FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDA0273, 330 aa
  1>>>pF1KSDA0273 330 - 330 aa - 330 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4980+/-0.000348; mu= 14.8873+/- 0.022
 mean_var=69.6901+/-13.906, 0's: 0 Z-trim(113.5): 10  B-trim: 0 in 0/60
 Lambda= 0.153634
 statistics sampled from 22880 (22887) to 22880 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.268), width:  16
 Scan time:  5.130

The best scores are:                                      opt bits E(85289)
NP_055574 (OMIM: 608511) phytanoyl-CoA hydroxylase ( 330) 2269 512.0 6.9e-145
XP_006716479 (OMIM: 608511) PREDICTED: phytanoyl-C ( 330) 2269 512.0 6.9e-145
NP_001092805 (OMIM: 608511) phytanoyl-CoA hydroxyl ( 330) 2269 512.0 6.9e-145
XP_016869591 (OMIM: 608511) PREDICTED: phytanoyl-C ( 197) 1383 315.5 5.8e-86


>>NP_055574 (OMIM: 608511) phytanoyl-CoA hydroxylase-int  (330 aa)
 initn: 2269 init1: 2269 opt: 2269  Z-score: 2722.2  bits: 512.0 E(85289): 6.9e-145
Smith-Waterman score: 2269; 100.0% identity (100.0% similar) in 330 aa overlap (1-330:1-330)

               10        20        30        40        50        60
pF1KSD MELLSTPHSIEINNITCDSFRISWAMEDSDLERVTHYFIDLNKKENKNSNKFKHRDVPTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MELLSTPHSIEINNITCDSFRISWAMEDSDLERVTHYFIDLNKKENKNSNKFKHRDVPTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LVAKAVPLPMTVRGHWFLSPRTEYSVAVQTAVKQSDGEYLVSGWSETVEFCTGDYAKEHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LVAKAVPLPMTVRGHWFLSPRTEYSVAVQTAVKQSDGEYLVSGWSETVEFCTGDYAKEHL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD AQLQEKAEQIAGRMLRFSVFYRNHHKEYFQHARTHCGNMLQPYLKDNSGSHGSPTSGMLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AQLQEKAEQIAGRMLRFSVFYRNHHKEYFQHARTHCGNMLQPYLKDNSGSHGSPTSGMLH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GVFFSCNTEFNTGQPPQDSPYGRWRFQIPAQRLFNPSTNLYFADFYCMYTAYHYAILVLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GVFFSCNTEFNTGQPPQDSPYGRWRFQIPAQRLFNPSTNLYFADFYCMYTAYHYAILVLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD PKGSLGDRFCRDRLPLLDIACNKFLTCSVEDGELVFRHAQDLILEIIYTEPVDLSLGTLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PKGSLGDRFCRDRLPLLDIACNKFLTCSVEDGELVFRHAQDLILEIIYTEPVDLSLGTLG
              250       260       270       280       290       300

              310       320       330
pF1KSD EISGHQLMSLSTADAKKDPSCKTCNISVGR
       ::::::::::::::::::::::::::::::
NP_055 EISGHQLMSLSTADAKKDPSCKTCNISVGR
              310       320       330

>>XP_006716479 (OMIM: 608511) PREDICTED: phytanoyl-CoA h  (330 aa)
 initn: 2269 init1: 2269 opt: 2269  Z-score: 2722.2  bits: 512.0 E(85289): 6.9e-145
Smith-Waterman score: 2269; 100.0% identity (100.0% similar) in 330 aa overlap (1-330:1-330)

               10        20        30        40        50        60
pF1KSD MELLSTPHSIEINNITCDSFRISWAMEDSDLERVTHYFIDLNKKENKNSNKFKHRDVPTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MELLSTPHSIEINNITCDSFRISWAMEDSDLERVTHYFIDLNKKENKNSNKFKHRDVPTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LVAKAVPLPMTVRGHWFLSPRTEYSVAVQTAVKQSDGEYLVSGWSETVEFCTGDYAKEHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LVAKAVPLPMTVRGHWFLSPRTEYSVAVQTAVKQSDGEYLVSGWSETVEFCTGDYAKEHL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD AQLQEKAEQIAGRMLRFSVFYRNHHKEYFQHARTHCGNMLQPYLKDNSGSHGSPTSGMLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AQLQEKAEQIAGRMLRFSVFYRNHHKEYFQHARTHCGNMLQPYLKDNSGSHGSPTSGMLH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GVFFSCNTEFNTGQPPQDSPYGRWRFQIPAQRLFNPSTNLYFADFYCMYTAYHYAILVLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GVFFSCNTEFNTGQPPQDSPYGRWRFQIPAQRLFNPSTNLYFADFYCMYTAYHYAILVLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD PKGSLGDRFCRDRLPLLDIACNKFLTCSVEDGELVFRHAQDLILEIIYTEPVDLSLGTLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PKGSLGDRFCRDRLPLLDIACNKFLTCSVEDGELVFRHAQDLILEIIYTEPVDLSLGTLG
              250       260       270       280       290       300

