FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0253, 709 aa
  1>>>pF1KSDA0253 709 - 709 aa - 709 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3468+/-0.000864; mu= 19.5246+/- 0.052
 mean_var=65.3160+/-13.201, 0's: 0 Z-trim(106.2): 18  B-trim: 53 in 1/49
 Lambda= 0.158695
 statistics sampled from 8847 (8856) to 8847 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.272), width:  16
 Scan time:  2.950

The best scores are:                                      opt bits E(32554)
CCDS1203.1 NCSTN gene_id:23385|Hs108|chr1          ( 709) 4700 1085.2       0
CCDS76228.1 NCSTN gene_id:23385|Hs108|chr1         ( 689) 4525 1045.1       0


>>CCDS1203.1 NCSTN gene_id:23385|Hs108|chr1               (709 aa)
 initn: 4700 init1: 4700 opt: 4700  Z-score: 5808.1  bits: 1085.2 E(32554):    0
Smith-Waterman score: 4700; 100.0% identity (100.0% similar) in 709 aa overlap (1-709:1-709)

               10        20        30        40        50        60
pF1KSD MATAGGGSGADPGSRGLLRLLSFCVLLAGLCRGNSVERKIYIPLNKTAPCVRLLNATHQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MATAGGGSGADPGSRGLLRLLSFCVLLAGLCRGNSVERKIYIPLNKTAPCVRLLNATHQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD GCQSSISGDTGVIHVVEKEEDLQWVLTDGPNPPYMVLLESKHFTRDLMEKLKGRTSRIAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GCQSSISGDTGVIHVVEKEEDLQWVLTDGPNPPYMVLLESKHFTRDLMEKLKGRTSRIAG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD LAVSLTKPSPASGFSPSVQCPNDGFGVYSNSYGPEFAHCREIQWNSLGNGLAYEDFSFPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LAVSLTKPSPASGFSPSVQCPNDGFGVYSNSYGPEFAHCREIQWNSLGNGLAYEDFSFPI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD FLLEDENETKVIKQCYQDHNLSQNGSAPTFPLCAMQLFSHMHAVISTATCMRRSSIQSTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FLLEDENETKVIKQCYQDHNLSQNGSAPTFPLCAMQLFSHMHAVISTATCMRRSSIQSTF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD SINPEIVCDPLSDYNVWSMLKPINTTGTLKPDDRVVVAATRLDSRSFFWNVAPGAESAVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SINPEIVCDPLSDYNVWSMLKPINTTGTLKPDDRVVVAATRLDSRSFFWNVAPGAESAVA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD SFVTQLAAAEALQKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMEKGKFPVQLENVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SFVTQLAAAEALQKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMEKGKFPVQLENVD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD SFVELGQVALRTSLELWMHTDPVSQKNESVRNQVEDLLATLEKSGAGVPAVILRRPNQSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SFVELGQVALRTSLELWMHTDPVSQKNESVRNQVEDLLATLEKSGAGVPAVILRRPNQSQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD PLPPSSLQRFLRARNISGVVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PLPPSSLQRFLRARNISGVVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD TDTAKALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFLIKANNSWFQSILRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TDTAKALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFLIKANNSWFQSILRQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD DLRSYLGDGPLQHYIAVSSPTNTTYVVQYALANLTGTVVNLTREQCQDPSKVPSENKDLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DLRSYLGDGPLQHYIAVSSPTNTTYVVQYALANLTGTVVNLTREQCQDPSKVPSENKDLY
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD EYSWVQGPLHSNETDRLPRCVRSTARLARALSPAFELSQWSSTEYSTWTESRWKDIRARI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EYSWVQGPLHSNETDRLPRCVRSTARLARALSPAFELSQWSSTEYSTWTESRWKDIRARI
              610       620       630       640       650       660

              670       680       690       700         
pF1KSD FLIASKELELITLTVGFGILIFSLIVTYCINAKADVLFIAPREPGAVSY
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FLIASKELELITLTVGFGILIFSLIVTYCINAKADVLFIAPREPGAVSY
              670       680       690       700         

