVIPGDLSEVRDTQKV--PSGKRKRG-ETKPRKNFPCQLCDKAFNSVEKLKVHSY
10 20 30 40 50
70 80 90 100 110 120
pF1KSD PQPEQRPYSCPQLHCGKAFASKYKLYRHMATHSAQKPHQCMYCDKMFHRKDHLRNHLQTH
. .:::.: : : :::.::::: ::::::: .: :.: ::.:::::::::.:::.::
NP_001 SHTGERPYKCIQQDCTKAFVSKYKLQRHMATHSPEKTHKCNYCEKMFHRKDHLKNHLHTH
60 70 80 90 100 110
130 140 150 160 170 180
pF1KSD DPNKEALHCSECGKNYNTKLGYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAHSR
:::::...: :::::::::::..::::.:::.::::.::::::::::: .::::::.:.
NP_001 DPNKETFKCEECGKNYNTKLGFKRHLALHAATSGDLTCKVCLQTFESTGVLLEHLKSHAG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KSD RVAGGAKEKKHPCDHCDRRFYTRKDVRRHLVVHTGRKDFLCQYCAQRFGRKDHLTRHVKK
. .::.::::: :.:::::::::::::::.:::::::::::::::::::::::::::.::
NP_001 KSSGGVKEKKHQCEHCDRRFYTRKDVRRHMVVHTGRKDFLCQYCAQRFGRKDHLTRHMKK
180 190 200 210 220 230
250 260 270 280 290 300
pF1KSD SHSQELLKIKTEPVDMLGLLSCSSTVSVKEELSPVLCMASRDVMGTKAFPGMLPMGMYGA
::.:::::.::::::.: ..:. .: .:.:: ::. . : ... .: : . : ...:..
NP_001 SHNQELLKVKTEPVDFLDPFTCNVSVPIKDELLPVMSLPSSELL-SKPFTNTLQLNLYNT
240 250 260 270 280 290
310 320 330 340 350
pF1KSD HIPTMPSTGVPHSLVHNTLPMGMSYPLESSPISSPAQLPPKYQLGSTSY---LPDK-LP-
. .: :.: :... .:::.::. :.. . . .: :: ..:::: .:.: :
NP_001 PFQSMQSSGSAHQMI-TTLPLGMTCPIDMDTVHPSHHLSFKYPFSSTSYAISIPEKEQPL
300 310 320 330 340 350
360 370 380 390 400
pF1KSD KVEVDSFLAELPGSLSLSSAEPQPAS-------PQPAAAAALLDEALLAKSPANLSEALC
: :..:.: :: :.. :: . : .: :: .. . :.:: ..:. :
NP_001 KGEIESYLMELQGGVPSSSQDSQASSSSKLGLDPQIGSLDDGAGDLSLSKSSISISDPLN
360 370 380 390 400 410
410 420 430 440 450 460
pF1KSD AANVDFSHLLGFLPLNLPPCNPPGATGGLVMGYSQAEAQPLLTTLQAQPQDSPGAGGPLN
. .:::.:..:.::: :: :: ..:.: :.::: ::. .. : : :: .. ..
NP_001 TPALDFSQLFNFIPLNGPPYNPL-SVGSLGMSYSQEEAHSSVSQLPPQTQDLQDPANTIG
420 430 440 450 460 470
470 480 490
pF1KSD FGPLHSLPPVFTSGLS-STTLPRFHQAFQ
.: :::: .:::.:: ::::::::::::
NP_001 LGSLHSLSAAFTSSLSTSTTLPRFHQAFQ
480 490 500
>>XP_011515846 (OMIM: 181030,603026) PREDICTED: zinc fin (418 aa)
initn: 1557 init1: 1088 opt: 1278 Z-score: 653.5 bits: 130.2 E(85289): 1.2e-29
Smith-Waterman score: 1535; 55.1% identity (77.7% similar) in 421 aa overlap (89-496:1-418)
60 70 80 90 100 110
pF1KSD SLPQPEQRPYSCPQLHCGKAFASKYKLYRHMATHSAQKPHQCMYCDKMFHRKDHLRNHLQ
::::: .: :.: ::.:::::::::.:::.
XP_011 MATHSPEKTHKCNYCEKMFHRKDHLKNHLH
10 20 30
120 130 140 150 160 170
pF1KSD THDPNKEALHCSECGKNYNTKLGYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAH
:::::::...: :::::::::::..::::.:::.::::.::::::::::: .::::::.:
XP_011 THDPNKETFKCEECGKNYNTKLGFKRHLALHAATSGDLTCKVCLQTFESTGVLLEHLKSH
40 50 60 70 80 90
180 190 200 210 220 230
pF1KSD SRRVAGGAKEKKHPCDHCDRRFYTRKDVRRHLVVHTGRKDFLCQYCAQRFGRKDHLTRHV
. . .::.::::: :.:::::::::::::::.:::::::::::::::::::::::::::.
