Result of FASTA (omim) for
pF1KSDA0253
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0253, 709 aa
1>>>pF1KSDA0253 709 - 709 aa - 709 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3076+/-0.000389; mu= 20.0031+/- 0.024
mean_var=72.7496+/-14.517, 0's: 0 Z-trim(113.0): 29 B-trim: 0 in 0/53
Lambda= 0.150369
statistics sampled from 22146 (22166) to 22146 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.26), width: 16
Scan time: 10.040
The best scores are: opt bits E(85289)
NP_056146 (OMIM: 142690,605254) nicastrin isoform ( 709) 4700 1029.4 0
NP_001277113 (OMIM: 142690,605254) nicastrin isofo ( 689) 4525 991.5 0
XP_011507665 (OMIM: 142690,605254) PREDICTED: nica ( 638) 3976 872.3 0
XP_005245110 (OMIM: 142690,605254) PREDICTED: nica ( 395) 2641 582.6 1e-165
NP_001277115 (OMIM: 142690,605254) nicastrin isofo ( 571) 2460 543.4 9e-154
>>NP_056146 (OMIM: 142690,605254) nicastrin isoform 1 pr (709 aa)
initn: 4700 init1: 4700 opt: 4700 Z-score: 5506.6 bits: 1029.4 E(85289): 0
Smith-Waterman score: 4700; 100.0% identity (100.0% similar) in 709 aa overlap (1-709:1-709)
10 20 30 40 50 60
pF1KSD MATAGGGSGADPGSRGLLRLLSFCVLLAGLCRGNSVERKIYIPLNKTAPCVRLLNATHQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MATAGGGSGADPGSRGLLRLLSFCVLLAGLCRGNSVERKIYIPLNKTAPCVRLLNATHQI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GCQSSISGDTGVIHVVEKEEDLQWVLTDGPNPPYMVLLESKHFTRDLMEKLKGRTSRIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GCQSSISGDTGVIHVVEKEEDLQWVLTDGPNPPYMVLLESKHFTRDLMEKLKGRTSRIAG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD LAVSLTKPSPASGFSPSVQCPNDGFGVYSNSYGPEFAHCREIQWNSLGNGLAYEDFSFPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LAVSLTKPSPASGFSPSVQCPNDGFGVYSNSYGPEFAHCREIQWNSLGNGLAYEDFSFPI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FLLEDENETKVIKQCYQDHNLSQNGSAPTFPLCAMQLFSHMHAVISTATCMRRSSIQSTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 FLLEDENETKVIKQCYQDHNLSQNGSAPTFPLCAMQLFSHMHAVISTATCMRRSSIQSTF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SINPEIVCDPLSDYNVWSMLKPINTTGTLKPDDRVVVAATRLDSRSFFWNVAPGAESAVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SINPEIVCDPLSDYNVWSMLKPINTTGTLKPDDRVVVAATRLDSRSFFWNVAPGAESAVA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD SFVTQLAAAEALQKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMEKGKFPVQLENVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SFVTQLAAAEALQKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMEKGKFPVQLENVD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SFVELGQVALRTSLELWMHTDPVSQKNESVRNQVEDLLATLEKSGAGVPAVILRRPNQSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SFVELGQVALRTSLELWMHTDPVSQKNESVRNQVEDLLATLEKSGAGVPAVILRRPNQSQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PLPPSSLQRFLRARNISGVVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 PLPPSSLQRFLRARNISGVVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD TDTAKALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFLIKANNSWFQSILRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TDTAKALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFLIKANNSWFQSILRQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD DLRSYLGDGPLQHYIAVSSPTNTTYVVQYALANLTGTVVNLTREQCQDPSKVPSENKDLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DLRSYLGDGPLQHYIAVSSPTNTTYVVQYALANLTGTVVNLTREQCQDPSKVPSENKDLY
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD EYSWVQGPLHSNETDRLPRCVRSTARLARALSPAFELSQWSSTEYSTWTESRWKDIRARI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EYSWVQGPLHSNETDRLPRCVRSTARLARALSPAFELSQWSSTEYSTWTESRWKDIRARI
610 620 630 640 650 660
670 680 690 700
