Result of FASTA (omim) for
pF1KSDA0262
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0262, 811 aa
1>>>pF1KSDA0262 811 - 811 aa - 811 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3380+/-0.000363; mu= 14.4941+/- 0.023
mean_var=195.0678+/-40.195, 0's: 0 Z-trim(119.7): 39 B-trim: 72 in 1/54
Lambda= 0.091829
statistics sampled from 33947 (33996) to 33947 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.399), width: 16
Scan time: 10.950
The best scores are: opt bits E(85289)
NP_055683 (OMIM: 615998) RING finger protein 10 is ( 811) 5433 732.8 1.4e-210
NP_001317403 (OMIM: 615998) RING finger protein 10 ( 816) 5413 730.2 8.8e-210
XP_016875771 (OMIM: 615998) PREDICTED: RING finger ( 761) 5101 688.8 2.3e-197
XP_005254070 (OMIM: 615998) PREDICTED: RING finger ( 766) 5081 686.2 1.5e-196
XP_016875772 (OMIM: 615998) PREDICTED: RING finger ( 734) 4548 615.5 2.6e-175
>>NP_055683 (OMIM: 615998) RING finger protein 10 isofor (811 aa)
initn: 5433 init1: 5433 opt: 5433 Z-score: 3901.6 bits: 732.8 E(85289): 1.4e-210
Smith-Waterman score: 5433; 100.0% identity (100.0% similar) in 811 aa overlap (1-811:1-811)
10 20 30 40 50 60
pF1KSD MPLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MPLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD KRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EAQRAEFSPAQFSGPKKINLNHLLNFTFEPRGQTGHFEGSGHGSWGKRNKWGHKPFNKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EAQRAEFSPAQFSGPKKINLNHLLNFTFEPRGQTGHFEGSGHGSWGKRNKWGHKPFNKEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FLQANCQFVVSEDQDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 FLQANCQFVVSEDQDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKRE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD KGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVVLEEKVALEQQLAEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVVLEEKVALEQQLAEEK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD HTPESCFIEAAIQELKTREEALSGLAGSRREVTGVVAALEQLVLMAPLAKESVFQPRKGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 HTPESCFIEAAIQELKTREEALSGLAGSRREVTGVVAALEQLVLMAPLAKESVFQPRKGV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD LEYLSAFDEETTEVCSLDTPSRPLALPLVEEEEAVSEPEPEGLPEACDDLELADDNLKEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LEYLSAFDEETTEVCSLDTPSRPLALPLVEEEEAVSEPEPEGLPEACDDLELADDNLKEG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD TICTESSQQEPITKSGFTRLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLERSPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TICTESSQQEPITKSGFTRLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLERSPEK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD ISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSDDIEKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSDDIEKR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD KRQRQKKAREERRRERRIEIEENKKQGKYPEVHIPLENLQQFPAFNSYTCSSDSALGPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KRQRQKKAREERRRERRIEIEENKKQGKYPEVHIPLENLQQFPAFNSYTCSSDSALGPTS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KSD TEGHGALSISPLSRSPGSHADFLLTPLSPTASQGSPSFCVGSLEEDSPFPSFAQMLRVGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TEGHGALSISPLSRSPGSHADFLLTPLSPTASQGSPSFCVGSLEEDSPFPSFAQMLRVGK
670 680 690 700 710 720
730 740 750 760 770 780
pF1KSD AKADVWPKTAPKKDENSLVPPAPVDSDGESDNSDRVPVPSFQNSFSQAIEAAFMKLDTPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AKADVWPKTAPKKDENSLVPPAPVDSDGESDNSDRVPVPSFQNSFSQAIEAAFMKLDTPA
730 740 750 760 770 780
790 800 810
pF1KSD TSDPLSEEKGGKKRKKQKQKLLFSTSVVHTK
:::::::::::::::::::::::::::::::
NP_055 TSDPLSEEKGGKKRKKQKQKLLFSTSVVHTK
790 800 810
>>NP_001317403 (OMIM: 615998) RING finger protein 10 iso (816 aa)
initn: 2827 init1: 2827 opt: 5413 Z-score: 3887.2 bits: 730.2 E(85289): 8.8e-210
