Result of FASTA (ccds) for
pF1KSDA0271
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0271, 193 aa
1>>>pF1KSDA0271 193 - 193 aa - 193 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0393+/-0.000679; mu= 14.9083+/- 0.041
mean_var=62.9604+/-12.565, 0's: 0 Z-trim(110.0): 24 B-trim: 3 in 1/48
Lambda= 0.161637
statistics sampled from 11262 (11284) to 11262 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.347), width: 16
Scan time: 1.550
The best scores are: opt bits E(32554)
CCDS9591.1 BCL2L2 gene_id:599|Hs108|chr14 ( 193) 1290 308.7 1.4e-84
CCDS55906.1 PABPN1 gene_id:100529063|Hs108|chr14 ( 333) 997 240.5 8.2e-64
CCDS13189.1 BCL2L1 gene_id:598|Hs108|chr20 ( 233) 530 131.5 3.7e-31
CCDS11981.1 BCL2 gene_id:596|Hs108|chr18 ( 239) 514 127.8 5.1e-30
CCDS45882.1 BCL2 gene_id:596|Hs108|chr18 ( 205) 434 109.1 1.8e-24
>>CCDS9591.1 BCL2L2 gene_id:599|Hs108|chr14 (193 aa)
initn: 1290 init1: 1290 opt: 1290 Z-score: 1631.8 bits: 308.7 E(32554): 1.4e-84
Smith-Waterman score: 1290; 99.5% identity (100.0% similar) in 193 aa overlap (1-193:1-193)
10 20 30 40 50 60
pF1KSD MATPASAPDTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFETRFRRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MATPASAPDTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFETRFRRT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD FSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEPLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 FSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEPLVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD QVQEWMVAYLETRLADWIHSSGGWAEFTALYGDGALEEARRLREGNWASVRTVLTGAVAL
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 QVQEWMVAYLETQLADWIHSSGGWAEFTALYGDGALEEARRLREGNWASVRTVLTGAVAL
130 140 150 160 170 180
190
pF1KSD GALVTVGAFFASK
:::::::::::::
CCDS95 GALVTVGAFFASK
190
>>CCDS55906.1 PABPN1 gene_id:100529063|Hs108|chr14 (333 aa)
initn: 987 init1: 987 opt: 997 Z-score: 1259.1 bits: 240.5 E(32554): 8.2e-64
Smith-Waterman score: 997; 90.4% identity (94.6% similar) in 166 aa overlap (1-164:1-165)
10 20 30 40 50 60
pF1KSD MATPASAPDTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFETRFRRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MATPASAPDTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFETRFRRT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD FSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEPLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEPLVG
70 80 90 100 110 120
130 140 150 160 170
pF1KSD QVQEWMVAYLETRLADWIHSSGGWAEFTALYGD--GALEEARRLREGNWASVRTVLTGAV
::::::::::::.::::::::::: :. :. . :::..:.:
CCDS55 QVQEWMVAYLETQLADWIHSSGGW-ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPP
130 140 150 160 170
180 190
pF1KSD ALGALVTVGAFFASK
CCDS55 PGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHP
180 190 200 210 220 230
>>CCDS13189.1 BCL2L1 gene_id:598|Hs108|chr20 (233 aa)
initn: 594 init1: 506 opt: 530 Z-score: 672.8 bits: 131.5 E(32554): 3.7e-31
Smith-Waterman score: 530; 51.7% identity (77.5% similar) in 151 aa overlap (37-185:82-231)
10 20 30 40 50 60
pF1KSD APDTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFETRFRRTFSDLAA
: : ..::.: :::::: :.::.::::..
CCDS13 NGNPSWHLADSPAVNGATGHSSSLDAREVIPMA-AVKQALREAGDEFELRYRRAFSDLTS
60 70 80 90 100 110
70 80 90 100 110 120
pF1KSD QLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEPLVGQVQEWM
:::.:::.: : : :: .:::. : ::::.:::: ::.:::.:::.:::. ::... ::
CCDS13 QLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWM
120 130 140 150 160 170
130 140 150 160 170 180
pF1KSD VAYLETRLADWIHSSGGWAEFTALYGDGALEEARRLRE--GNWASVRTVLTGAVALGALV
..::. .: ::. .::: :. :::..: :.:. .: . : . ...:.: ::.:
CCDS13 ATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLF
180 190 200 210 220 230
190
pF1KSD TVGAFFASK
.
CCDS13 SRK
>>CCDS11981.1 BCL2 gene_id:596|Hs108|chr18 (239 aa)
initn: 489 init1: 459 opt: 514 Z-score: 652.5 bits: 127.8 E(32554): 5.1e-30
Smith-Waterman score: 514; 45.4% identity (74.8% similar) in 163 aa overlap (31-193:82-239)
10 20 30 40 50 60
pF1KSD MATPASAPDTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFETRFRRT
:::. .:. .: ..: :::.: :.::
CCDS11 QPGHTPHPAASRDPVARTSPLQTPAAPGAAAGPALSPVPPVVHLTLRQAGDDFSRRYRRD
60 70 80 90 100 110
70 80 90 100 110 120
pF1KSD FSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEPLVG
:.....:::.:: .:. ::. : .:::. : ::::.:::: ::...:.::::.:: :::
CCDS11 FAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVD
120 130 140 150 160 170
130 140 150 160 170 180
pF1KSD QVQEWMVAYLETRLADWIHSSGGWAEFTALYGDGALEEARRLREGNWASVRTVLTGAVAL
.. ::. ::. .: ::...::: :. ::: . : : . .: :..:.:. :. .
CCDS11 NIALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSM----RPLFDFSWLSLKTLLSLAL-V
180 190 200 210 220
190
pF1KSD GALVTVGAFFASK
:: .:.::... :
CCDS11 GACITLGAYLGHK
230
>>CCDS45882.1 BCL2 gene_id:596|Hs108|chr18 (205 aa)
initn: 434 init1: 434 opt: 434 Z-score: 552.6 bits: 109.1 E(32554): 1.8e-24
Smith-Waterman score: 434; 50.0% identity (78.9% similar) in 114 aa overlap (31-144:82-195)
10 20 30 40 50 60
pF1KSD MATPASAPDTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFETRFRRT
:::. .:. .: ..: :::.: :.::
CCDS45 QPGHTPHPAASRDPVARTSPLQTPAAPGAAAGPALSPVPPVVHLTLRQAGDDFSRRYRRD
60 70 80 90 100 110
70 80 90 100 110 120
pF1KSD FSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEPLVG
:.....:::.:: .:. ::. : .:::. : ::::.:::: ::...:.::::.:: :::
CCDS45 FAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVD
120 130 140 150 160 170
130 140 150 160 170 180
pF1KSD QVQEWMVAYLETRLADWIHSSGGWAEFTALYGDGALEEARRLREGNWASVRTVLTGAVAL
.. ::. ::. .: ::...:::
CCDS45 NIALWMTEYLNRHLHTWIQDNGGWVGALGDVSLG
180 190 200
193 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 01:00:36 2016 done: Thu Nov 3 01:00:37 2016
Total Scan time: 1.550 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]