FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0273, 330 aa
  1>>>pF1KSDA0273 330 - 330 aa - 330 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8088+/-0.000822; mu= 13.0783+/- 0.049
 mean_var=66.9365+/-13.186, 0's: 0 Z-trim(106.5): 13  B-trim: 0 in 0/54
 Lambda= 0.156763
 statistics sampled from 9024 (9031) to 9024 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.277), width:  16
 Scan time:  1.880

The best scores are:                                      opt bits E(32554)
CCDS43723.1 PHYHIP gene_id:9796|Hs108|chr8         ( 330) 2269 522.0 2.6e-148
CCDS44405.1 PHYHIPL gene_id:84457|Hs108|chr10      ( 350) 1778 411.0 7.3e-115
CCDS7254.1 PHYHIPL gene_id:84457|Hs108|chr10       ( 376) 1778 411.0 7.8e-115


>>CCDS43723.1 PHYHIP gene_id:9796|Hs108|chr8              (330 aa)
 initn: 2269 init1: 2269 opt: 2269  Z-score: 2776.2  bits: 522.0 E(32554): 2.6e-148
Smith-Waterman score: 2269; 100.0% identity (100.0% similar) in 330 aa overlap (1-330:1-330)

               10        20        30        40        50        60
pF1KSD MELLSTPHSIEINNITCDSFRISWAMEDSDLERVTHYFIDLNKKENKNSNKFKHRDVPTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MELLSTPHSIEINNITCDSFRISWAMEDSDLERVTHYFIDLNKKENKNSNKFKHRDVPTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LVAKAVPLPMTVRGHWFLSPRTEYSVAVQTAVKQSDGEYLVSGWSETVEFCTGDYAKEHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LVAKAVPLPMTVRGHWFLSPRTEYSVAVQTAVKQSDGEYLVSGWSETVEFCTGDYAKEHL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD AQLQEKAEQIAGRMLRFSVFYRNHHKEYFQHARTHCGNMLQPYLKDNSGSHGSPTSGMLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AQLQEKAEQIAGRMLRFSVFYRNHHKEYFQHARTHCGNMLQPYLKDNSGSHGSPTSGMLH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GVFFSCNTEFNTGQPPQDSPYGRWRFQIPAQRLFNPSTNLYFADFYCMYTAYHYAILVLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GVFFSCNTEFNTGQPPQDSPYGRWRFQIPAQRLFNPSTNLYFADFYCMYTAYHYAILVLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD PKGSLGDRFCRDRLPLLDIACNKFLTCSVEDGELVFRHAQDLILEIIYTEPVDLSLGTLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PKGSLGDRFCRDRLPLLDIACNKFLTCSVEDGELVFRHAQDLILEIIYTEPVDLSLGTLG
              250       260       270       280       290       300

              310       320       330
pF1KSD EISGHQLMSLSTADAKKDPSCKTCNISVGR
       ::::::::::::::::::::::::::::::
CCDS43 EISGHQLMSLSTADAKKDPSCKTCNISVGR
              310       320       330

>>CCDS44405.1 PHYHIPL gene_id:84457|Hs108|chr10           (350 aa)
 initn: 1778 init1: 1778 opt: 1778  Z-score: 2175.6  bits: 411.0 E(32554): 7.3e-115
Smith-Waterman score: 1778; 76.1% identity (92.1% similar) in 330 aa overlap (1-330:21-350)

                                   10        20        30        40
pF1KSD                     MELLSTPHSIEINNITCDSFRISWAMEDSDLERVTHYFID
                           :: : .::.:.:.:::::::.::: :.... .:.::::::
CCDS44 MCCDSDFVARNKSQDSGIAEMEELPVPHNIKISNITCDSFKISWEMDSKSKDRITHYFID
               10        20        30        40        50        60

               50        60        70        80        90       100
pF1KSD LNKKENKNSNKFKHRDVPTKLVAKAVPLPMTVRGHWFLSPRTEYSVAVQTAVKQSDGEYL
       ::::::::::::::.:::::::::::::::::::::::::::::.:::::: :: ::.:.
CCDS44 LNKKENKNSNKFKHKDVPTKLVAKAVPLPMTVRGHWFLSPRTEYTVAVQTASKQVDGDYV
               70        80        90       100       110       120

              110       120       130       140       150       160
pF1KSD VSGWSETVEFCTGDYAKEHLAQLQEKAEQIAGRMLRFSVFYRNHHKEYFQHARTHCGNML
       :: ::: .::::.::.: ::.:: :::: ::::::.:::::::.:::::...: : :: .
CCDS44 VSEWSEIIEFCTADYSKVHLTQLLEKAEVIAGRMLKFSVFYRNQHKEYFDYVREHHGNAM
              130       140       150       160       170       180