Smith-Waterman score: 5413; 99.4% identity (99.4% similar) in 816 aa overlap (1-811:1-816)
10 20 30 40 50 60
pF1KSD MPLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD KRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EAQRAEFSPAQFSGPKKINLNHLLNFTFEPRGQTGHFEGSGHGSWGKRNKWGHKPFNKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAQRAEFSPAQFSGPKKINLNHLLNFTFEPRGQTGHFEGSGHGSWGKRNKWGHKPFNKEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FLQANCQFVVSEDQDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLQANCQFVVSEDQDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKRE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD KGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVVLEEKVALEQQLAEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVVLEEKVALEQQLAEEK
310 320 330 340 350 360
370 380 390 400 410
pF1KSD HTPESCFIEAAIQELKTREEALSGLAGSRREVTGVVAALEQLVLMAPLAKESVFQPRK--
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HTPESCFIEAAIQELKTREEALSGLAGSRREVTGVVAALEQLVLMAPLAKESVFQPRKSL
370 380 390 400 410 420
420 430 440 450 460 470
pF1KSD ---GVLEYLSAFDEETTEVCSLDTPSRPLALPLVEEEEAVSEPEPEGLPEACDDLELADD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQQGVLEYLSAFDEETTEVCSLDTPSRPLALPLVEEEEAVSEPEPEGLPEACDDLELADD
430 440 450 460 470 480
480 490 500 510 520 530
pF1KSD NLKEGTICTESSQQEPITKSGFTRLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLKEGTICTESSQQEPITKSGFTRLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLE
490 500 510 520 530 540
540 550 560 570 580 590
pF1KSD RSPEKISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSPEKISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSD
550 560 570 580 590 600
600 610 620 630 640 650
pF1KSD DIEKRKRQRQKKAREERRRERRIEIEENKKQGKYPEVHIPLENLQQFPAFNSYTCSSDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIEKRKRQRQKKAREERRRERRIEIEENKKQGKYPEVHIPLENLQQFPAFNSYTCSSDSA
610 620 630 640 650 660
660 670 680 690 700 710
pF1KSD LGPTSTEGHGALSISPLSRSPGSHADFLLTPLSPTASQGSPSFCVGSLEEDSPFPSFAQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGPTSTEGHGALSISPLSRSPGSHADFLLTPLSPTASQGSPSFCVGSLEEDSPFPSFAQM
670 680 690 700 710 720
720 730 740 750 760 770
pF1KSD LRVGKAKADVWPKTAPKKDENSLVPPAPVDSDGESDNSDRVPVPSFQNSFSQAIEAAFMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRVGKAKADVWPKTAPKKDENSLVPPAPVDSDGESDNSDRVPVPSFQNSFSQAIEAAFMK
730 740 750 760 770 780
780 790 800 810
pF1KSD LDTPATSDPLSEEKGGKKRKKQKQKLLFSTSVVHTK
::::::::::::::::::::::::::::::::::::
NP_001 LDTPATSDPLSEEKGGKKRKKQKQKLLFSTSVVHTK
790 800 810
>>XP_016875771 (OMIM: 615998) PREDICTED: RING finger pro (761 aa)
initn: 5101 init1: 5101 opt: 5101 Z-score: 3664.2 bits: 688.8 E(85289): 2.3e-197
Smith-Waterman score: 5101; 100.0% identity (100.0% similar) in 759 aa overlap (53-811:3-761)
30 40 50 60 70 80
pF1KSD SSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRYNRKRELSYPKNESFNNQSR
::::::::::::::::::::::::::::::
XP_016 MMDGKNSSGSKRYNRKRELSYPKNESFNNQSR
10 20 30
90 100 110 120 130 140
pF1KSD RSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVAEAQRAEFSPAQFSGPKKINLNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVAEAQRAEFSPAQFSGPKKINLNH
40 50 60 70 80 90
150 160 170 180 190 200
pF1KSD LLNFTFEPRGQTGHFEGSGHGSWGKRNKWGHKPFNKELFLQANCQFVVSEDQDYTAHFAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLNFTFEPRGQTGHFEGSGHGSWGKRNKWGHKPFNKELFLQANCQFVVSEDQDYTAHFAD
100 110 120 130 140 150
210 220 230 240 250 260
pF1KSD PDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSK
160 170 180 190 200 210
270 280 290 300 310 320
pF1KSD CPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKREKGVLVALPKSKWMNVDHPIHLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKREKGVLVALPKSKWMNVDHPIHLG
220 230 240 250 260 270
330 340 350 360 370 380
