Result of FASTA (ccds) for
pF1KSDA0200
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0200, 1016 aa
1>>>pF1KSDA0200 1016 - 1016 aa - 1016 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.9068+/-0.00103; mu= -6.7377+/- 0.062
mean_var=388.0388+/-79.087, 0's: 0 Z-trim(115.2): 48 B-trim: 0 in 0/55
Lambda= 0.065108
statistics sampled from 15716 (15757) to 15716 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.484), width: 16
Scan time: 4.960
The best scores are: opt bits E(32554)
CCDS34315.1 MAML1 gene_id:9794|Hs108|chr5 (1016) 6904 663.2 7.4e-190
CCDS54805.1 MAML3 gene_id:55534|Hs108|chr4 (1138) 1021 110.7 1.8e-23
>>CCDS34315.1 MAML1 gene_id:9794|Hs108|chr5 (1016 aa)
initn: 6904 init1: 6904 opt: 6904 Z-score: 3522.0 bits: 663.2 E(32554): 7.4e-190
Smith-Waterman score: 6904; 100.0% identity (100.0% similar) in 1016 aa overlap (1-1016:1-1016)
10 20 30 40 50 60
pF1KSD MVLPTCPMAEFALPRHSAVMERLRRRIELCRRHHSTCEARYEAVSPERLELERQHTFALH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MVLPTCPMAEFALPRHSAVMERLRRRIELCRRHHSTCEARYEAVSPERLELERQHTFALH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD QRCIQAKAKRAGKHRQPPAATAPAPAAPAPRLDAADGPEHGRPATHLHDTVKRNLDSATS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QRCIQAKAKRAGKHRQPPAATAPAPAAPAPRLDAADGPEHGRPATHLHDTVKRNLDSATS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PQNGDQQNGYGDLFPGHKKTRREAPLGVAISSNGLPPASPLGQSDKPSGADALQSSGKHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PQNGDQQNGYGDLFPGHKKTRREAPLGVAISSNGLPPASPLGQSDKPSGADALQSSGKHS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LGLDSLNKKRLADSSLHLNGGSNPSESFPLSLNKELKQEPVEDLPCMITGTVGSISQSNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LGLDSLNKKRLADSSLHLNGGSNPSESFPLSLNKELKQEPVEDLPCMITGTVGSISQSNL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD MPDLNLNEQEWKELIEELNRSVPDEDMKDLFNEDFEEKKDPESSGSATQTPLAQDINIKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MPDLNLNEQEWKELIEELNRSVPDEDMKDLFNEDFEEKKDPESSGSATQTPLAQDINIKT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD EFSPAAFEQEQLGSPQVRAGSAGQTFLGPSSAPVSTDSPSLGGSQTLFHTSGQPRADNPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EFSPAAFEQEQLGSPQVRAGSAGQTFLGPSSAPVSTDSPSLGGSQTLFHTSGQPRADNPS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD PNLMPASAQAQNAQRALAGVVLPSQGPGGASELSSAHQLQQIAAKQKREQMLQNPQQATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PNLMPASAQAQNAQRALAGVVLPSQGPGGASELSSAHQLQQIAAKQKREQMLQNPQQATP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD APAPGQMSTWQQTGPSHSSLDVPYPMEKPASPSSYKQDFTNSKLLMMPSVNKSSPRPGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 APAPGQMSTWQQTGPSHSSLDVPYPMEKPASPSSYKQDFTNSKLLMMPSVNKSSPRPGGP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD YLQPSHVNLLSHQPPSNLNQNSANNQGSVLDYGNTKPLSHYKADCGQGSPGSGQSKPALM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YLQPSHVNLLSHQPPSNLNQNSANNQGSVLDYGNTKPLSHYKADCGQGSPGSGQSKPALM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD AYLPQQLSHISHEQNSLFLMKPKPGNMPFRSLVPPGQEQNPSSVPVQAQATSVGTQPPAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AYLPQQLSHISHEQNSLFLMKPKPGNMPFRSLVPPGQEQNPSSVPVQAQATSVGTQPPAV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD SVASSHNSSPYLSSQQQAAVMKQHQLLLDQQKQREQQQKHLQQQQFLQRQQHLLAEQEKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SVASSHNSSPYLSSQQQAAVMKQHQLLLDQQKQREQQQKHLQQQQFLQRQQHLLAEQEKQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD QFQRHLTRPPPQYQDPTQGSFPQQVGQFTGSSAAVPGMNTLGPSNSSCPRVFPQAGNLMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QFQRHLTRPPPQYQDPTQGSFPQQVGQFTGSSAAVPGMNTLGPSNSSCPRVFPQAGNLMP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD MGPGHASVSSLPTNSGQQDRGVAQFPGSQNMPQSSLYGMASGITQIVAQPPPQATNGHAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MGPGHASVSSLPTNSGQQDRGVAQFPGSQNMPQSSLYGMASGITQIVAQPPPQATNGHAH
