Result of FASTA (ccds) for
pF1KSDA0210
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0210, 795 aa
1>>>pF1KSDA0210 795 - 795 aa - 795 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5111+/-0.000904; mu= 11.3464+/- 0.055
mean_var=138.4984+/-27.903, 0's: 0 Z-trim(110.0): 24 B-trim: 301 in 1/52
Lambda= 0.108981
statistics sampled from 11280 (11296) to 11280 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.347), width: 16
Scan time: 4.040
The best scores are: opt bits E(32554)
CCDS33714.1 TBC1D5 gene_id:9779|Hs108|chr3 ( 795) 5283 842.6 0
CCDS46770.1 TBC1D5 gene_id:9779|Hs108|chr3 ( 817) 3576 574.2 3e-163
>>CCDS33714.1 TBC1D5 gene_id:9779|Hs108|chr3 (795 aa)
initn: 5283 init1: 5283 opt: 5283 Z-score: 4495.1 bits: 842.6 E(32554): 0
Smith-Waterman score: 5283; 100.0% identity (100.0% similar) in 795 aa overlap (1-795:1-795)
10 20 30 40 50 60
pF1KSD MYHSLSETRHPLQPEEQEVGIDPLSSYSNKSGGDSNKNGRRTSSTLDSEGTFNSYRKEWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MYHSLSETRHPLQPEEQEVGIDPLSSYSNKSGGDSNKNGRRTSSTLDSEGTFNSYRKEWE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD ELFVNNNYLATIRQKGINGQLRSSRFRSICWKLFLCVLPQDKSQWISRIEELRAWYSNIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ELFVNNNYLATIRQKGINGQLRSSRFRSICWKLFLCVLPQDKSQWISRIEELRAWYSNIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EIHITNPRKVVGQQDLMINNPLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEMQFFQQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EIHITNPRKVVGQQDLMINNPLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEMQFFQQE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD NVRKILTDVLFCYARENEQLLYKQGMHELLAPIVFVLHCDHQAFLHASESAQPSEEMKTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NVRKILTDVLFCYARENEQLLYKQGMHELLAPIVFVLHCDHQAFLHASESAQPSEEMKTV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD LNPEYLEHDAYAVFSQLMETAEPWFSTFEHDGQKGKETLMTPIPFARPQDLGPTIAIVTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LNPEYLEHDAYAVFSQLMETAEPWFSTFEHDGQKGKETLMTPIPFARPQDLGPTIAIVTK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD VNQIQDHLLKKHDIELYMHLNRLEIAPQIYGLRWVRLLFGREFPLQDLLVVWDALFADGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VNQIQDHLLKKHDIELYMHLNRLEIAPQIYGLRWVRLLFGREFPLQDLLVVWDALFADGL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SLGLVDYIFVAMLLYIRDALISSNYQTCLGLLMHYPFIGDVHSLILKALFLRDPKRNPRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SLGLVDYIFVAMLLYIRDALISSNYQTCLGLLMHYPFIGDVHSLILKALFLRDPKRNPRP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD VTYQFHPNLDYYKARGADLMNKSRTNAKGAPLNINKVSNSLINFGRKLISPAMAPGSAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VTYQFHPNLDYYKARGADLMNKSRTNAKGAPLNINKVSNSLINFGRKLISPAMAPGSAGG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD PVPGGNSSSSSSVVIPTRTSAEAPSHHLQQQQQQQRLMKSESMPVQLNKGLSSKNISSSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PVPGGNSSSSSSVVIPTRTSAEAPSHHLQQQQQQQRLMKSESMPVQLNKGLSSKNISSSP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD SVESLPGGREFTGSPPSSATKKDSFFSNISRSRSHSKTMGRKESEEELEAQISFLQGQLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SVESLPGGREFTGSPPSSATKKDSFFSNISRSRSHSKTMGRKESEEELEAQISFLQGQLN
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD DLDAMCKYCAKVMDTHLVNIQDVILQENLEKEDQILVSLAGLKQIKDILKGSLRFNQSQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DLDAMCKYCAKVMDTHLVNIQDVILQENLEKEDQILVSLAGLKQIKDILKGSLRFNQSQL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD EAEENEQITIADNHYCSSGQGQGRGQGQSVQMSGAIKQASSETPGCTDRGNSDDFILISK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EAEENEQITIADNHYCSSGQGQGRGQGQSVQMSGAIKQASSETPGCTDRGNSDDFILISK
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD DDDGSSARGSFSGQAQPLRTLRSTSGKSQAPVCSPLVFSDPLMGPASASSSNPSSSPDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DDDGSSARGSFSGQAQPLRTLRSTSGKSQAPVCSPLVFSDPLMGPASASSSNPSSSPDDD
