Result of FASTA (ccds) for
pF1KSDA0248
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0248, 1859 aa
1>>>pF1KSDA0248 1859 - 1859 aa - 1859 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.7943+/-0.00119; mu= 0.3085+/- 0.072
mean_var=310.0495+/-64.616, 0's: 0 Z-trim(110.4): 37 B-trim: 135 in 1/53
Lambda= 0.072838
statistics sampled from 11563 (11589) to 11563 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.356), width: 16
Scan time: 7.010
The best scores are: opt bits E(32554)
CCDS7533.1 GBF1 gene_id:8729|Hs108|chr10 (1859) 12326 1310.7 0
CCDS5346.1 CYTH3 gene_id:9265|Hs108|chr7 ( 399) 508 68.4 6.3e-11
>>CCDS7533.1 GBF1 gene_id:8729|Hs108|chr10 (1859 aa)
initn: 12326 init1: 12326 opt: 12326 Z-score: 7011.9 bits: 1310.7 E(32554): 0
Smith-Waterman score: 12326; 99.9% identity (100.0% similar) in 1859 aa overlap (1-1859:1-1859)
10 20 30 40 50 60
pF1KSD MVDKNIYIIQGEINIVVGAIKRNSRWSTHTPLDEERDPLLHSFGHLKEVLNSITELSEIE
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS75 MVDKNIYIIQGEINIVVGAIKRNARWSTHTPLDEERDPLLHSFGHLKEVLNSITELSEIE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD PNVFLRPFLEVIRSEDTTGPITGLALTSVNKFLSYALIDPTHEGTAEGMENMADAVTHAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PNVFLRPFLEVIRSEDTTGPITGLALTSVNKFLSYALIDPTHEGTAEGMENMADAVTHAR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD FVGTDPASDEVVLMKILQVLRTLLLTPVGAHLTNESVCEIMQSCFRICFEMRLSELLRKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FVGTDPASDEVVLMKILQVLRTLLLTPVGAHLTNESVCEIMQSCFRICFEMRLSELLRKS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD AEHTLVDMVQLLFTRLPQFKEEPKNYVGTNMKKLKMRAGGMSDSSKWKKQKRSPRPPRHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AEHTLVDMVQLLFTRLPQFKEEPKNYVGTNMKKLKMRAGGMSDSSKWKKQKRSPRPPRHM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD TKVTPGSELPTPNGTTLSSNLTGGMPFIDVPTPISSASSEAASAVVSPSTDSGLEFSSQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TKVTPGSELPTPNGTTLSSNLTGGMPFIDVPTPISSASSEAASAVVSPSTDSGLEFSSQT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD TSKEDLTDLEQPGSPGYSTATEPGSSELGVPEQPDLQEGTHVEKSQSASVESIPEVLEEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TSKEDLTDLEQPGSPGYSTATEPGSSELGVPEQPDLQEGTHVEKSQSASVESIPEVLEEC
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD TSPADHSDSASVHDMDYVNPRGVRFTQSSQKEGTALVPYGLPCIRELFRFLISLTNPHDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TSPADHSDSASVHDMDYVNPRGVRFTQSSQKEGTALVPYGLPCIRELFRFLISLTNPHDR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD HNSEVMIHMGLHLLTVALESAPVAQCQTLLGLIKDEMCRHLFQLLSIERLNLYAASLRVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 HNSEVMIHMGLHLLTVALESAPVAQCQTLLGLIKDEMCRHLFQLLSIERLNLYAASLRVC
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD FLLFESMREHLKFQMEMYIKKLMEIITVENPKMPYEMKEMALEAIVQLWRIPSFVTELYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FLLFESMREHLKFQMEMYIKKLMEIITVENPKMPYEMKEMALEAIVQLWRIPSFVTELYI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD NYDCDYYCSNLFEELTKLLSKNAFPVSGQLYTTHLLSLDALLTVIDSTEAHCQAKVLNSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NYDCDYYCSNLFEELTKLLSKNAFPVSGQLYTTHLLSLDALLTVIDSTEAHCQAKVLNSL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD TQQEKKETARPSCEIVDGTREASNTERTASDGKAVGMASDIPGLHLPGGGRLPPEHGKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TQQEKKETARPSCEIVDGTREASNTERTASDGKAVGMASDIPGLHLPGGGRLPPEHGKSG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD CSDLEEAVDSGADKKFARKPPRFSCLLPDPRELIEIKNKKKLLITGTEQFNQKPKKGIQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 CSDLEEAVDSGADKKFARKPPRFSCLLPDPRELIEIKNKKKLLITGTEQFNQKPKKGIQF
