Result of FASTA (ccds) for
pF1KSDA0262
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0262, 811 aa
1>>>pF1KSDA0262 811 - 811 aa - 811 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7028+/-0.000947; mu= 12.0650+/- 0.057
mean_var=179.8626+/-36.956, 0's: 0 Z-trim(111.9): 32 B-trim: 748 in 1/50
Lambda= 0.095632
statistics sampled from 12735 (12759) to 12735 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.392), width: 16
Scan time: 4.780
The best scores are: opt bits E(32554)
CCDS9201.1 RNF10 gene_id:9921|Hs108|chr12 ( 811) 5433 762.3 0
CCDS81746.1 RNF10 gene_id:9921|Hs108|chr12 ( 816) 5413 759.6 4.8e-219
>>CCDS9201.1 RNF10 gene_id:9921|Hs108|chr12 (811 aa)
initn: 5433 init1: 5433 opt: 5433 Z-score: 4060.9 bits: 762.3 E(32554): 0
Smith-Waterman score: 5433; 100.0% identity (100.0% similar) in 811 aa overlap (1-811:1-811)
10 20 30 40 50 60
pF1KSD MPLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MPLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD KRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 KRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EAQRAEFSPAQFSGPKKINLNHLLNFTFEPRGQTGHFEGSGHGSWGKRNKWGHKPFNKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 EAQRAEFSPAQFSGPKKINLNHLLNFTFEPRGQTGHFEGSGHGSWGKRNKWGHKPFNKEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FLQANCQFVVSEDQDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 FLQANCQFVVSEDQDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 GHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKRE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD KGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVVLEEKVALEQQLAEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 KGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVVLEEKVALEQQLAEEK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD HTPESCFIEAAIQELKTREEALSGLAGSRREVTGVVAALEQLVLMAPLAKESVFQPRKGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 HTPESCFIEAAIQELKTREEALSGLAGSRREVTGVVAALEQLVLMAPLAKESVFQPRKGV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LEYLSAFDEETTEVCSLDTPSRPLALPLVEEEEAVSEPEPEGLPEACDDLELADDNLKEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 LEYLSAFDEETTEVCSLDTPSRPLALPLVEEEEAVSEPEPEGLPEACDDLELADDNLKEG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD TICTESSQQEPITKSGFTRLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLERSPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 TICTESSQQEPITKSGFTRLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLERSPEK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD ISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSDDIEKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 ISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSDDIEKR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD KRQRQKKAREERRRERRIEIEENKKQGKYPEVHIPLENLQQFPAFNSYTCSSDSALGPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 KRQRQKKAREERRRERRIEIEENKKQGKYPEVHIPLENLQQFPAFNSYTCSSDSALGPTS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD TEGHGALSISPLSRSPGSHADFLLTPLSPTASQGSPSFCVGSLEEDSPFPSFAQMLRVGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 TEGHGALSISPLSRSPGSHADFLLTPLSPTASQGSPSFCVGSLEEDSPFPSFAQMLRVGK
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD AKADVWPKTAPKKDENSLVPPAPVDSDGESDNSDRVPVPSFQNSFSQAIEAAFMKLDTPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 AKADVWPKTAPKKDENSLVPPAPVDSDGESDNSDRVPVPSFQNSFSQAIEAAFMKLDTPA
730 740 750 760 770 780
790 800 810
pF1KSD TSDPLSEEKGGKKRKKQKQKLLFSTSVVHTK
:::::::::::::::::::::::::::::::
CCDS92 TSDPLSEEKGGKKRKKQKQKLLFSTSVVHTK
790 800 810
>>CCDS81746.1 RNF10 gene_id:9921|Hs108|chr12 (816 aa)
initn: 2827 init1: 2827 opt: 5413 Z-score: 4046.0 bits: 759.6 E(32554): 4.8e-219
Smith-Waterman score: 5413; 99.4% identity (99.4% similar) in 816 aa overlap (1-811:1-816)
10 20 30 40 50 60
pF1KSD MPLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MPLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD KRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EAQRAEFSPAQFSGPKKINLNHLLNFTFEPRGQTGHFEGSGHGSWGKRNKWGHKPFNKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EAQRAEFSPAQFSGPKKINLNHLLNFTFEPRGQTGHFEGSGHGSWGKRNKWGHKPFNKEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FLQANCQFVVSEDQDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FLQANCQFVVSEDQDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKRE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD KGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVVLEEKVALEQQLAEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVVLEEKVALEQQLAEEK
310 320 330 340 350 360
370 380 390 400 410
pF1KSD HTPESCFIEAAIQELKTREEALSGLAGSRREVTGVVAALEQLVLMAPLAKESVFQPRK--
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 HTPESCFIEAAIQELKTREEALSGLAGSRREVTGVVAALEQLVLMAPLAKESVFQPRKSL
370 380 390 400 410 420
420 430 440 450 460 470
pF1KSD ---GVLEYLSAFDEETTEVCSLDTPSRPLALPLVEEEEAVSEPEPEGLPEACDDLELADD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LQQGVLEYLSAFDEETTEVCSLDTPSRPLALPLVEEEEAVSEPEPEGLPEACDDLELADD
430 440 450 460 470 480
480 490 500 510 520 530
pF1KSD NLKEGTICTESSQQEPITKSGFTRLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 NLKEGTICTESSQQEPITKSGFTRLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLE
490 500 510 520 530 540
540 550 560 570 580 590
pF1KSD RSPEKISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RSPEKISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSD
550 560 570 580 590 600
600 610 620 630 640 650
pF1KSD DIEKRKRQRQKKAREERRRERRIEIEENKKQGKYPEVHIPLENLQQFPAFNSYTCSSDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DIEKRKRQRQKKAREERRRERRIEIEENKKQGKYPEVHIPLENLQQFPAFNSYTCSSDSA
610 620 630 640 650 660
660 670 680 690 700 710
pF1KSD LGPTSTEGHGALSISPLSRSPGSHADFLLTPLSPTASQGSPSFCVGSLEEDSPFPSFAQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LGPTSTEGHGALSISPLSRSPGSHADFLLTPLSPTASQGSPSFCVGSLEEDSPFPSFAQM
670 680 690 700 710 720
720 730 740 750 760 770
pF1KSD LRVGKAKADVWPKTAPKKDENSLVPPAPVDSDGESDNSDRVPVPSFQNSFSQAIEAAFMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LRVGKAKADVWPKTAPKKDENSLVPPAPVDSDGESDNSDRVPVPSFQNSFSQAIEAAFMK
730 740 750 760 770 780
780 790 800 810
pF1KSD LDTPATSDPLSEEKGGKKRKKQKQKLLFSTSVVHTK
::::::::::::::::::::::::::::::::::::
CCDS81 LDTPATSDPLSEEKGGKKRKKQKQKLLFSTSVVHTK
790 800 810
811 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:58:22 2016 done: Thu Nov 3 00:58:23 2016
Total Scan time: 4.780 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]