FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0258, 391 aa
  1>>>pF1KSDA0258 391 - 391 aa - 391 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2310+/-0.000692; mu= 13.1336+/- 0.042
 mean_var=88.2670+/-17.337, 0's: 0 Z-trim(112.0): 11  B-trim: 0 in 0/53
 Lambda= 0.136513
 statistics sampled from 12862 (12868) to 12862 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.395), width:  16
 Scan time:  2.720

The best scores are:                                      opt bits E(32554)
CCDS47964.2 RGP1 gene_id:9827|Hs108|chr9           ( 391) 2628 527.1 1.1e-149


>>CCDS47964.2 RGP1 gene_id:9827|Hs108|chr9                (391 aa)
 initn: 2628 init1: 2628 opt: 2628  Z-score: 2800.9  bits: 527.1 E(32554): 1.1e-149
Smith-Waterman score: 2628; 100.0% identity (100.0% similar) in 391 aa overlap (1-391:1-391)

               10        20        30        40        50        60
pF1KSD MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD IEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPLRVLVLTGLQDVRFPQDEAVAPSSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 IEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPLRVLVLTGLQDVRFPQDEAVAPSSP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD FLEEDEGGKKDSWLAELAGERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FLEEDEGGKKDSWLAELAGERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD GTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGAGGVPSVSHVTHARHQESCLHTTRTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGAGGVPSVSHVTHARHQESCLHTTRTS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD FSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVEQPEPTTWTGPEQVPVDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVEQPEPTTWTGPEQVPVDT
              310       320       330       340       350       360

              370       380       390 
pF1KSD FSWDLPIKVLPTSPTLASYAAPGPSTSTITI
       :::::::::::::::::::::::::::::::
CCDS47 FSWDLPIKVLPTSPTLASYAAPGPSTSTITI
              370       380       390 




391 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:57:47 2016 done: Thu Nov  3 00:57:48 2016
 Total Scan time:  2.720 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]