Result of FASTA (omim) for
pF1KSDA0237
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0237, 308 aa
1>>>pF1KSDA0237 308 - 308 aa - 308 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5376+/-0.000318; mu= 14.9613+/- 0.020
mean_var=88.7846+/-18.116, 0's: 0 Z-trim(117.0): 236 B-trim: 0 in 0/53
Lambda= 0.136115
statistics sampled from 28322 (28594) to 28322 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.335), width: 16
Scan time: 8.030
The best scores are: opt bits E(85289)
NP_055562 (OMIM: 611600) regulating synaptic membr ( 308) 1996 401.7 9.4e-112
XP_011540781 (OMIM: 611600) PREDICTED: regulating ( 312) 1545 313.2 4.4e-85
XP_006716761 (OMIM: 606630) PREDICTED: regulating ( 313) 1315 268.0 1.7e-71
XP_016869530 (OMIM: 606630) PREDICTED: regulating (1275) 1315 268.5 5e-71
XP_016869529 (OMIM: 606630) PREDICTED: regulating (1324) 1315 268.5 5.1e-71
XP_016869525 (OMIM: 606630) PREDICTED: regulating (1357) 1315 268.5 5.2e-71
XP_016869511 (OMIM: 606630) PREDICTED: regulating (1477) 1315 268.6 5.5e-71
XP_016869510 (OMIM: 606630) PREDICTED: regulating (1503) 1315 268.6 5.6e-71
XP_016869509 (OMIM: 606630) PREDICTED: regulating (1520) 1315 268.6 5.7e-71
XP_016869508 (OMIM: 606630) PREDICTED: regulating (1545) 1315 268.6 5.7e-71
XP_016869507 (OMIM: 606630) PREDICTED: regulating (1549) 1315 268.6 5.8e-71
XP_005251164 (OMIM: 606630) PREDICTED: regulating (1552) 1315 268.6 5.8e-71
XP_016869506 (OMIM: 606630) PREDICTED: regulating (1563) 1315 268.6 5.8e-71
XP_016869505 (OMIM: 606630) PREDICTED: regulating (1574) 1315 268.6 5.8e-71
XP_005251163 (OMIM: 606630) PREDICTED: regulating (1574) 1315 268.6 5.8e-71
XP_016869504 (OMIM: 606630) PREDICTED: regulating (1579) 1315 268.6 5.8e-71
XP_016869503 (OMIM: 606630) PREDICTED: regulating (1589) 1315 268.6 5.9e-71
XP_016869502 (OMIM: 606630) PREDICTED: regulating (1607) 1315 268.6 5.9e-71
XP_016869501 (OMIM: 606630) PREDICTED: regulating (1610) 1315 268.6 5.9e-71
XP_016869500 (OMIM: 606630) PREDICTED: regulating (1621) 1315 268.6 6e-71
XP_016869499 (OMIM: 606630) PREDICTED: regulating (1625) 1315 268.6 6e-71
XP_016869498 (OMIM: 606630) PREDICTED: regulating (1637) 1315 268.6 6e-71
XP_016869497 (OMIM: 606630) PREDICTED: regulating (1672) 1315 268.6 6.1e-71
XP_016869496 (OMIM: 606630) PREDICTED: regulating (1675) 1315 268.6 6.1e-71
XP_016869495 (OMIM: 606630) PREDICTED: regulating (1705) 1315 268.6 6.2e-71
XP_011515697 (OMIM: 606630) PREDICTED: regulating (1710) 1315 268.6 6.2e-71
XP_016866046 (OMIM: 603649,606629) PREDICTED: regu ( 342) 1295 264.1 2.8e-70
XP_016866047 (OMIM: 603649,606629) PREDICTED: regu ( 342) 1295 264.1 2.8e-70
XP_016866045 (OMIM: 603649,606629) PREDICTED: regu ( 398) 1291 263.4 5.4e-70
XP_016866038 (OMIM: 603649,606629) PREDICTED: regu ( 937) 1291 263.7 1e-69
XP_016866037 (OMIM: 603649,606629) PREDICTED: regu ( 938) 1291 263.7 1e-69
XP_016866036 (OMIM: 603649,606629) PREDICTED: regu ( 979) 1291 263.7 1.1e-69
XP_016866035 (OMIM: 603649,606629) PREDICTED: regu ( 980) 1291 263.7 1.1e-69
XP_016866034 (OMIM: 603649,606629) PREDICTED: regu ( 982) 1291 263.7 1.1e-69
XP_016866032 (OMIM: 603649,606629) PREDICTED: regu ( 988) 1291 263.7 1.1e-69
XP_016866033 (OMIM: 603649,606629) PREDICTED: regu ( 988) 1291 263.7 1.1e-69
XP_016866031 (OMIM: 603649,606629) PREDICTED: regu ( 989) 1291 263.7 1.1e-69
XP_016866030 (OMIM: 603649,606629) PREDICTED: regu ( 998) 1291 263.7 1.1e-69