pF1KSD FLIASKELELITLTVGFGILIFSLIVTYCINAKADVLFIAPREPGAVSY
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 FLIASKELELITLTVGFGILIFSLIVTYCINAKADVLFIAPREPGAVSY
670 680 690 700
>>NP_001277113 (OMIM: 142690,605254) nicastrin isoform 2 (689 aa)
initn: 4525 init1: 4525 opt: 4525 Z-score: 5301.6 bits: 991.5 E(85289): 0
Smith-Waterman score: 4525; 99.0% identity (99.7% similar) in 689 aa overlap (21-709:1-689)
10 20 30 40 50 60
pF1KSD MATAGGGSGADPGSRGLLRLLSFCVLLAGLCRGNSVERKIYIPLNKTAPCVRLLNATHQI
..: ..: .:::::::::::::::::::::::::::::::
NP_001 MDFNLILESLCRGNSVERKIYIPLNKTAPCVRLLNATHQI
10 20 30 40
70 80 90 100 110 120
pF1KSD GCQSSISGDTGVIHVVEKEEDLQWVLTDGPNPPYMVLLESKHFTRDLMEKLKGRTSRIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCQSSISGDTGVIHVVEKEEDLQWVLTDGPNPPYMVLLESKHFTRDLMEKLKGRTSRIAG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KSD LAVSLTKPSPASGFSPSVQCPNDGFGVYSNSYGPEFAHCREIQWNSLGNGLAYEDFSFPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAVSLTKPSPASGFSPSVQCPNDGFGVYSNSYGPEFAHCREIQWNSLGNGLAYEDFSFPI
110 120 130 140 150 160
190 200 210 220 230 240
pF1KSD FLLEDENETKVIKQCYQDHNLSQNGSAPTFPLCAMQLFSHMHAVISTATCMRRSSIQSTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLLEDENETKVIKQCYQDHNLSQNGSAPTFPLCAMQLFSHMHAVISTATCMRRSSIQSTF
170 180 190 200 210 220
250 260 270 280 290 300
pF1KSD SINPEIVCDPLSDYNVWSMLKPINTTGTLKPDDRVVVAATRLDSRSFFWNVAPGAESAVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SINPEIVCDPLSDYNVWSMLKPINTTGTLKPDDRVVVAATRLDSRSFFWNVAPGAESAVA
230 240 250 260 270 280
310 320 330 340 350 360
pF1KSD SFVTQLAAAEALQKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMEKGKFPVQLENVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFVTQLAAAEALQKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMEKGKFPVQLENVD
290 300 310 320 330 340
370 380 390 400 410 420
pF1KSD SFVELGQVALRTSLELWMHTDPVSQKNESVRNQVEDLLATLEKSGAGVPAVILRRPNQSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFVELGQVALRTSLELWMHTDPVSQKNESVRNQVEDLLATLEKSGAGVPAVILRRPNQSQ
350 360 370 380 390 400
430 440 450 460 470 480
pF1KSD PLPPSSLQRFLRARNISGVVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLPPSSLQRFLRARNISGVVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV
410 420 430 440 450 460
490 500 510 520 530 540
pF1KSD TDTAKALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFLIKANNSWFQSILRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDTAKALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFLIKANNSWFQSILRQ
470 480 490 500 510 520
550 560 570 580 590 600
pF1KSD DLRSYLGDGPLQHYIAVSSPTNTTYVVQYALANLTGTVVNLTREQCQDPSKVPSENKDLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLRSYLGDGPLQHYIAVSSPTNTTYVVQYALANLTGTVVNLTREQCQDPSKVPSENKDLY
530 540 550 560 570 580
610 620 630 640 650 660
pF1KSD EYSWVQGPLHSNETDRLPRCVRSTARLARALSPAFELSQWSSTEYSTWTESRWKDIRARI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EYSWVQGPLHSNETDRLPRCVRSTARLARALSPAFELSQWSSTEYSTWTESRWKDIRARI
590 600 610 620 630 640
670 680 690 700
pF1KSD FLIASKELELITLTVGFGILIFSLIVTYCINAKADVLFIAPREPGAVSY
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLIASKELELITLTVGFGILIFSLIVTYCINAKADVLFIAPREPGAVSY
650 660 670 680
>>XP_011507665 (OMIM: 142690,605254) PREDICTED: nicastri (638 aa)
initn: 3976 init1: 3976 opt: 3976 Z-score: 4658.4 bits: 872.3 E(85289): 0
Smith-Waterman score: 4070; 90.0% identity (90.0% similar) in 709 aa overlap (1-709:1-638)
10 20 30 40 50 60
