FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0264, 414 aa
  1>>>pF1KSDA0264 414 - 414 aa - 414 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9176+/-0.00106; mu= 9.3979+/- 0.063
 mean_var=102.1608+/-19.981, 0's: 0 Z-trim(106.1): 27  B-trim: 11 in 1/49
 Lambda= 0.126891
 statistics sampled from 8800 (8810) to 8800 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.271), width:  16
 Scan time:  2.780

The best scores are:                                      opt bits E(32554)
CCDS4013.1 MRPS27 gene_id:23107|Hs108|chr5         ( 414) 2689 503.0 2.1e-142
CCDS75257.1 MRPS27 gene_id:23107|Hs108|chr5        ( 358) 2326 436.5 1.9e-122
CCDS68890.1 MRPS27 gene_id:23107|Hs108|chr5        ( 428) 2091 393.5  2e-109


>>CCDS4013.1 MRPS27 gene_id:23107|Hs108|chr5              (414 aa)
 initn: 2689 init1: 2689 opt: 2689  Z-score: 2670.1  bits: 503.0 E(32554): 2.1e-142
Smith-Waterman score: 2689; 99.8% identity (99.8% similar) in 414 aa overlap (1-414:1-414)

               10        20        30        40        50        60
pF1KSD MAASIVRRGMLLARQVVLPQLSPAGKRYLLSSAYVDSHKWEAREKEHYCLADLASLMDKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MAASIVRRGMLLARQVVLPQLSPAGKRYLLSSAYVDSHKWEAREKEHYCLADLASLMDKT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD FERKLPVSSLTISRLIDNISSREEIDHAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 FERKLPVSSLTISRLIDNISSREEIDHAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD AQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 AQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD LSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQLYGYALLGKVELQQGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQLYGYALLGKVELQQGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD RAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLDAVLKALTSADGASEEQ
       ::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS40 RAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLGAVLKALTSADGASEEQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD SQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 SQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLV
              310       320       330       340       350       360

              370       380       390       400       410    
pF1KSD KEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQAQKAAKASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 KEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQAQKAAKASA
              370       380       390       400       410    

>>CCDS75257.1 MRPS27 gene_id:23107|Hs108|chr5             (358 aa)
 initn: 2326 init1: 2326 opt: 2326  Z-score: 2311.9  bits: 436.5 E(32554): 1.9e-122
Smith-Waterman score: 2326; 99.7% identity (99.7% similar) in 358 aa overlap (57-414:1-358)

         30        40        50        60        70        80      
pF1KSD RYLLSSAYVDSHKWEAREKEHYCLADLASLMDKTFERKLPVSSLTISRLIDNISSREEID
                                     ::::::::::::::::::::::::::::::
CCDS75                               MDKTFERKLPVSSLTISRLIDNISSREEID
                                             10        20        30

         90       100       110       120       130       140      
pF1KSD HAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 HAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNL
               40        50        60        70        80        90

        150       160       170       180       190       200      
pF1KSD LMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQLLSLYVLFHCLAKKTDFSWEEERNFGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQLLSLYVLFHCLAKKTDFSWEEERNFGA
              100       110       120       130       140       150

        210       220       230       240       250       260      
pF1KSD SLLLPGLKQKNSVGFSSQLYGYALLGKVELQQGLRAVYHNMPLIWKPGYLDRALQVMEKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SLLLPGLKQKNSVGFSSQLYGYALLGKVELQQGLRAVYHNMPLIWKPGYLDRALQVMEKV
              160       170       180       190       200       210

        270       280       290       300       310       320      
pF1KSD AASPEDIKLCREALDVLDAVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSK
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS75 AASPEDIKLCREALDVLGAVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSK
              220       230       240       250       260       270

        330       340       350       360       370       380      
pF1KSD LPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDL
              280       290       300       310       320       330

        390       400       410    
pF1KSD VQLIQREQQQREQAKQEYQAQKAAKASA
       ::::::::::::::::::::::::::::
CCDS75 VQLIQREQQQREQAKQEYQAQKAAKASA
              340       350        

>>CCDS68890.1 MRPS27 gene_id:23107|Hs108|chr5             (428 aa)
 initn: 2091 init1: 2091 opt: 2091  Z-score: 2078.2  bits: 393.5 E(32554): 2e-109
Smith-Waterman score: 2651; 96.5% identity (96.5% similar) in 428 aa overlap (1-414:1-428)

               10        20        30        40        50        60
pF1KSD MAASIVRRGMLLARQVVLPQLSPAGKRYLLSSAYVDSHKWEAREKEHYCLADLASLMDKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MAASIVRRGMLLARQVVLPQLSPAGKRYLLSSAYVDSHKWEAREKEHYCLADLASLMDKT
               10        20        30        40        50        60

               70        80        90                     100      
pF1KSD FERKLPVSSLTISRLIDNISSREEIDHAEYYLYK--------------FRHSPNCWYLRN
       ::::::::::::::::::::::::::::::::::              ::::::::::::
CCDS68 FERKLPVSSLTISRLIDNISSREEIDHAEYYLYKKGECSSSNPQNYSRFRHSPNCWYLRN
               70        80        90       100       110       120

        110       120       130       140       150       160      
pF1KSD WTIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDALSVVFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 WTIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDALSVVFE
              130       140       150       160       170       180

        170       180       190       200       210       220      
pF1KSD VMMQEAFEVPSTQLLSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 VMMQEAFEVPSTQLLSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQLY
              190       200       210       220       230       240

        230       240       250       260       270       280      
pF1KSD GYALLGKVELQQGLRAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLDAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS68 GYALLGKVELQQGLRAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLGAV
              250       260       270       280       290       300

        290       300       310       320       330       340      
pF1KSD LKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 LKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGK
              310       320       330       340       350       360

        350       360       370       380       390       400      
pF1KSD IESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 IESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQA
              370       380       390       400       410       420

        410    
pF1KSD QKAAKASA
       ::::::::
CCDS68 QKAAKASA
               




414 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 00:59:16 2016 done: Thu Nov  3 00:59:17 2016
 Total Scan time:  2.780 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]