XP_016866029 (OMIM: 603649,606629) PREDICTED: regu ( 999) 1291 263.7 1.1e-69
NP_001161879 (OMIM: 603649,606629) regulating syna (1012) 1291 263.7 1.1e-69
XP_016866028 (OMIM: 603649,606629) PREDICTED: regu (1013) 1291 263.7 1.1e-69
XP_016866027 (OMIM: 603649,606629) PREDICTED: regu (1014) 1291 263.7 1.1e-69
XP_016866026 (OMIM: 603649,606629) PREDICTED: regu (1040) 1291 263.7 1.1e-69
XP_016866025 (OMIM: 603649,606629) PREDICTED: regu (1044) 1291 263.7 1.1e-69
XP_016866024 (OMIM: 603649,606629) PREDICTED: regu (1073) 1291 263.7 1.1e-69
XP_016866023 (OMIM: 603649,606629) PREDICTED: regu (1074) 1291 263.7 1.1e-69
XP_011533913 (OMIM: 603649,606629) PREDICTED: regu (1463) 1291 263.8 1.4e-69
XP_016866018 (OMIM: 603649,606629) PREDICTED: regu (1464) 1291 263.8 1.4e-69
XP_016866017 (OMIM: 603649,606629) PREDICTED: regu (1473) 1291 263.8 1.5e-69
XP_016866016 (OMIM: 603649,606629) PREDICTED: regu (1514) 1291 263.9 1.5e-69
>>NP_055562 (OMIM: 611600) regulating synaptic membrane (308 aa)
initn: 1996 init1: 1996 opt: 1996 Z-score: 2127.3 bits: 401.7 E(85289): 9.4e-112
Smith-Waterman score: 1996; 99.7% identity (100.0% similar) in 308 aa overlap (1-308:1-308)
10 20 30 40 50 60
pF1KSD MFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGGAGTTTAKKRRSSLGAKMVAIVGLT
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
NP_055 MFNGEPGPASSGASRNVVRSSSISGEICGSQQAGGGAGTTTAKKRRSSLGAKMVAIVGLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD QWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTNSNSSDGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTNSNSSDGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD FIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEVEVIEARG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 FIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEVEVIEARG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD LTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEGPQGKVLQVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEGPQGKVLQVI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD VWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRRLSQSSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRRLSQSSLE
250 260 270 280 290 300
pF1KSD SATSPSCS
::::::::
NP_055 SATSPSCS
>>XP_011540781 (OMIM: 611600) PREDICTED: regulating syna (312 aa)
initn: 1545 init1: 1545 opt: 1545 Z-score: 1648.6 bits: 313.2 E(85289): 4.4e-85
Smith-Waterman score: 1545; 98.8% identity (99.2% similar) in 241 aa overlap (68-308:72-312)
40 50 60 70 80 90
pF1KSD GTTTAKKRRSSLGAKMVAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRS
:. : :::::::::::::::::::::::::
XP_011 CFGRSQLKPCANALGVCCWEAAPCDAEHQAQIHQFEGATKKLRSNIRRSTETGIAVEMRS
50 60 70 80 90 100
100 110 120 130 140 150
pF1KSD RVTRQGSRESTDGSTNSNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RVTRQGSRESTDGSTNSNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPM
110 120 130 140 150 160
160 170 180 190 200 210
pF1KSD GDVHIAIMDRSGQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDVHIAIMDRSGQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKT
170 180 190 200 210 220
220 230 240 250 260 270
pF1KSD CDPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CDPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLF
230 240 250 260 270 280
280 290 300
pF1KSD PTSSVADSTLGSLTRRLSQSSLESATSPSCS
:::::::::::::::::::::::::::::::
XP_011 PTSSVADSTLGSLTRRLSQSSLESATSPSCS
290 300 310
>>XP_006716761 (OMIM: 606630) PREDICTED: regulating syna (313 aa)