pF1KSD MATAGGGSGADPGSRGLLRLLSFCVLLAGLCRGNSVERKIYIPLNKTAPCVRLLNATHQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MATAGGGSGADPGSRGLLRLLSFCVLLAGLCRGNSVERKIYIPLNKTAPCVRLLNATHQI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GCQSSISGDTGVIHVVEKEEDLQWVLTDGPNPPYMVLLESKHFTRDLMEKLKGRTSRIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GCQSSISGDTGVIHVVEKEEDLQWVLTDGPNPPYMVLLESKHFTRDLMEKLKGRTSRIAG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD LAVSLTKPSPASGFSPSVQCPNDGFGVYSNSYGPEFAHCREIQWNSLGNGLAYEDFSFPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LAVSLTKPSPASGFSPSVQCPNDGFGVYSNSYGPEFAHCREIQWNSLGNGLAYEDFSFPI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FLLEDENETKVIKQCYQDHNLSQNGSAPTFPLCAMQLFSHMHAVISTATCMRRSSIQSTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FLLEDENETKVIKQCYQDHNLSQNGSAPTFPLCAMQLFSHMHAVISTATCMRRSSIQSTF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SINPEIVCDPLSDYNVWSMLKPINTTGTLKPDDRVVVAATRLDSRSFFWNVAPGAESAVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SINPEIVCDPLSDYNVWSMLKPINTTGTLKPDDRVVVAATRLDSRSFFWNVAPGAESAVA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD SFVTQLAAAEALQKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMEKGKFPVQLENVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFVTQLAAAEALQKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMEKGKFPVQLENVD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SFVELGQVALRTSLELWMHTDPVSQKNESVRNQVEDLLATLEKSGAGVPAVILRRPNQSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFVELGQVALRTSLELWMHTDPVSQKNESVRNQVEDLLATLEKSGAGVPAVILRRPNQSQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PLPPSSLQRFLRARNISGVVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PLPPSSLQRFLRARNISGVVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD TDTAKALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFLIKANNSWFQSILRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TDTAKALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFLIKANNSWFQSILRQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD DLRSYLGDGPLQHYIAVSSPTNTTYVVQYALANLTGTVVNLTREQCQDPSKVPSENKDLY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DLRSYLGDGPLQHYIAVSSPTNTTYVVQYALANLTGTVVNLTREQCQDPSKVPSENKDL-
550 560 570 580 590
610 620 630 640 650 660
pF1KSD EYSWVQGPLHSNETDRLPRCVRSTARLARALSPAFELSQWSSTEYSTWTESRWKDIRARI
XP_011 ------------------------------------------------------------
670 680 690 700
pF1KSD FLIASKELELITLTVGFGILIFSLIVTYCINAKADVLFIAPREPGAVSY
:::::::::::::::::::::::::::::::::::::::
XP_011 ----------ITLTVGFGILIFSLIVTYCINAKADVLFIAPREPGAVSY
600 610 620 630
>>XP_005245110 (OMIM: 142690,605254) PREDICTED: nicastri (395 aa)
initn: 2641 init1: 2641 opt: 2641 Z-score: 3096.2 bits: 582.6 E(85289): 1e-165
Smith-Waterman score: 2641; 100.0% identity (100.0% similar) in 393 aa overlap (1-393:1-393)
10 20 30 40 50 60
pF1KSD MATAGGGSGADPGSRGLLRLLSFCVLLAGLCRGNSVERKIYIPLNKTAPCVRLLNATHQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MATAGGGSGADPGSRGLLRLLSFCVLLAGLCRGNSVERKIYIPLNKTAPCVRLLNATHQI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GCQSSISGDTGVIHVVEKEEDLQWVLTDGPNPPYMVLLESKHFTRDLMEKLKGRTSRIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GCQSSISGDTGVIHVVEKEEDLQWVLTDGPNPPYMVLLESKHFTRDLMEKLKGRTSRIAG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD LAVSLTKPSPASGFSPSVQCPNDGFGVYSNSYGPEFAHCREIQWNSLGNGLAYEDFSFPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LAVSLTKPSPASGFSPSVQCPNDGFGVYSNSYGPEFAHCREIQWNSLGNGLAYEDFSFPI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FLLEDENETKVIKQCYQDHNLSQNGSAPTFPLCAMQLFSHMHAVISTATCMRRSSIQSTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FLLEDENETKVIKQCYQDHNLSQNGSAPTFPLCAMQLFSHMHAVISTATCMRRSSIQSTF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD SINPEIVCDPLSDYNVWSMLKPINTTGTLKPDDRVVVAATRLDSRSFFWNVAPGAESAVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SINPEIVCDPLSDYNVWSMLKPINTTGTLKPDDRVVVAATRLDSRSFFWNVAPGAESAVA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD SFVTQLAAAEALQKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMEKGKFPVQLENVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SFVTQLAAAEALQKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMEKGKFPVQLENVD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD SFVELGQVALRTSLELWMHTDPVSQKNESVRNQVEDLLATLEKSGAGVPAVILRRPNQSQ