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD LQEKGLLTIPMDNTEVAQWLRENPRLDKKMIGEFVSDRKNIDLLESFVSTFSFQGLRLDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LQEKGLLTIPMDNTEVAQWLRENPRLDKKMIGEFVSDRKNIDLLESFVSTFSFQGLRLDE
730 740 750 760 770 780
790 800 810 820 830 840
pF1KSD ALRLYLEAFRLPGEAPVIQRLLEAFTERWMNCNGSPFANSDACFSLAYAVIMLNTDQHNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ALRLYLEAFRLPGEAPVIQRLLEAFTERWMNCNGSPFANSDACFSLAYAVIMLNTDQHNH
790 800 810 820 830 840
850 860 870 880 890 900
pF1KSD NVRKQNAPMTLEEFRKNLKGVNGGKDFEQDILEDMYHAIKNEEIVMPEEQTGLVRENYVW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NVRKQNAPMTLEEFRKNLKGVNGGKDFEQDILEDMYHAIKNEEIVMPEEQTGLVRENYVW
850 860 870 880 890 900
910 920 930 940 950 960
pF1KSD NVLLHRGATPEGIFLRVPTASYDLDLFTMTWGPTIAALSYVFDKSLEETIIQKAISGFRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NVLLHRGATPEGIFLRVPTASYDLDLFTMTWGPTIAALSYVFDKSLEETIIQKAISGFRK
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KSD CAMISAHYGLSDVFDNLIISLCKFTALSSESIENLPSVFGSNPKAHIAAKTVFHLAHRHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 CAMISAHYGLSDVFDNLIISLCKFTALSSESIENLPSVFGSNPKAHIAAKTVFHLAHRHG
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KSD DILREGWKNIMEAMLQLFRAQLLPKAMIEVEDFVDPNGKISLQREETPSNRGESTVLSFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DILREGWKNIMEAMLQLFRAQLLPKAMIEVEDFVDPNGKISLQREETPSNRGESTVLSFV
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KSD SWLTLSGPEQSSVRGPSTENQEAKRVALECIKQCDPEKMITESKFLQLESLQELMKALVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SWLTLSGPEQSSVRGPSTENQEAKRVALECIKQCDPEKMITESKFLQLESLQELMKALVS
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KSD VTPDEETYDEEDAAFCLEMLLRIVLENRDRVGCVWQTVRDHLYHLCVQAQDFCFLVERAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VTPDEETYDEEDAAFCLEMLLRIVLENRDRVGCVWQTVRDHLYHLCVQAQDFCFLVERAV
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KSD VGLLRLAIRLLRREEISAQVLLSLRILLLMKPSVLSRVSHQVAYGLHELLKTNAANIHSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VGLLRLAIRLLRREEISAQVLLSLRILLLMKPSVLSRVSHQVAYGLHELLKTNAANIHSG
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KSD DDWATLFTLLECIGSGVKPPAALQATARADAPDAGAQSDSELPSYHQNDVSLDRGYTSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DDWATLFTLLECIGSGVKPPAALQATARADAPDAGAQSDSELPSYHQNDVSLDRGYTSDS
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KSD EVYTDHGRPGKIHRSATDADVVNSGWLVVGKDDVDNSKPGPSRPGPSPLINQYSLTVGLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EVYTDHGRPGKIHRSATDADVVNSGWLVVGKDDVDNSKPGPSRPGPSPLINQYSLTVGLD
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KSD LGPHDTKSLLKCVESLSFIVRDAAHITPDNFELCVKTLRIFVEASLNGGCKSQEKRGKSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LGPHDTKSLLKCVESLSFIVRDAAHITPDNFELCVKTLRIFVEASLNGGCKSQEKRGKSH