initn: 1290 init1: 1265 opt: 1315 Z-score: 1404.5 bits: 268.0 E(85289): 1.7e-71
Smith-Waterman score: 1315; 66.0% identity (88.8% similar) in 303 aa overlap (13-308:9-311)
10 20 30 40 50
pF1KSD MFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGG-----AGT--TTAKKRRSSLGAKM
...:...:.::.:..:. .. :. .:: :..:::::::::::
XP_006 MQSRQMGISGKNMTKSTSISGDMCSLEKNDGSQSDTAVGTLGTSGKKRRSSLGAKM
10 20 30 40 50
60 70 80 90 100 110
pF1KSD VAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTN
::::::.. :.:. :: : :.. :::::...::::::.:::::. .:::.:::::::: :
XP_006 VAIVGLSRKSRSASQLSQTEAGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMN
60 70 80 90 100 110
120 130 140 150 160 170
pF1KSD SNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEV
: ::.:..::: .::...::::::::::::::.::::::::: :::.....::..:::::
XP_006 SYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KSD EVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTKKTCDPLYQQALLFDEGPQ
:.:.::::. :::::.::: :.:::::.::.:.::::::...:: .::::: : :.:.::
XP_006 EIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQ
180 190 200 210 220 230
240 250 260 270 280 290
pF1KSD GKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRR
:::::.:::::::::::: :::.:::.::::.:: : ::.:::: ::..: ::. ::::
XP_006 GKVLQIIVWGDYGRMDHKSFMGVAQILLDELELSNMVIGWFKLFPPSSLVDPTLAPLTRR
240 250 260 270 280 290
300
pF1KSD LSQSSLESATSPSCS
:::::::.:.:: :
XP_006 ASQSSLESSTGPSYSRS
300 310
>>XP_016869530 (OMIM: 606630) PREDICTED: regulating syna (1275 aa)
initn: 1321 init1: 1265 opt: 1315 Z-score: 1396.2 bits: 268.5 E(85289): 5e-71
Smith-Waterman score: 1315; 66.0% identity (88.8% similar) in 303 aa overlap (13-308:971-1273)
10 20 30
pF1KSD MFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGG-----A
...:...:.::.:..:. .. :. .
XP_016 SYMSVQSERPGGNKKISVFTSKMQSRQMGISGKNMTKSTSISGDMCSLEKNDGSQSDTAV
950 960 970 980 990 1000
40 50 60 70 80 90
pF1KSD GT--TTAKKRRSSLGAKMVAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEM
:: :..:::::::::::::::::.. :.:. :: : :.. :::::...::::::.::::
XP_016 GTLGTSGKKRRSSLGAKMVAIVGLSRKSRSASQLSQTEAGGKKLRSTVQRSTETGLAVEM
1010 1020 1030 1040 1050 1060
100 110 120 130 140 150
pF1KSD RSRVTRQGSRESTDGSTNSNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATP
:. .:::.:::::::: :: ::.:..::: .::...::::::::::::::.:::::::::
XP_016 RNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATP
1070 1080 1090 1100 1110 1120
160 170 180 190 200 210
pF1KSD PMGDVHIAIMDRSGQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTK
:::.....::..::::::.:.::::. :::::.::: :.:::::.::.:.::::::...
XP_016 AMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVAR
1130 1140 1150 1160 1170 1180
220 230 240 250 260 270
pF1KSD KTCDPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYK
:: .::::: : :.:.:::::::.:::::::::::: :::.:::.::::.:: : ::.:
XP_016 KTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILLDELELSNMVIGWFK
1190 1200 1210 1220 1230 1240
280 290 300
pF1KSD LFPTSSVADSTLGSLTRRLSQSSLESATSPSCS
::: ::..: ::. :::: :::::::.:.:: :
XP_016 LFPPSSLVDPTLAPLTRRASQSSLESSTGPSYSRS
1250 1260 1270
>>XP_016869529 (OMIM: 606630) PREDICTED: regulating syna (1324 aa)
initn: 1302 init1: 1265 opt: 1315 Z-score: 1396.0 bits: 268.5 E(85289): 5.1e-71
Smith-Waterman score: 1315; 66.0% identity (88.8% similar) in 303 aa overlap (13-308:1020-1322)
10 20 30
pF1KSD MFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGG-----A
...:...:.::.:..:. .. :. .