:::::::::::::::::::::::::::::::::
XP_005 SFVELGQVALRTSLELWMHTDPVSQKNESVRNQGL
370 380 390
430 440 450 460 470 480
pF1KSD PLPPSSLQRFLRARNISGVVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV
>>NP_001277115 (OMIM: 142690,605254) nicastrin isoform 3 (571 aa)
initn: 3762 init1: 2460 opt: 2460 Z-score: 2881.7 bits: 543.4 E(85289): 9e-154
Smith-Waterman score: 3490; 80.5% identity (80.5% similar) in 709 aa overlap (1-709:1-571)
10 20 30 40 50 60
pF1KSD MATAGGGSGADPGSRGLLRLLSFCVLLAGLCRGNSVERKIYIPLNKTAPCVRLLNATHQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATAGGGSGADPGSRGLLRLLSFCVLLAGLCRGNSVERKIYIPLNKTAPCVRLLNATHQI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD GCQSSISGDTGVIHVVEKEEDLQWVLTDGPNPPYMVLLESKHFTRDLMEKLKGRTSRIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCQSSISGDTGVIHVVEKEEDLQWVLTDGPNPPYMVLLESKHFTRDLMEKLKGRTSRIAG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD LAVSLTKPSPASGFSPSVQCPNDGFGVYSNSYGPEFAHCREIQWNSLGNGLAYEDFSFPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAVSLTKPSPASGFSPSVQCPNDGFGVYSNSYGPEFAHCREIQWNSLGNGLAYEDFSFPI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FLLEDENETKVIKQCYQDHNLSQNGSAPTFPLCAMQLFSHMHAVISTATCMRRSSIQSTF
::::::::::::::
NP_001 FLLEDENETKVIKQ----------------------------------------------
190
250 260 270 280 290 300
pF1KSD SINPEIVCDPLSDYNVWSMLKPINTTGTLKPDDRVVVAATRLDSRSFFWNVAPGAESAVA
NP_001 ------------------------------------------------------------
310 320 330 340 350 360
pF1KSD SFVTQLAAAEALQKAPDVTTLPRNVMFVFFQGETFDYIGSSRMVYDMEKGKFPVQLENVD
::::::::::::::::::::::::::::
NP_001 --------------------------------ETFDYIGSSRMVYDMEKGKFPVQLENVD
200 210 220
370 380 390 400 410 420
pF1KSD SFVELGQVALRTSLELWMHTDPVSQKNESVRNQVEDLLATLEKSGAGVPAVILRRPNQSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFVELGQVALRTSLELWMHTDPVSQKNESVRNQVEDLLATLEKSGAGVPAVILRRPNQSQ
230 240 250 260 270 280
430 440 450 460 470 480
pF1KSD PLPPSSLQRFLRARNISGVVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLPPSSLQRFLRARNISGVVLADHSGAFHNKYYQSIYDTAENINVSYPEWLSPEEDLNFV
290 300 310 320 330 340
490 500 510 520 530 540
pF1KSD TDTAKALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFLIKANNSWFQSILRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDTAKALADVATVLGRALYELAGGTNFSDTVQADPQTVTRLLYGFLIKANNSWFQSILRQ
350 360 370 380 390 400
550 560 570 580 590 600
pF1KSD DLRSYLGDGPLQHYIAVSSPTNTTYVVQYALANLTGTVVNLTREQCQDPSKVPSENKDLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLRSYLGDGPLQHYIAVSSPTNTTYVVQYALANLTGTVVNLTREQCQDPSKVPSENKDLY
410 420 430 440 450 460
610 620 630 640 650 660
pF1KSD EYSWVQGPLHSNETDRLPRCVRSTARLARALSPAFELSQWSSTEYSTWTESRWKDIRARI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EYSWVQGPLHSNETDRLPRCVRSTARLARALSPAFELSQWSSTEYSTWTESRWKDIRARI
470 480 490 500 510 520
670 680 690 700
pF1KSD FLIASKELELITLTVGFGILIFSLIVTYCINAKADVLFIAPREPGAVSY
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLIASKELELITLTVGFGILIFSLIVTYCINAKADVLFIAPREPGAVSY
530 540 550 560 570
709 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:57:17 2016 done: Thu Nov 3 00:57:18 2016
Total Scan time: 10.040 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]