730 740 750 760 770 780
790
pF1KSD SSKDSGFTIVSPLDI
:::::::::::::::
CCDS33 SSKDSGFTIVSPLDI
790
>>CCDS46770.1 TBC1D5 gene_id:9779|Hs108|chr3 (817 aa)
initn: 3592 init1: 3564 opt: 3576 Z-score: 3044.4 bits: 574.2 E(32554): 3e-163
Smith-Waterman score: 5229; 97.3% identity (97.3% similar) in 817 aa overlap (1-795:1-817)
10 20 30 40 50 60
pF1KSD MYHSLSETRHPLQPEEQEVGIDPLSSYSNKSGGDSNKNGRRTSSTLDSEGTFNSYRKEWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MYHSLSETRHPLQPEEQEVGIDPLSSYSNKSGGDSNKNGRRTSSTLDSEGTFNSYRKEWE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD ELFVNNNYLATIRQKGINGQLRSSRFRSICWKLFLCVLPQDKSQWISRIEELRAWYSNIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ELFVNNNYLATIRQKGINGQLRSSRFRSICWKLFLCVLPQDKSQWISRIEELRAWYSNIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EIHITNPRKVVGQQDLMINNPLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEMQFFQQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EIHITNPRKVVGQQDLMINNPLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEMQFFQQE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD NVRKILTDVLFCYARENEQLLYKQGMHELLAPIVFVLHCDHQAFLHASESAQPSEEMKTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NVRKILTDVLFCYARENEQLLYKQGMHELLAPIVFVLHCDHQAFLHASESAQPSEEMKTV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD LNPEYLEHDAYAVFSQLMETAEPWFSTFEHDGQKGKETLMTPIPFARPQDLGPTIAIVTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LNPEYLEHDAYAVFSQLMETAEPWFSTFEHDGQKGKETLMTPIPFARPQDLGPTIAIVTK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD VNQIQDHLLKKHDIELYMHLNRLEIAPQIYGLRWVRLLFGREFPLQDLLVVWDALFADGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VNQIQDHLLKKHDIELYMHLNRLEIAPQIYGLRWVRLLFGREFPLQDLLVVWDALFADGL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SLGLVDYIFVAMLLYIRDALISSNYQTCLGLLMHYPFIGDVHSLILKALFLRDPKRNPRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SLGLVDYIFVAMLLYIRDALISSNYQTCLGLLMHYPFIGDVHSLILKALFLRDPKRNPRP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD VTYQFHPNLDYYKARGADLMNKSRTNAKGAPLNINKVSNSLINFGRKLISPAMAPGSAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VTYQFHPNLDYYKARGADLMNKSRTNAKGAPLNINKVSNSLINFGRKLISPAMAPGSAGG
430 440 450 460 470 480
490 500 510 520 530
pF1KSD PVPGGNSSSSSSVVIPTRTSAEAPSHHLQQQQQQQRLMKSESMPVQLNKG----------
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PVPGGNSSSSSSVVIPTRTSAEAPSHHLQQQQQQQRLMKSESMPVQLNKGDVVTGSDAQV
490 500 510 520 530 540
540 550 560 570
pF1KSD ------------LSSKNISSSPSVESLPGGREFTGSPPSSATKKDSFFSNISRSRSHSKT
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SVPVQTLTDLQGLSSKNISSSPSVESLPGGREFTGSPPSSATKKDSFFSNISRSRSHSKT
550 560 570 580 590 600
580 590 600 610 620 630
pF1KSD MGRKESEEELEAQISFLQGQLNDLDAMCKYCAKVMDTHLVNIQDVILQENLEKEDQILVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MGRKESEEELEAQISFLQGQLNDLDAMCKYCAKVMDTHLVNIQDVILQENLEKEDQILVS
610 620 630 640 650 660
640 650 660 670 680 690
pF1KSD LAGLKQIKDILKGSLRFNQSQLEAEENEQITIADNHYCSSGQGQGRGQGQSVQMSGAIKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LAGLKQIKDILKGSLRFNQSQLEAEENEQITIADNHYCSSGQGQGRGQGQSVQMSGAIKQ
670 680 690 700 710 720
700 710 720 730 740 750
pF1KSD ASSETPGCTDRGNSDDFILISKDDDGSSARGSFSGQAQPLRTLRSTSGKSQAPVCSPLVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ASSETPGCTDRGNSDDFILISKDDDGSSARGSFSGQAQPLRTLRSTSGKSQAPVCSPLVF
730 740 750 760 770 780
760 770 780 790
pF1KSD SDPLMGPASASSSNPSSSPDDDSSKDSGFTIVSPLDI
:::::::::::::::::::::::::::::::::::::
CCDS46 SDPLMGPASASSSNPSSSPDDDSSKDSGFTIVSPLDI
790 800 810
795 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:40:58 2016 done: Thu Nov 3 00:40:59 2016
Total Scan time: 4.040 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]