XP_016 SYMSVQSERPGGNKKISVFTSKMQSRQMGISGKNMTKSTSISGDMCSLEKNDGSQSDTAV
990 1000 1010 1020 1030 1040
40 50 60 70 80 90
pF1KSD GT--TTAKKRRSSLGAKMVAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEM
:: :..:::::::::::::::::.. :.:. :: : :.. :::::...::::::.::::
XP_016 GTLGTSGKKRRSSLGAKMVAIVGLSRKSRSASQLSQTEAGGKKLRSTVQRSTETGLAVEM
1050 1060 1070 1080 1090 1100
100 110 120 130 140 150
pF1KSD RSRVTRQGSRESTDGSTNSNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATP
:. .:::.:::::::: :: ::.:..::: .::...::::::::::::::.:::::::::
XP_016 RNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATP
1110 1120 1130 1140 1150 1160
160 170 180 190 200 210
pF1KSD PMGDVHIAIMDRSGQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTK
:::.....::..::::::.:.::::. :::::.::: :.:::::.::.:.::::::...
XP_016 AMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVAR
1170 1180 1190 1200 1210 1220
220 230 240 250 260 270
pF1KSD KTCDPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYK
:: .::::: : :.:.:::::::.:::::::::::: :::.:::.::::.:: : ::.:
XP_016 KTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILLDELELSNMVIGWFK
1230 1240 1250 1260 1270 1280
280 290 300
pF1KSD LFPTSSVADSTLGSLTRRLSQSSLESATSPSCS
::: ::..: ::. :::: :::::::.:.:: :
XP_016 LFPPSSLVDPTLAPLTRRASQSSLESSTGPSYSRS
1290 1300 1310 1320
>>XP_016869525 (OMIM: 606630) PREDICTED: regulating syna (1357 aa)
initn: 1321 init1: 1265 opt: 1315 Z-score: 1395.8 bits: 268.5 E(85289): 5.2e-71
Smith-Waterman score: 1315; 66.0% identity (88.8% similar) in 303 aa overlap (13-308:1053-1355)
10 20 30
pF1KSD MFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGG-----A
...:...:.::.:..:. .. :. .
XP_016 SYMSVQSERPGGNKKISVFTSKMQSRQMGISGKNMTKSTSISGDMCSLEKNDGSQSDTAV
1030 1040 1050 1060 1070 1080
40 50 60 70 80 90
pF1KSD GT--TTAKKRRSSLGAKMVAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEM
:: :..:::::::::::::::::.. :.:. :: : :.. :::::...::::::.::::
XP_016 GTLGTSGKKRRSSLGAKMVAIVGLSRKSRSASQLSQTEAGGKKLRSTVQRSTETGLAVEM
1090 1100 1110 1120 1130 1140
100 110 120 130 140 150
pF1KSD RSRVTRQGSRESTDGSTNSNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATP
:. .:::.:::::::: :: ::.:..::: .::...::::::::::::::.:::::::::
XP_016 RNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATP
1150 1160 1170 1180 1190 1200
160 170 180 190 200 210
pF1KSD PMGDVHIAIMDRSGQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTK
:::.....::..::::::.:.::::. :::::.::: :.:::::.::.:.::::::...
XP_016 AMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVAR
1210 1220 1230 1240 1250 1260
220 230 240 250 260 270
pF1KSD KTCDPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYK
:: .::::: : :.:.:::::::.:::::::::::: :::.:::.::::.:: : ::.:
XP_016 KTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILLDELELSNMVIGWFK
1270 1280 1290 1300 1310 1320
280 290 300
pF1KSD LFPTSSVADSTLGSLTRRLSQSSLESATSPSCS
::: ::..: ::. :::: :::::::.:.:: :
XP_016 LFPPSSLVDPTLAPLTRRASQSSLESSTGPSYSRS
1330 1340 1350
>>XP_016869511 (OMIM: 606630) PREDICTED: regulating syna (1477 aa)
initn: 1302 init1: 1265 opt: 1315 Z-score: 1395.3 bits: 268.6 E(85289): 5.5e-71
Smith-Waterman score: 1315; 66.0% identity (88.8% similar) in 303 aa overlap (13-308:1173-1475)
10 20 30
pF1KSD MFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGG-----A
...:...:.::.:..:. .. :. .