XP_011 AGKSSGGVKEKKHQCEHCDRRFYTRKDVRRHMVVHTGRKDFLCQYCAQRFGRKDHLTRHM
100 110 120 130 140 150
240 250 260 270 280 290
pF1KSD KKSHSQELLKIKTEPVDMLGLLSCSSTVSVKEELSPVLCMASRDVMGTKAFPGMLPMGMY
::::.:::::.::::::.: ..:. .: .:.:: ::. . : ... .: : . : ...:
XP_011 KKSHNQELLKVKTEPVDFLDPFTCNVSVPIKDELLPVMSLPSSELL-SKPFTNTLQLNLY
160 170 180 190 200
300 310 320 330 340 350
pF1KSD GAHIPTMPSTGVPHSLVHNTLPMGMSYPLESSPISSPAQLPPKYQLGSTSY---LPDK-L
.. . .: :.: :... .:::.::. :.. . . .: :: ..:::: .:.:
XP_011 NTPFQSMQSSGSAHQMI-TTLPLGMTCPIDMDTVHPSHHLSFKYPFSSTSYAISIPEKEQ
210 220 230 240 250 260
360 370 380 390 400
pF1KSD P-KVEVDSFLAELPGSLSLSSAEPQPAS-------PQPAAAAALLDEALLAKSPANLSEA
: : :..:.: :: :.. :: . : .: :: .. . :.:: ..:.
XP_011 PLKGEIESYLMELQGGVPSSSQDSQASSSSKLGLDPQIGSLDDGAGDLSLSKSSISISDP
270 280 290 300 310 320
410 420 430 440 450 460
pF1KSD LCAANVDFSHLLGFLPLNLPPCNPPGATGGLVMGYSQAEAQPLLTTLQAQPQDSPGAGGP
: . .:::.:..:.::: :: :: ..:.: :.::: ::. .. : : :: ..
XP_011 LNTPALDFSQLFNFIPLNGPPYNPL-SVGSLGMSYSQEEAHSSVSQLPPQTQDLQDPANT
330 340 350 360 370 380
470 480 490
pF1KSD LNFGPLHSLPPVFTSGLS-STTLPRFHQAFQ
...: :::: .:::.:: ::::::::::::
XP_011 IGLGSLHSLSAAFTSSLSTSTTLPRFHQAFQ
390 400 410
>>NP_001108107 (OMIM: 181030,603026) zinc finger protein (418 aa)
initn: 1557 init1: 1088 opt: 1278 Z-score: 653.5 bits: 130.2 E(85289): 1.2e-29
Smith-Waterman score: 1535; 55.1% identity (77.7% similar) in 421 aa overlap (89-496:1-418)
60 70 80 90 100 110
pF1KSD SLPQPEQRPYSCPQLHCGKAFASKYKLYRHMATHSAQKPHQCMYCDKMFHRKDHLRNHLQ
::::: .: :.: ::.:::::::::.:::.
NP_001 MATHSPEKTHKCNYCEKMFHRKDHLKNHLH
10 20 30
120 130 140 150 160 170
pF1KSD THDPNKEALHCSECGKNYNTKLGYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAH
:::::::...: :::::::::::..::::.:::.::::.::::::::::: .::::::.:
NP_001 THDPNKETFKCEECGKNYNTKLGFKRHLALHAATSGDLTCKVCLQTFESTGVLLEHLKSH
40 50 60 70 80 90
180 190 200 210 220 230
pF1KSD SRRVAGGAKEKKHPCDHCDRRFYTRKDVRRHLVVHTGRKDFLCQYCAQRFGRKDHLTRHV
. . .::.::::: :.:::::::::::::::.:::::::::::::::::::::::::::.
NP_001 AGKSSGGVKEKKHQCEHCDRRFYTRKDVRRHMVVHTGRKDFLCQYCAQRFGRKDHLTRHM
100 110 120 130 140 150
240 250 260 270 280 290
pF1KSD KKSHSQELLKIKTEPVDMLGLLSCSSTVSVKEELSPVLCMASRDVMGTKAFPGMLPMGMY
::::.:::::.::::::.: ..:. .: .:.:: ::. . : ... .: : . : ...:
NP_001 KKSHNQELLKVKTEPVDFLDPFTCNVSVPIKDELLPVMSLPSSELL-SKPFTNTLQLNLY
160 170 180 190 200
300 310 320 330 340 350
pF1KSD GAHIPTMPSTGVPHSLVHNTLPMGMSYPLESSPISSPAQLPPKYQLGSTSY---LPDK-L
.. . .: :.: :... .:::.::. :.. . . .: :: ..:::: .:.:
NP_001 NTPFQSMQSSGSAHQMI-TTLPLGMTCPIDMDTVHPSHHLSFKYPFSSTSYAISIPEKEQ
210 220 230 240 250 260
360 370 380 390 400
pF1KSD P-KVEVDSFLAELPGSLSLSSAEPQPAS-------PQPAAAAALLDEALLAKSPANLSEA
: : :..:.: :: :.. :: . : .: :: .. . :.:: ..:.