>>CCDS76228.1 NCSTN gene_id:23385|Hs108|chr1              (689 aa)
 initn: 4525 init1: 4525 opt: 4525  Z-score: 5591.7  bits: 1045.1 E(32554):    0
Smith-Waterman score: 4525; 99.0% identity (99.7% similar) in 689 aa overlap (21-709:1-689)

               10        20        30        40        50        60
pF1KSD MATAGGGSGADPGSRGLLRLLSFCVLLAGLCRGNSVERKIYIPLNKTAPCVRLLNATHQI
                           ..: ..: .:::::::::::::::::::::::::::::::
CCDS76                     MDFNLILESLCRGNSVERKIYIPLNKTAPCVRLLNATHQI
                                   10        20        30        40

               70        80        90       100       110       120
pF1KSD GCQSSISGDTGVIHVVEKEEDLQWVLTDGPNPPYMVLLESKHFTRDLMEKLKGRTSRIAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GCQSSISGDTGVIHVVEKEEDLQWVLTDGPNPPYMVLLESKHFTRDLMEKLKGRTSRIAG
               50        60        70        80        90       100

              130       140       150       160       170       180
pF1KSD LAVSLTKPSPASGFSPSVQCPNDGFGVYSNSYGPEFAHCREIQWNSLGNGLAYEDFSFPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LAVSLTKPSPASGFSPSVQCPNDGFGVYSNSYGPEFAHCREIQWNSLGNGLAYEDFSFPI
              110       120       130       140       150       160

              190       200       210       220       230       240
pF1KSD FLLEDENETKVIKQCYQDHNLSQNGSAPTFPLCAMQLFSHMHAVISTATCMRRSSIQSTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FLLEDENETKVIKQCYQDHNLSQNGSAPTFPLCAMQLFSHMHAVISTATCMRRSSIQSTF
              170       180       190       200       210       220

              250       260       270       280       290       300
pF1KSD SINPEIVCDPLSDYNVWSMLKPINTTGTLKPDDRVVVAATRLDSRSFFWNVAPGAESAVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SINPEIVCDPLSDYNVWSMLKPINTTGTLKPDDRVVVAATRLDSRSFFWNVAPGAESAVA
              230       240       250       260       270       280

              310       320       330       340       350       360
pF1KSD SFVTQLAAAEALQKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMEKGKFPVQLENVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SFVTQLAAAEALQKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMEKGKFPVQLENVD
              290       300       310       320       330       340

              370       380       390       400       410       420
pF1KSD SFVELGQVALRTSLELWMHTDPVSQKNESVRNQVEDLLATLEKSGAGVPAVILRRPNQSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SFVELGQVALRTSLELWMHTDPVSQKNESVRNQVEDLLATLEKSGAGVPAVILRRPNQSQ
              350       360       370       380       390       400

              430       440       450       460       470       480
pF1KSD PLPPSSLQRFLRARNISGVVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PLPPSSLQRFLRARNISGVVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV
              410       420       430       440       450       460

              490       500       510       520       530       540
pF1KSD TDTAKALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFLIKANNSWFQSILRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 TDTAKALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFLIKANNSWFQSILRQ
              470       480       490       500       510       520

              550       560       570       580       590       600
pF1KSD DLRSYLGDGPLQHYIAVSSPTNTTYVVQYALANLTGTVVNLTREQCQDPSKVPSENKDLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DLRSYLGDGPLQHYIAVSSPTNTTYVVQYALANLTGTVVNLTREQCQDPSKVPSENKDLY
              530       540       550       560       570       580

              610       620       630       640       650       660
pF1KSD EYSWVQGPLHSNETDRLPRCVRSTARLARALSPAFELSQWSSTEYSTWTESRWKDIRARI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 EYSWVQGPLHSNETDRLPRCVRSTARLARALSPAFELSQWSSTEYSTWTESRWKDIRARI
              590       600       610       620       630       640

              670       680       690       700         
pF1KSD FLIASKELELITLTVGFGILIFSLIVTYCINAKADVLFIAPREPGAVSY
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FLIASKELELITLTVGFGILIFSLIVTYCINAKADVLFIAPREPGAVSY
              650       660       670       680         




709 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:57:16 2016 done: Thu Nov  3 00:57:17 2016
 Total Scan time:  2.950 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]