XP_016 QWNKEDLQRRFSQDDTSVFTSKMQSRQMGISGKNMTKSTSISGDMCSLEKNDGSQSDTAV
1150 1160 1170 1180 1190 1200
40 50 60 70 80 90
pF1KSD GT--TTAKKRRSSLGAKMVAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEM
:: :..:::::::::::::::::.. :.:. :: : :.. :::::...::::::.::::
XP_016 GTLGTSGKKRRSSLGAKMVAIVGLSRKSRSASQLSQTEAGGKKLRSTVQRSTETGLAVEM
1210 1220 1230 1240 1250 1260
100 110 120 130 140 150
pF1KSD RSRVTRQGSRESTDGSTNSNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATP
:. .:::.:::::::: :: ::.:..::: .::...::::::::::::::.:::::::::
XP_016 RNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATP
1270 1280 1290 1300 1310 1320
160 170 180 190 200 210
pF1KSD PMGDVHIAIMDRSGQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTK
:::.....::..::::::.:.::::. :::::.::: :.:::::.::.:.::::::...
XP_016 AMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVAR
1330 1340 1350 1360 1370 1380
220 230 240 250 260 270
pF1KSD KTCDPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYK
:: .::::: : :.:.:::::::.:::::::::::: :::.:::.::::.:: : ::.:
XP_016 KTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILLDELELSNMVIGWFK
1390 1400 1410 1420 1430 1440
280 290 300
pF1KSD LFPTSSVADSTLGSLTRRLSQSSLESATSPSCS
::: ::..: ::. :::: :::::::.:.:: :
XP_016 LFPPSSLVDPTLAPLTRRASQSSLESSTGPSYSRS
1450 1460 1470
>>XP_016869510 (OMIM: 606630) PREDICTED: regulating syna (1503 aa)
initn: 1302 init1: 1265 opt: 1315 Z-score: 1395.2 bits: 268.6 E(85289): 5.6e-71
Smith-Waterman score: 1315; 66.0% identity (88.8% similar) in 303 aa overlap (13-308:1199-1501)
10 20 30
pF1KSD MFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGG-----A
...:...:.::.:..:. .. :. .
XP_016 SYMSVQSERPGGNKKISVFTSKMQSRQMGISGKNMTKSTSISGDMCSLEKNDGSQSDTAV
1170 1180 1190 1200 1210 1220
40 50 60 70 80 90
pF1KSD GT--TTAKKRRSSLGAKMVAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEM
:: :..:::::::::::::::::.. :.:. :: : :.. :::::...::::::.::::
XP_016 GTLGTSGKKRRSSLGAKMVAIVGLSRKSRSASQLSQTEAGGKKLRSTVQRSTETGLAVEM
1230 1240 1250 1260 1270 1280
100 110 120 130 140 150
pF1KSD RSRVTRQGSRESTDGSTNSNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATP
:. .:::.:::::::: :: ::.:..::: .::...::::::::::::::.:::::::::
XP_016 RNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATP
1290 1300 1310 1320 1330 1340
160 170 180 190 200 210
pF1KSD PMGDVHIAIMDRSGQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTK
:::.....::..::::::.:.::::. :::::.::: :.:::::.::.:.::::::...
XP_016 AMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVAR
1350 1360 1370 1380 1390 1400
220 230 240 250 260 270
pF1KSD KTCDPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYK
:: .::::: : :.:.:::::::.:::::::::::: :::.:::.::::.:: : ::.:
XP_016 KTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILLDELELSNMVIGWFK
1410 1420 1430 1440 1450 1460
280 290 300
pF1KSD LFPTSSVADSTLGSLTRRLSQSSLESATSPSCS
::: ::..: ::. :::: :::::::.:.:: :
XP_016 LFPPSSLVDPTLAPLTRRASQSSLESSTGPSYSRS
1470 1480 1490 1500
>>XP_016869509 (OMIM: 606630) PREDICTED: regulating syna (1520 aa)
initn: 1302 init1: 1265 opt: 1315 Z-score: 1395.2 bits: 268.6 E(85289): 5.7e-71
Smith-Waterman score: 1315; 66.0% identity (88.8% similar) in 303 aa overlap (13-308:1216-1518)
10 20 30
pF1KSD MFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGG-----A
...:...:.::.:..:. .. :. .