pF1KSD DEQHSQYSKLLLASKEQVLHRVVLEEKVALEQQLAEEKHTPESCFIEAAIQELKTREEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DEQHSQYSKLLLASKEQVLHRVVLEEKVALEQQLAEEKHTPESCFIEAAIQELKTREEAL
280 290 300 310 320 330
390 400 410 420 430 440
pF1KSD SGLAGSRREVTGVVAALEQLVLMAPLAKESVFQPRKGVLEYLSAFDEETTEVCSLDTPSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGLAGSRREVTGVVAALEQLVLMAPLAKESVFQPRKGVLEYLSAFDEETTEVCSLDTPSR
340 350 360 370 380 390
450 460 470 480 490 500
pF1KSD PLALPLVEEEEAVSEPEPEGLPEACDDLELADDNLKEGTICTESSQQEPITKSGFTRLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLALPLVEEEEAVSEPEPEGLPEACDDLELADDNLKEGTICTESSQQEPITKSGFTRLSS
400 410 420 430 440 450
510 520 530 540 550 560
pF1KSD SPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLERSPEKISATVVEIAGYSMSEDVRQRHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLERSPEKISATVVEIAGYSMSEDVRQRHR
460 470 480 490 500 510
570 580 590 600 610 620
pF1KSD YLSHLPLTCEFSICELALQPPVVSKETLEMFSDDIEKRKRQRQKKAREERRRERRIEIEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLSHLPLTCEFSICELALQPPVVSKETLEMFSDDIEKRKRQRQKKAREERRRERRIEIEE
520 530 540 550 560 570
630 640 650 660 670 680
pF1KSD NKKQGKYPEVHIPLENLQQFPAFNSYTCSSDSALGPTSTEGHGALSISPLSRSPGSHADF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKKQGKYPEVHIPLENLQQFPAFNSYTCSSDSALGPTSTEGHGALSISPLSRSPGSHADF
580 590 600 610 620 630
690 700 710 720 730 740
pF1KSD LLTPLSPTASQGSPSFCVGSLEEDSPFPSFAQMLRVGKAKADVWPKTAPKKDENSLVPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLTPLSPTASQGSPSFCVGSLEEDSPFPSFAQMLRVGKAKADVWPKTAPKKDENSLVPPA
640 650 660 670 680 690
750 760 770 780 790 800
pF1KSD PVDSDGESDNSDRVPVPSFQNSFSQAIEAAFMKLDTPATSDPLSEEKGGKKRKKQKQKLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVDSDGESDNSDRVPVPSFQNSFSQAIEAAFMKLDTPATSDPLSEEKGGKKRKKQKQKLL
700 710 720 730 740 750
810
pF1KSD FSTSVVHTK
:::::::::
XP_016 FSTSVVHTK
760
>>XP_005254070 (OMIM: 615998) PREDICTED: RING finger pro (766 aa)
initn: 2617 init1: 2617 opt: 5081 Z-score: 3649.8 bits: 686.2 E(85289): 1.5e-196
Smith-Waterman score: 5081; 99.3% identity (99.3% similar) in 764 aa overlap (53-811:3-766)
30 40 50 60 70 80
pF1KSD SSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRYNRKRELSYPKNESFNNQSR
::::::::::::::::::::::::::::::
XP_005 MMDGKNSSGSKRYNRKRELSYPKNESFNNQSR
10 20 30
90 100 110 120 130 140
pF1KSD RSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVAEAQRAEFSPAQFSGPKKINLNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVAEAQRAEFSPAQFSGPKKINLNH
40 50 60 70 80 90
150 160 170 180 190 200
pF1KSD LLNFTFEPRGQTGHFEGSGHGSWGKRNKWGHKPFNKELFLQANCQFVVSEDQDYTAHFAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLNFTFEPRGQTGHFEGSGHGSWGKRNKWGHKPFNKELFLQANCQFVVSEDQDYTAHFAD
100 110 120 130 140 150
210 220 230 240 250 260
pF1KSD PDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSK
160 170 180 190 200 210
270 280 290 300 310 320
pF1KSD CPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKREKGVLVALPKSKWMNVDHPIHLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKREKGVLVALPKSKWMNVDHPIHLG
220 230 240 250 260 270
330 340 350 360 370 380
pF1KSD DEQHSQYSKLLLASKEQVLHRVVLEEKVALEQQLAEEKHTPESCFIEAAIQELKTREEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DEQHSQYSKLLLASKEQVLHRVVLEEKVALEQQLAEEKHTPESCFIEAAIQELKTREEAL
280 290 300 310 320 330
390 400 410 420 430
pF1KSD SGLAGSRREVTGVVAALEQLVLMAPLAKESVFQPRK-----GVLEYLSAFDEETTEVCSL
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::
XP_005 SGLAGSRREVTGVVAALEQLVLMAPLAKESVFQPRKSLLQQGVLEYLSAFDEETTEVCSL
340 350 360 370 380 390
440 450 460 470 480 490
pF1KSD DTPSRPLALPLVEEEEAVSEPEPEGLPEACDDLELADDNLKEGTICTESSQQEPITKSGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DTPSRPLALPLVEEEEAVSEPEPEGLPEACDDLELADDNLKEGTICTESSQQEPITKSGF
400 410 420 430 440 450
500 510 520 530 540 550