NP_001 PLKGEIESYLMELQGGVPSSSQDSQASSSSKLGLDPQIGSLDDGAGDLSLSKSSISISDP
270 280 290 300 310 320
410 420 430 440 450 460
pF1KSD LCAANVDFSHLLGFLPLNLPPCNPPGATGGLVMGYSQAEAQPLLTTLQAQPQDSPGAGGP
: . .:::.:..:.::: :: :: ..:.: :.::: ::. .. : : :: ..
NP_001 LNTPALDFSQLFNFIPLNGPPYNPL-SVGSLGMSYSQEEAHSSVSQLPPQTQDLQDPANT
330 340 350 360 370 380
470 480 490
pF1KSD LNFGPLHSLPPVFTSGLS-STTLPRFHQAFQ
...: :::: .:::.:: ::::::::::::
NP_001 IGLGSLHSLSAAFTSSLSTSTTLPRFHQAFQ
390 400 410
>>XP_016869066 (OMIM: 181030,603026) PREDICTED: zinc fin (418 aa)
initn: 1557 init1: 1088 opt: 1278 Z-score: 653.5 bits: 130.2 E(85289): 1.2e-29
Smith-Waterman score: 1535; 55.1% identity (77.7% similar) in 421 aa overlap (89-496:1-418)
60 70 80 90 100 110
pF1KSD SLPQPEQRPYSCPQLHCGKAFASKYKLYRHMATHSAQKPHQCMYCDKMFHRKDHLRNHLQ
::::: .: :.: ::.:::::::::.:::.
XP_016 MATHSPEKTHKCNYCEKMFHRKDHLKNHLH
10 20 30
120 130 140 150 160 170
pF1KSD THDPNKEALHCSECGKNYNTKLGYRRHLAMHAASSGDLSCKVCLQTFESTQALLEHLKAH
:::::::...: :::::::::::..::::.:::.::::.::::::::::: .::::::.:
XP_016 THDPNKETFKCEECGKNYNTKLGFKRHLALHAATSGDLTCKVCLQTFESTGVLLEHLKSH
40 50 60 70 80 90
180 190 200 210 220 230
pF1KSD SRRVAGGAKEKKHPCDHCDRRFYTRKDVRRHLVVHTGRKDFLCQYCAQRFGRKDHLTRHV
. . .::.::::: :.:::::::::::::::.:::::::::::::::::::::::::::.
XP_016 AGKSSGGVKEKKHQCEHCDRRFYTRKDVRRHMVVHTGRKDFLCQYCAQRFGRKDHLTRHM
100 110 120 130 140 150
240 250 260 270 280 290
pF1KSD KKSHSQELLKIKTEPVDMLGLLSCSSTVSVKEELSPVLCMASRDVMGTKAFPGMLPMGMY
::::.:::::.::::::.: ..:. .: .:.:: ::. . : ... .: : . : ...:
XP_016 KKSHNQELLKVKTEPVDFLDPFTCNVSVPIKDELLPVMSLPSSELL-SKPFTNTLQLNLY
160 170 180 190 200
300 310 320 330 340 350
pF1KSD GAHIPTMPSTGVPHSLVHNTLPMGMSYPLESSPISSPAQLPPKYQLGSTSY---LPDK-L
.. . .: :.: :... .:::.::. :.. . . .: :: ..:::: .:.:
XP_016 NTPFQSMQSSGSAHQMI-TTLPLGMTCPIDMDTVHPSHHLSFKYPFSSTSYAISIPEKEQ
210 220 230 240 250 260
360 370 380 390 400
pF1KSD P-KVEVDSFLAELPGSLSLSSAEPQPAS-------PQPAAAAALLDEALLAKSPANLSEA
: : :..:.: :: :.. :: . : .: :: .. . :.:: ..:.
XP_016 PLKGEIESYLMELQGGVPSSSQDSQASSSSKLGLDPQIGSLDDGAGDLSLSKSSISISDP
270 280 290 300 310 320
410 420 430 440 450 460
pF1KSD LCAANVDFSHLLGFLPLNLPPCNPPGATGGLVMGYSQAEAQPLLTTLQAQPQDSPGAGGP
: . .:::.:..:.::: :: :: ..:.: :.::: ::. .. : : :: ..
XP_016 LNTPALDFSQLFNFIPLNGPPYNPL-SVGSLGMSYSQEEAHSSVSQLPPQTQDLQDPANT
330 340 350 360 370 380
470 480 490
pF1KSD LNFGPLHSLPPVFTSGLS-STTLPRFHQAFQ
...: :::: .:::.:: ::::::::::::
XP_016 IGLGSLHSLSAAFTSSLSTSTTLPRFHQAFQ
390 400 410
496 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:35:40 2016 done: Thu Nov 3 00:35:41 2016
Total Scan time: 10.350 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]