              170       180       190       200       210       220
pF1KSD QPYLKDNSGSHGSPTSGMLHGVFFSCNTEFNTGQPPQDSPYGRWRFQIPAQRLFNPSTNL
       :: .:::::::::: :: :.:.::::.::::::.:::::::::.::.: :..::::.:::
CCDS44 QPSVKDNSGSHGSPISGKLEGIFFSCSTEFNTGKPPQDSPYGRYRFEIAAEKLFNPNTNL
              190       200       210       220       230       240

              230       240       250       260       270       280
pF1KSD YFADFYCMYTAYHYAILVLAPKGSLGDRFCRDRLPLLDIACNKFLTCSVEDGELVFRHAQ
       ::.:::::::::::.:::.:: :: ::.::..::: :.   ::::::. ::: ::..:::
CCDS44 YFGDFYCMYTAYHYVILVIAPVGSPGDEFCKQRLPQLNSKDNKFLTCTEEDGVLVYHHAQ
              250       260       270       280       290       300

              290       300       310       320       330
pF1KSD DLILEIIYTEPVDLSLGTLGEISGHQLMSLSTADAKKDPSCKTCNISVGR
       :.:::.:::.:::::.::..::.::::::::::.::::::::::::::::
CCDS44 DVILEVIYTDPVDLSVGTVAEITGHQLMSLSTANAKKDPSCKTCNISVGR
              310       320       330       340       350

>>CCDS7254.1 PHYHIPL gene_id:84457|Hs108|chr10            (376 aa)
 initn: 1778 init1: 1778 opt: 1778  Z-score: 2175.1  bits: 411.0 E(32554): 7.8e-115
Smith-Waterman score: 1778; 76.1% identity (92.1% similar) in 330 aa overlap (1-330:47-376)

                                             10        20        30
pF1KSD                               MELLSTPHSIEINNITCDSFRISWAMEDSD
                                     :: : .::.:.:.:::::::.::: :....
CCDS72 CEEVIKNLSLEAIQLCDRDGNKSQDSGIAEMEELPVPHNIKISNITCDSFKISWEMDSKS
         20        30        40        50        60        70      

               40        50        60        70        80        90
pF1KSD LERVTHYFIDLNKKENKNSNKFKHRDVPTKLVAKAVPLPMTVRGHWFLSPRTEYSVAVQT
        .:.::::::::::::::::::::.:::::::::::::::::::::::::::::.:::::
CCDS72 KDRITHYFIDLNKKENKNSNKFKHKDVPTKLVAKAVPLPMTVRGHWFLSPRTEYTVAVQT
         80        90       100       110       120       130      

              100       110       120       130       140       150
pF1KSD AVKQSDGEYLVSGWSETVEFCTGDYAKEHLAQLQEKAEQIAGRMLRFSVFYRNHHKEYFQ
       : :: ::.:.:: ::: .::::.::.: ::.:: :::: ::::::.:::::::.:::::.
CCDS72 ASKQVDGDYVVSEWSEIIEFCTADYSKVHLTQLLEKAEVIAGRMLKFSVFYRNQHKEYFD
        140       150       160       170       180       190      

              160       170       180       190       200       210
pF1KSD HARTHCGNMLQPYLKDNSGSHGSPTSGMLHGVFFSCNTEFNTGQPPQDSPYGRWRFQIPA
       ..: : :: .:: .:::::::::: :: :.:.::::.::::::.:::::::::.::.: :
CCDS72 YVREHHGNAMQPSVKDNSGSHGSPISGKLEGIFFSCSTEFNTGKPPQDSPYGRYRFEIAA
        200       210       220       230       240       250      

              220       230       240       250       260       270
pF1KSD QRLFNPSTNLYFADFYCMYTAYHYAILVLAPKGSLGDRFCRDRLPLLDIACNKFLTCSVE
       ..::::.:::::.:::::::::::.:::.:: :: ::.::..::: :.   ::::::. :
CCDS72 EKLFNPNTNLYFGDFYCMYTAYHYVILVIAPVGSPGDEFCKQRLPQLNSKDNKFLTCTEE
        260       270       280       290       300       310      

              280       290       300       310       320       330
pF1KSD DGELVFRHAQDLILEIIYTEPVDLSLGTLGEISGHQLMSLSTADAKKDPSCKTCNISVGR
       :: ::..::::.:::.:::.:::::.::..::.::::::::::.::::::::::::::::
CCDS72 DGVLVYHHAQDVILEVIYTDPVDLSVGTVAEITGHQLMSLSTANAKKDPSCKTCNISVGR
        320       330       340       350       360       370      




330 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:02:34 2016 done: Thu Nov  3 01:02:34 2016
 Total Scan time:  1.880 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]