Result of FASTA (omim) for
pF1KSDA0282
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KSDA0282, 664 aa
1>>>pF1KSDA0282 664 - 664 aa - 664 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.2280+/-0.000396; mu= 7.0013+/- 0.025
mean_var=188.0698+/-39.441, 0's: 0 Z-trim(118.9): 138 B-trim: 702 in 1/54
Lambda= 0.093522
statistics sampled from 32108 (32262) to 32108 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.378), width: 16
Scan time: 10.900
The best scores are: opt bits E(85289)
NP_055978 (OMIM: 606555) E3 ubiquitin-protein liga ( 710) 4566 628.9 1.9e-179
XP_016876434 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 710) 4566 628.9 1.9e-179
XP_016876435 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 706) 4523 623.1 1.1e-177
XP_016876436 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 692) 4275 589.6 1.2e-167
XP_016876437 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 688) 4232 583.8 6.9e-166
XP_005267359 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 714) 3808 526.6 1.2e-148
NP_443210 (OMIM: 606555) E3 ubiquitin-protein liga ( 550) 3691 510.8 5.5e-144
XP_016876433 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 732) 3692 511.0 6.2e-144
XP_005267358 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 777) 3691 510.9 7.1e-144
XP_006720081 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 795) 3691 510.9 7.2e-144
XP_016876432 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 791) 3648 505.1 4e-142
XP_011534691 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 802) 3648 505.1 4.1e-142
XP_016876439 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 593) 3027 421.2 5.4e-117
XP_016876438 (OMIM: 606555) PREDICTED: E3 ubiquiti ( 611) 3027 421.2 5.5e-117
NP_001287818 (OMIM: 610584) tripartite motif-conta ( 721) 2411 338.2 6.5e-92
NP_001004342 (OMIM: 610584) tripartite motif-conta ( 783) 2387 334.9 6.6e-91
XP_016856812 (OMIM: 610584) PREDICTED: tripartite ( 854) 2387 335.0 7e-91
XP_011542494 (OMIM: 610584) PREDICTED: tripartite ( 781) 2381 334.1 1.2e-90
NP_001287688 (OMIM: 609317) E3 ubiquitin-protein l ( 716) 610 95.2 9.2e-19
NP_061170 (OMIM: 609317) E3 ubiquitin-protein liga ( 728) 610 95.2 9.3e-19
XP_016865111 (OMIM: 609317) PREDICTED: E3 ubiquiti ( 733) 607 94.8 1.2e-18
XP_016865110 (OMIM: 609317) PREDICTED: E3 ubiquiti ( 745) 607 94.8 1.3e-18
XP_016865112 (OMIM: 609317) PREDICTED: E3 ubiquiti ( 529) 596 93.2 2.7e-18
XP_016884728 (OMIM: 300204,300928) PREDICTED: prob ( 685) 562 88.7 7.9e-17
NP_438112 (OMIM: 300204,300928) probable E3 ubiqui ( 705) 562 88.7 8.1e-17
XP_016885029 (OMIM: 189960,300000,300552) PREDICTE ( 552) 558 88.1 9.7e-17
NP_000372 (OMIM: 189960,300000,300552) E3 ubiquiti ( 667) 558 88.1 1.1e-16
NP_001092094 (OMIM: 189960,300000,300552) E3 ubiqu ( 667) 558 88.1 1.1e-16
XP_016885025 (OMIM: 189960,300000,300552) PREDICTE ( 667) 558 88.1 1.1e-16
NP_001180206 (OMIM: 189960,300000,300552) E3 ubiqu ( 667) 558 88.1 1.1e-16
NP_150632 (OMIM: 189960,300000,300552) E3 ubiquiti ( 667) 558 88.1 1.1e-16
XP_005262119 (OMIM: 300204,300928) PREDICTED: prob ( 715) 507 81.3 1.4e-14
NP_036348 (OMIM: 300204,300928) probable E3 ubiqui ( 735) 507 81.3 1.4e-14
NP_001287681 (OMIM: 609317) E3 ubiquitin-protein l ( 573) 487 78.5 7.7e-14
NP_001180208 (OMIM: 189960,300000,300552) E3 ubiqu ( 489) 482 77.8 1.1e-13
XP_016885031 (OMIM: 189960,300000,300552) PREDICTE ( 489) 482 77.8 1.1e-13
XP_011543828 (OMIM: 189960,300000,300552) PREDICTE ( 718) 419 69.4 5.3e-11
XP_006724555 (OMIM: 189960,300000,300552) PREDICTE ( 718) 419 69.4 5.3e-11
XP_016885023 (OMIM: 189960,300000,300552) PREDICTE ( 718) 419 69.4 5.3e-11
XP_011543829 (OMIM: 189960,300000,300552) PREDICTE ( 718) 419 69.4 5.3e-11
XP_005274594 (OMIM: 189960,300000,300552) PREDICTE ( 718) 419 69.4 5.3e-11
XP_011543827 (OMIM: 189960,300000,300552) PREDICTE ( 718) 419 69.4 5.3e-11
XP_005274593 (OMIM: 189960,300000,300552) PREDICTE ( 718) 419 69.4 5.3e-11
NP_001269307 (OMIM: 600986) tripartite motif-conta ( 633) 402 67.1 2.3e-10
XP_016885030 (OMIM: 189960,300000,300552) PREDICTE ( 540) 342 58.9 5.7e-08