pF1KSD TRLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLERSPEKISATVVEIAGYSMSEDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TRLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLERSPEKISATVVEIAGYSMSEDV
460 470 480 490 500 510
560 570 580 590 600 610
pF1KSD RQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSDDIEKRKRQRQKKAREERRRERR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSDDIEKRKRQRQKKAREERRRERR
520 530 540 550 560 570
620 630 640 650 660 670
pF1KSD IEIEENKKQGKYPEVHIPLENLQQFPAFNSYTCSSDSALGPTSTEGHGALSISPLSRSPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IEIEENKKQGKYPEVHIPLENLQQFPAFNSYTCSSDSALGPTSTEGHGALSISPLSRSPG
580 590 600 610 620 630
680 690 700 710 720 730
pF1KSD SHADFLLTPLSPTASQGSPSFCVGSLEEDSPFPSFAQMLRVGKAKADVWPKTAPKKDENS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SHADFLLTPLSPTASQGSPSFCVGSLEEDSPFPSFAQMLRVGKAKADVWPKTAPKKDENS
640 650 660 670 680 690
740 750 760 770 780 790
pF1KSD LVPPAPVDSDGESDNSDRVPVPSFQNSFSQAIEAAFMKLDTPATSDPLSEEKGGKKRKKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LVPPAPVDSDGESDNSDRVPVPSFQNSFSQAIEAAFMKLDTPATSDPLSEEKGGKKRKKQ
700 710 720 730 740 750
800 810
pF1KSD KQKLLFSTSVVHTK
::::::::::::::
XP_005 KQKLLFSTSVVHTK
760
>>XP_016875772 (OMIM: 615998) PREDICTED: RING finger pro (734 aa)
initn: 2827 init1: 2827 opt: 4548 Z-score: 3268.5 bits: 615.5 E(85289): 2.6e-175
Smith-Waterman score: 4548; 97.3% identity (97.9% similar) in 704 aa overlap (1-699:1-702)
10 20 30 40 50 60
pF1KSD MPLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD KRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD EAQRAEFSPAQFSGPKKINLNHLLNFTFEPRGQTGHFEGSGHGSWGKRNKWGHKPFNKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAQRAEFSPAQFSGPKKINLNHLLNFTFEPRGQTGHFEGSGHGSWGKRNKWGHKPFNKEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD FLQANCQFVVSEDQDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FLQANCQFVVSEDQDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD GHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKRE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD KGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVVLEEKVALEQQLAEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVVLEEKVALEQQLAEEK
310 320 330 340 350 360
370 380 390 400 410
pF1KSD HTPESCFIEAAIQELKTREEALSGLAGSRREVTGVVAALEQLVLMAPLAKESVFQPRK--
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HTPESCFIEAAIQELKTREEALSGLAGSRREVTGVVAALEQLVLMAPLAKESVFQPRKSL
370 380 390 400 410 420
420 430 440 450 460 470
pF1KSD ---GVLEYLSAFDEETTEVCSLDTPSRPLALPLVEEEEAVSEPEPEGLPEACDDLELADD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LQQGVLEYLSAFDEETTEVCSLDTPSRPLALPLVEEEEAVSEPEPEGLPEACDDLELADD
430 440 450 460 470 480
480 490 500 510 520 530
pF1KSD NLKEGTICTESSQQEPITKSGFTRLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLKEGTICTESSQQEPITKSGFTRLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLE
490 500 510 520 530 540
540 550 560 570 580 590
pF1KSD RSPEKISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSPEKISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSD
550 560 570 580 590 600
600 610 620 630 640 650
pF1KSD DIEKRKRQRQKKAREERRRERRIEIEENKKQGKYPEVHIPLENLQQFPAFNSYTCSSDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DIEKRKRQRQKKAREERRRERRIEIEENKKQGKYPEVHIPLENLQQFPAFNSYTCSSDSA
610 620 630 640 650 660
660 670 680 690 700 710
pF1KSD LGPTSTEGHGALSISPLSRSPGSHADFLLTPLSPTASQGSPSFCVGSLEEDSPFPSFAQM
::::::::::::::::::::::::: : :. .:. : . :
XP_016 LGPTSTEGHGALSISPLSRSPGSHAG-LWFPFRLSADP-SVTHCQSGQSLILRWESGRRL
670 680 690 700 710
720 730 740 750 760 770
pF1KSD LRVGKAKADVWPKTAPKKDENSLVPPAPVDSDGESDNSDRVPVPSFQNSFSQAIEAAFMK
XP_016 SLPFLCPGILLACGWI
720 730
811 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 00:58:23 2016 done: Thu Nov 3 00:58:25 2016
Total Scan time: 10.950 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]