FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0258, 391 aa
  1>>>pF1KSDA0258 391 - 391 aa - 391 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1174+/-0.000293; mu= 14.0170+/- 0.019
 mean_var=90.2267+/-18.188, 0's: 0 Z-trim(119.4): 7  B-trim: 0 in 0/61
 Lambda= 0.135023
 statistics sampled from 33476 (33481) to 33476 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.393), width:  16
 Scan time:  9.020

The best scores are:                                      opt bits E(85289)
NP_001073965 (OMIM: 615742) RAB6A-GEF complex part ( 391) 2628 521.5 1.4e-147


>>NP_001073965 (OMIM: 615742) RAB6A-GEF complex partner   (391 aa)
 initn: 2628 init1: 2628 opt: 2628  Z-score: 2770.8  bits: 521.5 E(85289): 1.4e-147
Smith-Waterman score: 2628; 100.0% identity (100.0% similar) in 391 aa overlap (1-391:1-391)

               10        20        30        40        50        60
pF1KSD MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD ALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD IEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPLRVLVLTGLQDVRFPQDEAVAPSSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPLRVLVLTGLQDVRFPQDEAVAPSSP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD FLEEDEGGKKDSWLAELAGERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLEEDEGGKKDSWLAELAGERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD GTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGAGGVPSVSHVTHARHQESCLHTTRTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGAGGVPSVSHVTHARHQESCLHTTRTS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD FSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVEQPEPTTWTGPEQVPVDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVEQPEPTTWTGPEQVPVDT
              310       320       330       340       350       360

              370       380       390 
pF1KSD FSWDLPIKVLPTSPTLASYAAPGPSTSTITI
       :::::::::::::::::::::::::::::::
NP_001 FSWDLPIKVLPTSPTLASYAAPGPSTSTITI
              370       380       390 




391 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:57:48 2016 done: Thu Nov  3 00:57:49 2016
 Total Scan time:  9.020 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]