NP_001180207 (OMIM: 189960,300000,300552) E3 ubiqu ( 540) 342 58.9 5.7e-08
NP_997279 (OMIM: 616923) RING finger protein 207 [ ( 634) 315 55.3 8e-07
XP_016856748 (OMIM: 616923) PREDICTED: RING finger ( 656) 315 55.3 8.2e-07
NP_115977 (OMIM: 606131) E3 ubiquitin-protein liga ( 353) 296 52.6 3e-06
XP_016858048 (OMIM: 606131) PREDICTED: E3 ubiquiti ( 379) 296 52.6 3.2e-06
>>NP_055978 (OMIM: 606555) E3 ubiquitin-protein ligase T (710 aa)
initn: 4566 init1: 4566 opt: 4566 Z-score: 3342.6 bits: 628.9 E(85289): 1.9e-179
Smith-Waterman score: 4566; 99.8% identity (100.0% similar) in 661 aa overlap (1-661:1-661)
10 20 30 40 50 60
pF1KSD MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEVAWFAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEVAWFAF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD DPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGIHYWELTVDRYDNHPDPAFGVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGIHYWELTVDRYDNHPDPAFGVAR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD MDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDFNRKNLTF
::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
NP_055 MDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDLNRKNLTF
610 620 630 640 650 660
pF1KSD FYQR
:
NP_055 FINDEQQGPIAFDNVEGLFFPAVSLNRNVQVTLHTGLPVPDFYSSRASIA
670 680 690 700 710
>>XP_016876434 (OMIM: 606555) PREDICTED: E3 ubiquitin-pr (710 aa)
initn: 4566 init1: 4566 opt: 4566 Z-score: 3342.6 bits: 628.9 E(85289): 1.9e-179
Smith-Waterman score: 4566; 99.8% identity (100.0% similar) in 661 aa overlap (1-661:1-661)
10 20 30 40 50 60
pF1KSD MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEVAWFAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEVAWFAF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD DPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGIHYWELTVDRYDNHPDPAFGVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGIHYWELTVDRYDNHPDPAFGVAR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD MDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDFNRKNLTF
::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
XP_016 MDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDLNRKNLTF
610 620 630 640 650 660
pF1KSD FYQR
:
XP_016 FINDEQQGPIAFDNVEGLFFPAVSLNRNVQVTLHTGLPVPDFYSSRASIA
670 680 690 700 710
>>XP_016876435 (OMIM: 606555) PREDICTED: E3 ubiquitin-pr (706 aa)
initn: 4527 init1: 3026 opt: 4523 Z-score: 3311.2 bits: 623.1 E(85289): 1.1e-177
Smith-Waterman score: 4523; 99.2% identity (99.4% similar) in 661 aa overlap (1-661:1-657)
10 20 30 40 50 60
pF1KSD MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
XP_016 PLLQSIHQLDFVQVK----VPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
430 440 450 460 470
490 500 510 520 530 540
pF1KSD DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEVAWFAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEVAWFAF
480 490 500 510 520 530
550 560 570 580 590 600
pF1KSD DPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGIHYWELTVDRYDNHPDPAFGVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGIHYWELTVDRYDNHPDPAFGVAR
540 550 560 570 580 590
610 620 630 640 650 660
pF1KSD MDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDFNRKNLTF
::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
XP_016 MDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDLNRKNLTF
600 610 620 630 640 650
pF1KSD FYQR
:
XP_016 FINDEQQGPIAFDNVEGLFFPAVSLNRNVQVTLHTGLPVPDFYSSRASIA
660 670 680 690 700
>>XP_016876436 (OMIM: 606555) PREDICTED: E3 ubiquitin-pr (692 aa)
initn: 4442 init1: 4275 opt: 4275 Z-score: 3130.5 bits: 589.6 E(85289): 1.2e-167
Smith-Waterman score: 4380; 97.0% identity (97.3% similar) in 661 aa overlap (1-661:1-643)
10 20 30 40 50 60
pF1KSD MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEVAWFAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEVAWFAF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD DPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGIHYWELTVDRYDNHPDPAFGVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGIHYWELTVDRYDNHPDPAFGVAR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KSD MDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDFNRKNLTF
:::::::::::::::::. ::::::::::::::::.:::::::
XP_016 MDVMKDVMLGKDDKAWAI------------------TEGGITKGATIGVLLDLNRKNLTF
610 620 630 640
pF1KSD FYQR
:
XP_016 FINDEQQGPIAFDNVEGLFFPAVSLNRNVQVTLHTGLPVPDFYSSRASIA
650 660 670 680 690
>>XP_016876437 (OMIM: 606555) PREDICTED: E3 ubiquitin-pr (688 aa)
initn: 4373 init1: 3026 opt: 4232 Z-score: 3099.2 bits: 583.8 E(85289): 6.9e-166
Smith-Waterman score: 4337; 96.4% identity (96.7% similar) in 661 aa overlap (1-661:1-639)
10 20 30 40 50 60
pF1KSD MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
XP_016 PLLQSIHQLDFVQVK----VPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
430 440 450 460 470
490 500 510 520 530 540
pF1KSD DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEVAWFAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEVAWFAF
480 490 500 510 520 530
550 560 570 580 590 600
pF1KSD DPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGIHYWELTVDRYDNHPDPAFGVAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGIHYWELTVDRYDNHPDPAFGVAR
540 550 560 570 580 590
610 620 630 640 650 660
pF1KSD MDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDFNRKNLTF
:::::::::::::::::. ::::::::::::::::.:::::::
XP_016 MDVMKDVMLGKDDKAWAI------------------TEGGITKGATIGVLLDLNRKNLTF
600 610 620 630
pF1KSD FYQR
:
XP_016 FINDEQQGPIAFDNVEGLFFPAVSLNRNVQVTLHTGLPVPDFYSSRASIA
640 650 660 670 680
>>XP_005267359 (OMIM: 606555) PREDICTED: E3 ubiquitin-pr (714 aa)
initn: 4398 init1: 3691 opt: 3808 Z-score: 2789.8 bits: 526.6 E(85289): 1.2e-148
Smith-Waterman score: 4326; 93.9% identity (94.1% similar) in 683 aa overlap (1-661:1-665)
10 20 30 40 50 60
pF1KSD MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
430 440 450 460 470 480
490 500 510 520 530
pF1KSD DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSE------
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGCNFET
490 500 510 520 530 540
540 550 560 570
pF1KSD ----------------VAWFAFDPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGI
::::::::::::::::::::::::::::::::::::::::::::
XP_005 QSAPYSQLVDIKKLLAVAWFAFDPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGI
550 560 570 580 590 600
580 590 600 610 620 630
pF1KSD HYWELTVDRYDNHPDPAFGVARMDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTE
:::::::::::::::::::::::::::::::::::::::. ::
XP_005 HYWELTVDRYDNHPDPAFGVARMDVMKDVMLGKDDKAWAI------------------TE
610 620 630 640
640 650 660
pF1KSD GGITKGATIGVLLDFNRKNLTFFYQR
::::::::::::::.::::::::
XP_005 GGITKGATIGVLLDLNRKNLTFFINDEQQGPIAFDNVEGLFFPAVSLNRNVQVTLHTGLP
650 660 670 680 690 700
>>NP_443210 (OMIM: 606555) E3 ubiquitin-protein ligase T (550 aa)
initn: 3691 init1: 3691 opt: 3691 Z-score: 2706.1 bits: 510.8 E(85289): 5.5e-144
Smith-Waterman score: 3691; 100.0% identity (100.0% similar) in 534 aa overlap (1-534:1-534)
10 20 30 40 50 60
pF1KSD MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KSD DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEVAWFAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGKALQQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KSD DPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGIHYWELTVDRYDNHPDPAFGVAR
NP_443 YPSERELRGI
550
>>XP_016876433 (OMIM: 606555) PREDICTED: E3 ubiquitin-pr (732 aa)
initn: 4552 init1: 3691 opt: 3692 Z-score: 2705.1 bits: 511.0 E(85289): 6.2e-144
Smith-Waterman score: 4512; 96.6% identity (96.8% similar) in 683 aa overlap (1-661:1-683)
10 20 30 40 50 60
pF1KSD MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
430 440 450 460 470 480
490 500 510 520 530
pF1KSD DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSE------
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGCNFET
490 500 510 520 530 540
540 550 560 570
pF1KSD ----------------VAWFAFDPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGI
::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSAPYSQLVDIKKLLAVAWFAFDPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGI
550 560 570 580 590 600
580 590 600 610 620 630
pF1KSD HYWELTVDRYDNHPDPAFGVARMDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HYWELTVDRYDNHPDPAFGVARMDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTE
610 620 630 640 650 660
640 650 660
pF1KSD GGITKGATIGVLLDFNRKNLTFFYQR
::::::::::::::.::::::::
XP_016 GGITKGATIGVLLDLNRKNLTFFINDEQQGPIAFDNVEGLFFPAVSLNRNVQVTLHTGLP
670 680 690 700 710 720
>>XP_005267358 (OMIM: 606555) PREDICTED: E3 ubiquitin-pr (777 aa)
initn: 4398 init1: 3691 opt: 3691 Z-score: 2704.0 bits: 510.9 E(85289): 7.1e-144
Smith-Waterman score: 4046; 87.8% identity (87.8% similar) in 696 aa overlap (1-611:1-696)
10 20 30 40 50 60
pF1KSD MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
430 440 450 460 470 480
490 500 510 520 530
pF1KSD DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSE------
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEDTDSEE
490 500 510 520 530 540
pF1KSD ------------------------------------------------------------
XP_005 QTLPFPVPSERLPLRRMSPFSSTLNLQPSFPGRSYFDFRSSPHQLSLHSSLQSLNAPGCN
550 560 570 580 590 600
540 550 560 570
pF1KSD -------------------VAWFAFDPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFS
:::::::::::::::::::::::::::::::::::::::::
XP_005 FETQSAPYSQLVDIKKLLAVAWFAFDPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFS
610 620 630 640 650 660
580 590 600 610 620 630
pF1KSD KGIHYWELTVDRYDNHPDPAFGVARMDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTN
::::::::::::::::::::::::::::::::::::
XP_005 KGIHYWELTVDRYDNHPDPAFGVARMDVMKDVMLGKDDKAWAITEGGITKGATIGVLLDL
670 680 690 700 710 720
640 650 660
pF1KSD RTEGGITKGATIGVLLDFNRKNLTFFYQR
XP_005 NRKNLTFFINDEQQGPIAFDNVEGLFFPAVSLNRNVQVTLHTGLPVPDFYSSRASIA
730 740 750 760 770
>>XP_006720081 (OMIM: 606555) PREDICTED: E3 ubiquitin-pr (795 aa)
initn: 4552 init1: 3691 opt: 3691 Z-score: 2703.8 bits: 510.9 E(85289): 7.2e-144
Smith-Waterman score: 4046; 87.8% identity (87.8% similar) in 696 aa overlap (1-611:1-696)
10 20 30 40 50 60
pF1KSD MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KSD DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KSD PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KSD MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KSD CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 CVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KSD MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KSD RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KSD PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELD
430 440 450 460 470 480
490 500 510 520 530
pF1KSD DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSE------
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEDTDSEE
490 500 510 520 530 540
pF1KSD ------------------------------------------------------------
XP_006 QTLPFPVPSERLPLRRMSPFSSTLNLQPSFPGRSYFDFRSSPHQLSLHSSLQSLNAPGCN
550 560 570 580 590 600
540 550 560 570
pF1KSD -------------------VAWFAFDPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFS
:::::::::::::::::::::::::::::::::::::::::
XP_006 FETQSAPYSQLVDIKKLLAVAWFAFDPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFS
610 620 630 640 650 660
580 590 600 610 620 630
pF1KSD KGIHYWELTVDRYDNHPDPAFGVARMDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTN
::::::::::::::::::::::::::::::::::::
XP_006 KGIHYWELTVDRYDNHPDPAFGVARMDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTN
670 680 690 700 710 720
640 650 660
pF1KSD RTEGGITKGATIGVLLDFNRKNLTFFYQR
XP_006 RTEGGITKGATIGVLLDLNRKNLTFFINDEQQGPIAFDNVEGLFFPAVSLNRNVQVTLHT
730 740 750 760 770 780
>--
initn: 340 init1: 340 opt: 340 Z-score: 260.3 bits: 58.8 E(85289): 9.2e-08
Smith-Waterman score: 340; 98.0% identity (100.0% similar) in 50 aa overlap (612-661:697-746)
590 600 610 620 630 640
pF1KSD ELTVDRYDNHPDPAFGVARMDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGI
::::::::::::::::::::::::::::::
XP_006 ELTVDRYDNHPDPAFGVARMDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGI
670 680 690 700 710 720
650 660
pF1KSD TKGATIGVLLDFNRKNLTFFYQR
:::::::::::.::::::::
XP_006 TKGATIGVLLDLNRKNLTFFINDEQQGPIAFDNVEGLFFPAVSLNRNVQVTLHTGLPVPD
730 740 750 760 770 780
664 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 01:06:14 2016 done: Thu Nov 3 01:06:16 2016
Total Scan time: 10.900 Total Display time: 0.150
Function used was FASTA [36.3.4 Apr, 2011]