              310       320       330
pF1KSD EISGHQLMSLSTADAKKDPSCKTCNISVGR
       ::::::::::::::::::::::::::::::
XP_006 EISGHQLMSLSTADAKKDPSCKTCNISVGR
              310       320       330

>>NP_001092805 (OMIM: 608511) phytanoyl-CoA hydroxylase-  (330 aa)
 initn: 2269 init1: 2269 opt: 2269  Z-score: 2722.2  bits: 512.0 E(85289): 6.9e-145
Smith-Waterman score: 2269; 100.0% identity (100.0% similar) in 330 aa overlap (1-330:1-330)

               10        20        30        40        50        60
pF1KSD MELLSTPHSIEINNITCDSFRISWAMEDSDLERVTHYFIDLNKKENKNSNKFKHRDVPTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MELLSTPHSIEINNITCDSFRISWAMEDSDLERVTHYFIDLNKKENKNSNKFKHRDVPTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD LVAKAVPLPMTVRGHWFLSPRTEYSVAVQTAVKQSDGEYLVSGWSETVEFCTGDYAKEHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVAKAVPLPMTVRGHWFLSPRTEYSVAVQTAVKQSDGEYLVSGWSETVEFCTGDYAKEHL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD AQLQEKAEQIAGRMLRFSVFYRNHHKEYFQHARTHCGNMLQPYLKDNSGSHGSPTSGMLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQLQEKAEQIAGRMLRFSVFYRNHHKEYFQHARTHCGNMLQPYLKDNSGSHGSPTSGMLH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD GVFFSCNTEFNTGQPPQDSPYGRWRFQIPAQRLFNPSTNLYFADFYCMYTAYHYAILVLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVFFSCNTEFNTGQPPQDSPYGRWRFQIPAQRLFNPSTNLYFADFYCMYTAYHYAILVLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD PKGSLGDRFCRDRLPLLDIACNKFLTCSVEDGELVFRHAQDLILEIIYTEPVDLSLGTLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKGSLGDRFCRDRLPLLDIACNKFLTCSVEDGELVFRHAQDLILEIIYTEPVDLSLGTLG
              250       260       270       280       290       300

              310       320       330
pF1KSD EISGHQLMSLSTADAKKDPSCKTCNISVGR
       ::::::::::::::::::::::::::::::
NP_001 EISGHQLMSLSTADAKKDPSCKTCNISVGR
              310       320       330

>>XP_016869591 (OMIM: 608511) PREDICTED: phytanoyl-CoA h  (197 aa)
 initn: 1383 init1: 1383 opt: 1383  Z-score: 1664.3  bits: 315.5 E(85289): 5.8e-86
Smith-Waterman score: 1383; 100.0% identity (100.0% similar) in 197 aa overlap (134-330:1-197)

           110       120       130       140       150       160   
pF1KSD WSETVEFCTGDYAKEHLAQLQEKAEQIAGRMLRFSVFYRNHHKEYFQHARTHCGNMLQPY
                                     ::::::::::::::::::::::::::::::
XP_016                               MLRFSVFYRNHHKEYFQHARTHCGNMLQPY
                                             10        20        30

           170       180       190       200       210       220   
pF1KSD LKDNSGSHGSPTSGMLHGVFFSCNTEFNTGQPPQDSPYGRWRFQIPAQRLFNPSTNLYFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LKDNSGSHGSPTSGMLHGVFFSCNTEFNTGQPPQDSPYGRWRFQIPAQRLFNPSTNLYFA
               40        50        60        70        80        90

           230       240       250       260       270       280   
pF1KSD DFYCMYTAYHYAILVLAPKGSLGDRFCRDRLPLLDIACNKFLTCSVEDGELVFRHAQDLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DFYCMYTAYHYAILVLAPKGSLGDRFCRDRLPLLDIACNKFLTCSVEDGELVFRHAQDLI
              100       110       120       130       140       150

           290       300       310       320       330
pF1KSD LEIIYTEPVDLSLGTLGEISGHQLMSLSTADAKKDPSCKTCNISVGR
       :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEIIYTEPVDLSLGTLGEISGHQLMSLSTADAKKDPSCKTCNISVGR
              160       170       180       190       




330 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 01:02:35 2016 done: Thu Nov  3 01:02:35 2016
 Total Scan time:  5.130 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]