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD IPRQTNVGQNTSVSAAYGQNSLGSSGLSQQHNKGTLNPGLTKPPVPRVSPAMGGQNSSWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IPRQTNVGQNTSVSAAYGQNSLGSSGLSQQHNKGTLNPGLTKPPVPRVSPAMGGQNSSWQ
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD HQGMPNLSGQTPGNSNVSPFTAASSFHMQQQAHLKMSSPQFSQAVPNRPMAPMSSAAAVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HQGMPNLSGQTPGNSNVSPFTAASSFHMQQQAHLKMSSPQFSQAVPNRPMAPMSSAAAVG
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD SLLPPVSAQQRTSAPAPAPPPTAPQQGLPGLSPAGPELGAFSQSPASQMGGRAGLHCTQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SLLPPVSAQQRTSAPAPAPPPTAPQQGLPGLSPAGPELGAFSQSPASQMGGRAGLHCTQA
910 920 930 940 950 960
970 980 990 1000 1010
pF1KSD YPVRTAGQELPFAYSGQPGGSGLSSVAGHTDLIDSLLKNRTSEEWMSDLDDLLGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YPVRTAGQELPFAYSGQPGGSGLSSVAGHTDLIDSLLKNRTSEEWMSDLDDLLGSQ
970 980 990 1000 1010
>>CCDS54805.1 MAML3 gene_id:55534|Hs108|chr4 (1138 aa)
initn: 882 init1: 366 opt: 1021 Z-score: 534.9 bits: 110.7 E(32554): 1.8e-23
Smith-Waterman score: 1797; 35.8% identity (63.4% similar) in 1075 aa overlap (12-981:66-1104)
10 20 30 40
pF1KSD MVLPTCPMAEFALPRHSAVMERLRRRIELCRRHHSTCEARY
:.:.::.:.::::.::: ::::: .:: ::
CCDS54 TPNSTPAAPSSNHPAAGGCGGSGGPGGGSAAVPKHSTVVERLRQRIEGCRRHHVNCENRY
40 50 60 70 80 90
50 60 70 80 90 100
pF1KSD EAVSPERLELERQHTFALHQRCIQAKAKRAGKHRQPPAATAPAPAAPAPRLDAADGPEHG
. .. :.:::::. : .:.:: .. .::..: .. :. : .::.. ...
CCDS54 QQAQVEQLELERRDTVSLYQRTLEQRAKKSGAG----TGKQQHPSKPQQDAEAASAEQRN
100 110 120 130 140 150
110 120 130 140 150
pF1KSD RPATHLHDTVKRNLDSATSPQNGDQQNGY--GDLFPGHKKTRREAPLGV-AI----SSNG
. :..::::.:..: :: ::::::: :.. : :. :.. :. :: :.
CCDS54 HTLIMLQETVKRKLEGARSPLNGDQQNGACDGNFSPTSKRIRKDISAGMEAINNLPSNMP
160 170 180 190 200 210
160 170 180 190 200 210
pF1KSD LPPASPLGQSD-KPSGADALQSSGKHSLGL-DSLNKK-RLADSSLHLNGGSNPSESFPLS
:: :::: : : ::: ::.:: :. :: ..:.:. :: . .: .:: :. .:: .
CCDS54 LPSASPLHQLDLKPSL--PLQNSGTHTPGLLEDLSKNGRLPEIKLPVNGCSDLEDSFTIL
220 230 240 250 260
220 230 240 250 260 270
pF1KSD LNKELKQEPVEDLPCMITGTVGSISQSNLMPDLNLNEQEWKELIEELNRSVPDEDMKDLF
.:.:::::..: :. :. .. .:..:. :.:::.:::.:::.:: .::..:..:::
CCDS54 QSKDLKQEPLDDPTCIDTSETSLSNQNKLFSDINLNDQEWQELIDELANTVPEDDIQDLF
270 280 290 300 310 320
280 290 300 310 320 330
pF1KSD NEDFEEKKDPESSGSATQTPLAQD-INIKTEFSPAAFEQEQLGSPQVRAGSAGQTFLGPS
::::::::.:: : ::.:::.:. ..:.. : . : . ..::::.: .:.: : :
CCDS54 NEDFEEKKEPEFSQPATETPLSQESASVKSDPSHSPFAHVSMGSPQARPSSSGPPF---S
330 340 350 360 370 380
340 350 360 370 380
pF1KSD SAPVSTDSPSLGGSQTLFHTSGQPR---ADNP-SPNLMPASAQAQNAQRALAGVVL-PS-
.. ..:. ::.... . . ...: ...: .:: : . .: : : .: :.
CCDS54 TVSTATSLPSVASTPAAPNPASSPANCAVQSPQTPN--QAHTPGQAPPRPGNGYLLNPAA
390 400 410 420 430 440
390 400 410
pF1KSD -------QGPGG--ASELSSAHQLQQIAAKQKR-------------------EQMLQNPQ
.:: . .:..: :.::.:.::.:.. .:. :. :
CCDS54 VTVAGSASGPVAVPSSDMSPAEQLKQMAAQQQQRAKLMQQKQQQQQQQQQQQQQQQQQQQ
450 460 470 480 490 500
420 430 440 450 460 470
pF1KSD QATPAPAPGQMSTWQQTGPSHSSLDVPYPMEKPASPSSYKQDFTNSKLLMMPSVNKSSPR
: .: :.:. :: : . . ::: :: : : :.:.. .. : .:. .
