FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0218, 761 aa
  1>>>pF1KSDA0218 761 - 761 aa - 761 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5224+/-0.000883; mu= 10.6203+/- 0.053
 mean_var=132.8046+/-26.346, 0's: 0 Z-trim(111.4): 21  B-trim: 211 in 1/50
 Lambda= 0.111293
 statistics sampled from 12346 (12362) to 12346 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.38), width:  16
 Scan time:  2.990

The best scores are:                                      opt bits E(32554)
CCDS33698.1 TATDN2 gene_id:9797|Hs108|chr3         ( 761) 5139 836.8       0


>>CCDS33698.1 TATDN2 gene_id:9797|Hs108|chr3              (761 aa)
 initn: 5139 init1: 5139 opt: 5139  Z-score: 4464.4  bits: 836.8 E(32554):    0
Smith-Waterman score: 5139; 99.9% identity (99.9% similar) in 761 aa overlap (1-761:1-761)

               10        20        30        40        50        60
pF1KSD MASERGKVKHNWSSTSEGCPRKRSCLREPCDVAPSSRPAQRSASRSGGPSSPKRLKAQKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MASERGKVKHNWSSTSEGCPRKRSCLREPCDVAPSSRPAQRSASRSGGPSSPKRLKAQKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD DDVACSRRLSWGSSRRRNNSSSSFSPHFLGPGVGGAASKGCLIRNTRGFLSSGGSPLRPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DDVACSRRLSWGSSRRRNNSSSSFSPHFLGPGVGGAASKGCLIRNTRGFLSSGGSPLRPA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD NASLEEMASLEEEACSLKVDSKDSSHNSTNSEFAAEAEGQNDTIEEPNKVQKRKRDRLRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NASLEEMASLEEEACSLKVDSKDSSHNSTNSEFAAEAEGQNDTIEEPNKVQKRKRDRLRD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD QGSTMIYLKAIQGILGKSMPKRKGEAATRAKPSAAEHPSHGEGPARSEGPAKTAEGAARS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QGSTMIYLKAIQGILGKSMPKRKGEAATRAKPSAAEHPSHGEGPARSEGPAKTAEGAARS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD VTVTAAQKEKDATPEVSMEEDKTVPERSSFYDRRVVIDPQEKPSEEPLGDRRTVIDKCSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VTVTAAQKEKDATPEVSMEEDKTVPERSSFYDRRVVIDPQEKPSEEPLGDRRTVIDKCSP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD PLEFLDDSDSHLEIQKHKDREVVMEHPSSGSDWSDVEEISTVRFSQEEPVSLKPSAVLEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS33 PLEFLDDSDSHLEIQKHKDREVVMEHPSSGSDWSDVEEISTVRFSQEEPVSLKPSAVPEP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SSFTTDYVMYPPHLYSSPWCDYASYWTSSPKPSSYPSTGSSSNDAAQVGKSSRSRMSDYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SSFTTDYVMYPPHLYSSPWCDYASYWTSSPKPSSYPSTGSSSNDAAQVGKSSRSRMSDYS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD PNSTGSVQNTSRDMEASEEGWSQNSRSFRFSRSSEEREVKEKRTFQEEMPPRPCGGHASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PNSTGSVQNTSRDMEASEEGWSQNSRSFRFSRSSEEREVKEKRTFQEEMPPRPCGGHASS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD SLPKSHLEPSLEEGFIDTHCHLDMLYSKLSFQGTFTKFRKIYSSSFPKEFQGCISDFCDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SLPKSHLEPSLEEGFIDTHCHLDMLYSKLSFQGTFTKFRKIYSSSFPKEFQGCISDFCDP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD RTLTDCLWEELLKEDLVWGAFGCHPHFARYYSESQERNLLQALRHPKAVAFGEMGLDYSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RTLTDCLWEELLKEDLVWGAFGCHPHFARYYSESQERNLLQALRHPKAVAFGEMGLDYSY
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD KCTTPVPEQHKVFERQLQLAVSLKKPLVIHCREADEDLLEIMKKFVPPDYKIHRHCFTGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KCTTPVPEQHKVFERQLQLAVSLKKPLVIHCREADEDLLEIMKKFVPPDYKIHRHCFTGS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KSD YPVIEPLLKYFPNMSVGFTAVLTYSSAWEAREALRQIPLERIIVETDAPYFLPRQVPKSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YPVIEPLLKYFPNMSVGFTAVLTYSSAWEAREALRQIPLERIIVETDAPYFLPRQVPKSL
              670       680       690       700       710       720

              730       740       750       760 
pF1KSD CQYAHPGLALHTVREIARVKDQPLSLTLAALRENTSRLYSL
       :::::::::::::::::::::::::::::::::::::::::
CCDS33 CQYAHPGLALHTVREIARVKDQPLSLTLAALRENTSRLYSL
              730       740       750       760 




761 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:45:07 2016 done: Thu Nov  3 00:45:08 2016
 Total Scan time:  2.990 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]