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KSD KYDSKGNRFKKKSKEGSMLRRPRTSSQHASRGGQSDDDEDEGVPASYHTVSLQVSQDLLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KYDSKGNRFKKKSKEGSMLRRPRTSSQHASRGGQSDDDEDEGVPASYHTVSLQVSQDLLD
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KSD LMHTLHTRAASIYSSWAEEQRHLETGGQKIEADSRTLWAHCWCPLLQGIACLCCDARRQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LMHTLHTRAASIYSSWAEEQRHLETGGQKIEADSRTLWAHCWCPLLQGIACLCCDARRQV
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KSD RMQALTYLQRALLVHDLQKLDALEWESCFNKVLFPLLTKLLENISPADVGGMEETRMRAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RMQALTYLQRALLVHDLQKLDALEWESCFNKVLFPLLTKLLENISPADVGGMEETRMRAS
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KSD TLLSKVFLQHLSPLLSLSTFAALWLTILDFMDKYMHAGSSDLLSEAIPESLKNMLLVMDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TLLSKVFLQHLSPLLSLSTFAALWLTILDFMDKYMHAGSSDLLSEAIPESLKNMLLVMDT
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KSD AEIFHSADARGGGPSALWEITWERIDCFLPHLRDELFKQTVIQDPMPMEPQGQKPLASAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AEIFHSADARGGGPSALWEITWERIDCFLPHLRDELFKQTVIQDPMPMEPQGQKPLASAH
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KSD LTSAAGDTRTPGHPPPPEIPSELGACDFEKPESPRAASSSSPGSPVASSPSRLSPTPDGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LTSAAGDTRTPGHPPPPEIPSELGACDFEKPESPRAASSSSPGSPVASSPSRLSPTPDGP
1750 1760 1770 1780 1790 1800
1810 1820 1830 1840 1850
pF1KSD PPLAQPPLILQPLASPLQVGVPPMTLPIILNPALIEATSPVPLLATPRPTDPIPTSEVN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PPLAQPPLILQPLASPLQVGVPPMTLPIILNPALIEATSPVPLLATPRPTDPIPTSEVN
1810 1820 1830 1840 1850
>>CCDS5346.1 CYTH3 gene_id:9265|Hs108|chr7 (399 aa)
initn: 373 init1: 344 opt: 508 Z-score: 309.7 bits: 68.4 E(32554): 6.3e-11
Smith-Waterman score: 508; 43.8% identity (71.6% similar) in 194 aa overlap (699-889:66-253)
670 680 690 700 710 720
pF1KSD DSGADKKFARKPPRFSCLLPDPRELIEIKNKKKLLITGTEQFNQKPKKGIQFLQEKGLL-
..: . : ..::. :::::::: :. ::
CCDS53 DDIERLKYEIAEVMTEIDNLTSVEESKTTQRNKQIAMGRKKFNMDPKKGIQFLIENDLLQ
40 50 60 70 80 90
730 740 750 760 770 780
pF1KSD TIPMDNTEVAQWLRENPRLDKKMIGEFVSDRK--NIDLLESFVSTFSFQGLRLDEALRLY
. : : :::.: .. :.: .::.....: :: .:..:: : : : .::: .
CCDS53 SSPED---VAQFLYKGEGLNKTVIGDYLGERDEFNIKVLQAFVELHEFADLNLVQALRQF
100 110 120 130 140 150
790 800 810 820 830 840
pF1KSD LEAFRLPGEAPVIQRLLEAFTERWMNCNGSPFANSDACFSLAYAVIMLNTDQHNHNVRKQ
: .::::::: :.:..:::. :. :: . : ..:.:. :..:.:::::. :::::: .
CCDS53 LWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVRDK
160 170 180 190 200 210
850 860 870 880 890 900
pF1KSD NAPMTLEEFRKNLKGVNGGKDFEQDILEDMYHAIKNEEIVMPEEQTGLVRENYVWNVLLH
: : :.: .:.: : :. ...:...:..:::: . .::.
CCDS53 --P-TAERFIAMNRGINEGGDLPEELLRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREG
220 230 240 250 260
910 920 930 940 950 960
pF1KSD RGATPEGIFLRVPTASYDLDLFTMTWGPTIAALSYVFDKSLEETIIQKAISGFRKCAMIS
CCDS53 WLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFEL
270 280 290 300 310 320
1859 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:54:18 2016 done: Thu Nov 3 00:54:19 2016
Total Scan time: 7.010 Total Display time: 0.160
Function used was FASTA [36.3.4 Apr, 2011]