FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0199, 1279 aa
  1>>>pF1KSDA0199 1279 - 1279 aa - 1279 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4364+/-0.000894; mu= 10.0852+/- 0.054
 mean_var=200.8878+/-41.540, 0's: 0 Z-trim(113.0): 55  B-trim: 738 in 1/52
 Lambda= 0.090489
 statistics sampled from 13627 (13681) to 13627 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.42), width:  16
 Scan time:  4.860

The best scores are:                                      opt bits E(32554)
CCDS2755.2 SCAP gene_id:22937|Hs108|chr3           (1279) 8711 1150.7       0


>>CCDS2755.2 SCAP gene_id:22937|Hs108|chr3                (1279 aa)
 initn: 8711 init1: 8711 opt: 8711  Z-score: 6153.0  bits: 1150.7 E(32554):    0
Smith-Waterman score: 8711; 100.0% identity (100.0% similar) in 1279 aa overlap (1-1279:1-1279)

               10        20        30        40        50        60
pF1KSD MTLTERLREKISRAFYNHGLLCASYPIPIILFTGFCILACCYPLLKLPLPGTGPVEFTTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MTLTERLREKISRAFYNHGLLCASYPIPIILFTGFCILACCYPLLKLPLPGTGPVEFTTP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD VKDYSPPPVDSDRKQGEPTEQPEWYVGAPVAYVQQIFVKSSVFPWHKNLLAVDVFRSPLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 VKDYSPPPVDSDRKQGEPTEQPEWYVGAPVAYVQQIFVKSSVFPWHKNLLAVDVFRSPLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD RAFQLVEEIRNHVLRDSSGIRSLEELCLQVTDLLPGLRKLRNLLPEHGCLLLSPGNFWQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 RAFQLVEEIRNHVLRDSSGIRSLEELCLQVTDLLPGLRKLRNLLPEHGCLLLSPGNFWQN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD DWERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKYSGVSLYTRKRMVSYTITLVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 DWERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKYSGVSLYTRKRMVSYTITLVF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD QHYHAKFLGSLRARLMLLHPSPNCSLRAESLVHVHFKEEIGVAELIPLVTTYIILFAYIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 QHYHAKFLGSLRARLMLLHPSPNCSLRAESLVHVHFKEEIGVAELIPLVTTYIILFAYIY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD FSTRKIDMVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 FSTRKIDMVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLEN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD VLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIILIGYFTLVPAIQEFCLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 VLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIILIGYFTLVPAIQEFCLF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD AVVGLVSDFFLQMLFFTTVLSIDIRRMELADLNKRLPPEACLPSAKPVGQPTRYERQLAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 AVVGLVSDFFLQMLFFTTVLSIDIRRMELADLNKRLPPEACLPSAKPVGQPTRYERQLAV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD RPSTPHTITLQPSSFRNLRLPKRLRVVYFLARTRLAQRLIMAGTVVWIGILVYTDPAGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 RPSTPHTITLQPSSFRNLRLPKRLRVVYFLARTRLAQRLIMAGTVVWIGILVYTDPAGLR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD NYLAAQVTEQSPLGEGALAPMPVPSGMLPPSHPDPAFSIFPPDAPKLPENQTSPGESPER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 NYLAAQVTEQSPLGEGALAPMPVPSGMLPPSHPDPAFSIFPPDAPKLPENQTSPGESPER
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD GGPAEVVHDSPVPEVTWGPEDEELWRKLSFRHWPTLFSYYNITLAKRYISLLPVIPVTLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 GGPAEVVHDSPVPEVTWGPEDEELWRKLSFRHWPTLFSYYNITLAKRYISLLPVIPVTLR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD LNPREALEGRHPQDGRSAWPPPGPIPAGHWEAGPKGPGGVQAHGDVTLYKVAALGLATGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LNPREALEGRHPQDGRSAWPPPGPIPAGHWEAGPKGPGGVQAHGDVTLYKVAALGLATGI
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KSD VLVLLLLCLYRVLCPRNYGQLGGGPGRRRRGELPCDDYGYAPPETEIVPLVLRGHLMDIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 VLVLLLLCLYRVLCPRNYGQLGGGPGRRRRGELPCDDYGYAPPETEIVPLVLRGHLMDIE
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KSD CLASDGMLLVSCCLAGHVCVWDAQTGDCLTRIPRPGRQRRDSGVGSGLEAQESWERLSDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 CLASDGMLLVSCCLAGHVCVWDAQTGDCLTRIPRPGRQRRDSGVGSGLEAQESWERLSDG
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KSD GKAGPEEPGDSPPLRHRPRGPPPPSLFGDQPDLTCLIDTNFSAQPRSSQPTQPEPRHRAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 GKAGPEEPGDSPPLRHRPRGPPPPSLFGDQPDLTCLIDTNFSAQPRSSQPTQPEPRHRAV
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KSD CGRSRDSPGYDFSCLVQRVYQEEGLAAVCTPALRPPSPGPVLSQAPEDEGGSPEKGSPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 CGRSRDSPGYDFSCLVQRVYQEEGLAAVCTPALRPPSPGPVLSQAPEDEGGSPEKGSPSL
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KSD AWAPSAEGSIWSLELQGNLIVVGRSSGRLEVWDAIEGVLCCSSEEVSSGITALVFLDKRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 AWAPSAEGSIWSLELQGNLIVVGRSSGRLEVWDAIEGVLCCSSEEVSSGITALVFLDKRI
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KSD VAARLNGSLDFFSLETHTALSPLQFRGTPGRGSSPASPVYSSSDTVACHLTHTVPCAHQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 VAARLNGSLDFFSLETHTALSPLQFRGTPGRGSSPASPVYSSSDTVACHLTHTVPCAHQK
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KSD PITALKAAAGRLVTGSQDHTLRVFRLEDSCCLFTLQGHSGAITTVYIDQTMVLASGGQDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 PITALKAAAGRLVTGSQDHTLRVFRLEDSCCLFTLQGHSGAITTVYIDQTMVLASGGQDG
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KSD AICLWDVLTGSRVSHVFAHRGDVTSLTCTTSCVISSGLDDLISIWDRSTGIKFYSIQQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 AICLWDVLTGSRVSHVFAHRGDVTSLTCTTSCVISSGLDDLISIWDRSTGIKFYSIQQDL
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KSD GCGASLGVISDNLLVTGGQGCVSFWDLNYGDLLQTVYLGKNSEAQPARQILVLDNAAIVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 GCGASLGVISDNLLVTGGQGCVSFWDLNYGDLLQTVYLGKNSEAQPARQILVLDNAAIVC
             1210      1220      1230      1240      1250      1260

             1270         
pF1KSD NFGSELSLVYVPSVLEKLD
       :::::::::::::::::::
CCDS27 NFGSELSLVYVPSVLEKLD
             1270         




1279 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:36:23 2016 done: Thu Nov  3 00:36:23 2016
 Total Scan time:  4.860 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]