CCDS54 QQQQQQHSNQTSNWSPLGPPSSPYGAAFTAEKPNSPMMYPQAFNNQNPIVPPMANNLQKT
510 520 530 540 550 560
480 490 500 510 520 530
pF1KSD PGGPYLQPSHVNLLSHQPPSNLNQNSANNQGSVLDYGNTKPLSHYKADCGQ--GSPGSGQ
. :: .:.:....:: .::. :: :.: ..: :::::::.:..:: .: : ..
CCDS54 TMNNYLPQNHMNMINQQP-NNLGTNSLNKQHNILTYGNTKPLTHFNADLSQRMTPPVANP
570 580 590 600 610 620
540 550 560
pF1KSD SKPALMAYLPQQL------------------------SHISHEQNSLFLMKPKP-GNMP-
.: :: :. :: .:.:..:. :.::: : :.:
CCDS54 NKNPLMPYIQQQQQQQQQQQQQQQQQQPPPPQLQAPRAHLSEDQKRLLLMKQKGVMNQPM
630 640 650 660 670 680
570 580 590 600 610 620
pF1KSD -FRSLVPPGQEQNPSSVPVQAQATSVGTQPPAVS--VASSHNSSP-YLSSQQQAAVMKQH
. .: ::::.: ..: .. . .. ::. . :... ..: .:.:: :::.::
CCDS54 AYAALPSHGQEQHPVGLP-RTTGPMQSSVPPGSGGMVSGASPAGPGFLGSQPQAAIMK--
690 700 710 720 730 740
630 640 650 660 670 680
pF1KSD QLLLDQQKQREQQQKHL----QQQQFLQRQQHLLAEQEKQQFQRHLTRPPPQYQDPTQGS
:.:.::. : .:::. :.:: :.::..::::. : : :: : :. .: ..
CCDS54 QMLIDQRAQLIEQQKQQFLREQRQQQQQQQQQILAEQQLQ--QSHL---PRQHLQPQRNP
750 760 770 780 790
690 700 710 720 730
pF1KSD FP-QQVGQFTGSS---AAVPGMNTLGPSNSSCPRVFPQAGNLMPMGPGHASVSSLPTNSG
.: :::.:: :: ::: .. .: .: :.. : ...: .::.. . ... : ..
CCDS54 YPVQQVNQFQGSPQDIAAVRSQAALQSMRTS--RLMAQNAGMMGIGPSQ-NPGTMATAAA
800 810 820 830 840 850
740 750 760 770 780 790
pF1KSD QQDRGVAQFPGSQNMPQSSLYGMASGITQIVAQPPPQA----TNGHAHIPRQTNVGQNTS
:.. :.: . .. : ..:.:..:.::.. : : :. :...:. ::: ::...
CCDS54 QSEMGLAPY-STTPTSQPGMYNMSTGMTQML-QHPNQSGMSITHNQAQGPRQPASGQGVG
860 870 880 890 900 910
800 810 820 830 840
pF1KSD VSAAYGQNSLGSSGLSQQHN--KGTLNPGLTKPPVP-RVSPAMGG--QNS-SWQHQGMPN
. ...::. : .:...::: :: .. .: .: .: :.. :: :.. :::.... .
CCDS54 MVSGFGQSMLVNSAITQQHPQMKGPVGQALPRPQAPPRLQSLMGTVQQGAQSWQQRSLQG
920 930 940 950 960 970
850 860 870 880 890 900
pF1KSD LSGQTPGNSNVSPFTAASSFHMQQ-QAHL-KMSSPQ-FSQAV--PNRPMAPMSSAAAVG-
. :.: : ...::. ..:. .: : .: :. :: .::.: : . . ::.:
CCDS54 MPGRTSG--ELGPFNNGASYPLQAGQPRLTKQHFPQGLSQSVVDANTGTVRTLNPAAMGR
980 990 1000 1010 1020
910 920 930 940 950
pF1KSD SLLPPVSAQQRTSAPAPAPPPTAPQQGLPGLSPAGPELGAFSQSPASQM---GGRAGLHC
...: . .:: :: : . ::: . : . :::: ::.:. :. :
CCDS54 QMMPSLPGQQGTSQARPMV--------MSGLSQGVPGMPAFSQPPAQQQIPSGSFAPSSQ
1030 1040 1050 1060 1070 1080
960 970 980 990 1000 1010
pF1KSD TQAYPVRTAGQELPFAYSGQ-PGGSGLSSVAGHTDLIDSLLKNRTSEEWMSDLDDLLGSQ
.::: :.: :.. . :::. :::
CCDS54 SQAYE-RNAPQDVSYNYSGDGAGGSFPGLPDGADLVDSIIKGGPGDEWMQELDELFGNP
1090 1100 1110 1120 1130
1016 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:37:07 2016 done: Thu Nov 3 00:37:08 2016
Total Scan time: 4.960 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]