XP_016 SYMSVQSERPGGNKKISVFTSKMQSRQMGISGKNMTKSTSISGDMCSLEKNDGSQSDTAV
1190 1200 1210 1220 1230 1240
40 50 60 70 80 90
pF1KSD GT--TTAKKRRSSLGAKMVAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEM
:: :..:::::::::::::::::.. :.:. :: : :.. :::::...::::::.::::
XP_016 GTLGTSGKKRRSSLGAKMVAIVGLSRKSRSASQLSQTEAGGKKLRSTVQRSTETGLAVEM
1250 1260 1270 1280 1290 1300
100 110 120 130 140 150
pF1KSD RSRVTRQGSRESTDGSTNSNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATP
:. .:::.:::::::: :: ::.:..::: .::...::::::::::::::.:::::::::
XP_016 RNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATP
1310 1320 1330 1340 1350 1360
160 170 180 190 200 210
pF1KSD PMGDVHIAIMDRSGQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTK
:::.....::..::::::.:.::::. :::::.::: :.:::::.::.:.::::::...
XP_016 AMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVAR
1370 1380 1390 1400 1410 1420
220 230 240 250 260 270
pF1KSD KTCDPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYK
:: .::::: : :.:.:::::::.:::::::::::: :::.:::.::::.:: : ::.:
XP_016 KTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILLDELELSNMVIGWFK
1430 1440 1450 1460 1470 1480
280 290 300
pF1KSD LFPTSSVADSTLGSLTRRLSQSSLESATSPSCS
::: ::..: ::. :::: :::::::.:.:: :
XP_016 LFPPSSLVDPTLAPLTRRASQSSLESSTGPSYSRS
1490 1500 1510 1520
>>XP_016869508 (OMIM: 606630) PREDICTED: regulating syna (1545 aa)
initn: 1302 init1: 1265 opt: 1315 Z-score: 1395.1 bits: 268.6 E(85289): 5.7e-71
Smith-Waterman score: 1315; 66.0% identity (88.8% similar) in 303 aa overlap (13-308:1241-1543)
10 20 30
pF1KSD MFNGEPGPASSGASRNVVRSSSIGGEICGSQQAGGG-----A
...:...:.::.:..:. .. :. .
XP_016 SYMSVQSERPGGNKKISVFTSKMQSRQMGISGKNMTKSTSISGDMCSLEKNDGSQSDTAV
1220 1230 1240 1250 1260 1270
40 50 60 70 80 90
pF1KSD GT--TTAKKRRSSLGAKMVAIVGLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEM
:: :..:::::::::::::::::.. :.:. :: : :.. :::::...::::::.::::
XP_016 GTLGTSGKKRRSSLGAKMVAIVGLSRKSRSASQLSQTEAGGKKLRSTVQRSTETGLAVEM
1280 1290 1300 1310 1320 1330
100 110 120 130 140 150
pF1KSD RSRVTRQGSRESTDGSTNSNSSDGTFIFPTTRLGAESQFSDFLDGLGPAQIVGRQTLATP
:. .:::.:::::::: :: ::.:..::: .::...::::::::::::::.:::::::::
XP_016 RNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATP
1340 1350 1360 1370 1380 1390
160 170 180 190 200 210
pF1KSD PMGDVHIAIMDRSGQLEVEVIEARGLTPKPGSKSLPATYIKVYLLENGACLAKKKTKMTK
:::.....::..::::::.:.::::. :::::.::: :.:::::.::.:.::::::...
XP_016 AMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVAR
1400 1410 1420 1430 1440 1450
220 230 240 250 260 270
pF1KSD KTCDPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYK
:: .::::: : :.:.:::::::.:::::::::::: :::.:::.::::.:: : ::.:
XP_016 KTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILLDELELSNMVIGWFK
1460 1470 1480 1490 1500 1510
280 290 300
pF1KSD LFPTSSVADSTLGSLTRRLSQSSLESATSPSCS
::: ::..: ::. :::: :::::::.:.:: :
XP_016 LFPPSSLVDPTLAPLTRRASQSSLESSTGPSYSRS
1520 1530 1540
308 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:50:58 2016 done: Thu Nov 3 00:50:59 2016
Total Scan time: 8.030 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]